CaUC09G173900 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGTAAAGATTCCCCCTCATTGCTCTTTTTTATTCATAGTATAGATTTTAGGTTTTCAATTTTACAAATGAATTTTAGTATTAATAATTTTCTACTACACTAAAAATGATAGTTCACTATATCCATTTGTTTACTCCTGTTGTAGCTCTTCCCTCTCTTCCCTCTGGGCACTTGAAAGTTAAAGTTTTGGATGTTTGGTTGCTTTTGCTACTAGTTCCTTACTGTTCAATACGAATAATAAAACTCCATTGATGAGTAGTCATTAAAACAAGAACCCAGCAAGGCATCTTCAAGACAGAAAATTAATTACAATAAGAAAGGACTGTGTATAGTGTGATGATGAAAGGAAAAATGAGAATAGACGTAAAATCCATTTATTTCAGGATCTAGTGATATACTCTGCCTATGGGTTAGGCTTATATATATTTAATTTGACGACACCTATGTTGGATTGATATTTTAGAGCAGGGCCAAAACATTAACATCTTGATTTTACCTTGTCATTTTAATGATATCAAACATCTTTTGGTAAATTTTCTTGTTCCTTCTACTGTTCTAGATTATTAGAAAGATAAATTCAGCTTAGCCTTAGATGCAGATGCATTTAGTGACCCGTTTAAAAAGTAATATAAGCCCTTCTACGTTTTGATAGAAGAAATTCTGTTTACTCCAGGAATTTATTCCCTGTAGGAAATTCTTCCTTTATTTTCTTACTGAAGGATAGTTGGATTAATAGTTACGAGTTTGTATTTTTTGTTACAGTGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTCCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGGTGATTGAATGTTTTGTTCTAAAGTTCCTTCTCCGGCAATAAGATCTTAATGTAATCATTTGGGTTTCATATCTCCGAAATCTTTTTCATCAGGAAAAAAAAAAAAAAAAGGATTTCAGTAGCCATTGATGTTCCGATTCAGCTAGGGTATATTTTAAATGTTTGCAGAAACATGTTGTCTTCTTAGATGATTTCCAGCTAACAGTTTCCTTTAAAGTCATTTTCAACTTTATATGCAAGATCAGAAGGTTGATTATTTCTTTGCCCACATATGTTTCATTGTAGCGTTTAGCTAGATAACTTTGTATGAATTTCAGAAATGGCATGCGTCATGAGCTGCTGTTCGTATAGGAAAATTGCGTCCTCCCCTATGTGCAATACTCTGGCATTTTCAGTCATATGGTTTCTCATAGGTTCGAATATCTATTTAATGGCTTTTTACTTGCACATAATGCAGATCAGGAGATCTATACTAAATGAAGATGAGTATGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACGATGAAGGTCTAGAGGTAACTATAAATAAGTCCTCGAGTTTATTTCGTCTCTAAATTTCCTTGGGATTGAGTTAGATCTATACATCATTTAGTTGATAGTCTGTACAAGAGTAGGATGTAGTGCTGCTATTTTATTTTGTTCAATGGCTTGCTTTTTGTTAGAGCGTGACAAATCCATGTTAGTCAAATAGGAACAAGCATAGTTTAATTAAGTGCCTAACAGCAATAACTATATACAGAATCACAATTGAAAGTGATTTCATGCAGAAAACAAGACAGACGTTGAATGCAAAAATAAGCCAATTGAATTCTGCGATTGATAATGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGATTGAAGCTACCATGTAAATTCAATTTCAACATAATTGAAAAAAAAGGTTTGAAATTTTCACATCTTAGAGACCATATACTCATGTGACACATATGCCACAATTTTTAACTGGAAGCTTTTTGGATTGATCAAGATTAAAATGGATTGTTTTTTGACATTTAAATTAGAATGGTTGGAAATATTTGAATATAAGCACTTTAACATTTTTGGTAATTACTAGTGCATTCAGAAGTTTAAAGCTTGGACTGCATCCATTTTGTGAAGTGTCTCCACGTCCACGAGATCTCAGACGGTTTGCTTTCTTCATTTGCCTGGATAATTGA ATGGGAGATAAATTCAGCTTAGCCTTAGATGCAGATGCATTTAGTGACCCGTTTAAAAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTCCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGATCAGGAGATCTATACTAAATGAAGATGAGTATGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACGATGAAGGTCTAGAGAAAACAAGACAGACGTTGAATGCAAAAATAAGCCAATTGAATTCTGCGATTGATAATGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGATTGAAGCTACCATAAGTTTAAAGCTTGGACTGCATCCATTTTGTGAAGTGTCTCCACGTCCACGAGATCTCAGACGGTTTGCTTTCTTCATTTGCCTGGATAATTGA ATGGGAGATAAATTCAGCTTAGCCTTAGATGCAGATGCATTTAGTGACCCGTTTAAAAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTCCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGATCAGGAGATCTATACTAAATGAAGATGAGTATGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACGATGAAGGTCTAGAGAAAACAAGACAGACGTTGAATGCAAAAATAAGCCAATTGAATTCTGCGATTGATAATGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGATTGAAGCTACCATAAGTTTAAAGCTTGGACTGCATCCATTTTGTGAAGTGTCTCCACGTCCACGAGATCTCAGACGGTTTGCTTTCTTCATTTGCCTGGATAATTGA MGDKFSLALDADAFSDPFKNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATISLKLGLHPFCEVSPRPRDLRRFAFFICLDN Homology
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_038902580.1 (uncharacterized protein LOC120089235 [Benincasa hispida]) HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48 Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_031394845.1 (uncharacterized protein LOC116206185 [Punica granatum] >PKI68992.1 hypothetical protein CRG98_010614 [Punica granatum]) HSP 1 Score: 198.0 bits (502), Expect = 6.0e-47 Identity = 99/122 (81.15%), Postives = 109/122 (89.34%), Query Frame = 0
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_023512433.1 (uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46 Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_022986629.1 (uncharacterized protein LOC111484314 [Cucurbita maxima]) HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46 Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_022948116.1 (uncharacterized protein LOC111451792 [Cucurbita moschata] >KAG6605135.1 hypothetical protein SDJN03_02452, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035131.1 hypothetical protein SDJN02_01926 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 195.7 bits (496), Expect = 3.0e-46 Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A2I0KKF8 (uncharacterized protein LOC116206185 OS=Punica granatum OX=22663 GN=LOC116206185 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 2.9e-47 Identity = 99/122 (81.15%), Postives = 109/122 (89.34%), Query Frame = 0
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A6J1JGK4 (uncharacterized protein LOC111484314 OS=Cucurbita maxima OX=3661 GN=LOC111484314 PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46 Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A5D3CQ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00050 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46 Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 0
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A6J1L384 (uncharacterized protein LOC111499995 OS=Cucurbita maxima OX=3661 GN=LOC111499995 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46 Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A6J1G8D5 (uncharacterized protein LOC111451792 OS=Cucurbita moschata OX=3662 GN=LOC111451792 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46 Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT5G16660.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 150.6 bits (379), Expect = 1.0e-36 Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 0
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT5G16660.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 150.6 bits (379), Expect = 1.0e-36 Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 0
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT3G02900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast hits to 80 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33 Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 0
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT3G02900.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1). ) HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33 Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 0
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast. ) HSP 1 Score: 80.1 bits (196), Expect = 1.7e-15 Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|