CaUC09G173900 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G173900
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionLow-density receptor-like protein
LocationCiama_Chr09: 32628080 .. 32630174 (-)
RNA-Seq ExpressionCaUC09G173900
SyntenyCaUC09G173900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTAAAGATTCCCCCTCATTGCTCTTTTTTATTCATAGTATAGATTTTAGGTTTTCAATTTTACAAATGAATTTTAGTATTAATAATTTTCTACTACACTAAAAATGATAGTTCACTATATCCATTTGTTTACTCCTGTTGTAGCTCTTCCCTCTCTTCCCTCTGGGCACTTGAAAGTTAAAGTTTTGGATGTTTGGTTGCTTTTGCTACTAGTTCCTTACTGTTCAATACGAATAATAAAACTCCATTGATGAGTAGTCATTAAAACAAGAACCCAGCAAGGCATCTTCAAGACAGAAAATTAATTACAATAAGAAAGGACTGTGTATAGTGTGATGATGAAAGGAAAAATGAGAATAGACGTAAAATCCATTTATTTCAGGATCTAGTGATATACTCTGCCTATGGGTTAGGCTTATATATATTTAATTTGACGACACCTATGTTGGATTGATATTTTAGAGCAGGGCCAAAACATTAACATCTTGATTTTACCTTGTCATTTTAATGATATCAAACATCTTTTGGTAAATTTTCTTGTTCCTTCTACTGTTCTAGATTATTAGAAAGATAAATTCAGCTTAGCCTTAGATGCAGATGCATTTAGTGACCCGTTTAAAAAGTAATATAAGCCCTTCTACGTTTTGATAGAAGAAATTCTGTTTACTCCAGGAATTTATTCCCTGTAGGAAATTCTTCCTTTATTTTCTTACTGAAGGATAGTTGGATTAATAGTTACGAGTTTGTATTTTTTGTTACAGTGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTCCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGGTGATTGAATGTTTTGTTCTAAAGTTCCTTCTCCGGCAATAAGATCTTAATGTAATCATTTGGGTTTCATATCTCCGAAATCTTTTTCATCAGGAAAAAAAAAAAAAAAAGGATTTCAGTAGCCATTGATGTTCCGATTCAGCTAGGGTATATTTTAAATGTTTGCAGAAACATGTTGTCTTCTTAGATGATTTCCAGCTAACAGTTTCCTTTAAAGTCATTTTCAACTTTATATGCAAGATCAGAAGGTTGATTATTTCTTTGCCCACATATGTTTCATTGTAGCGTTTAGCTAGATAACTTTGTATGAATTTCAGAAATGGCATGCGTCATGAGCTGCTGTTCGTATAGGAAAATTGCGTCCTCCCCTATGTGCAATACTCTGGCATTTTCAGTCATATGGTTTCTCATAGGTTCGAATATCTATTTAATGGCTTTTTACTTGCACATAATGCAGATCAGGAGATCTATACTAAATGAAGATGAGTATGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACGATGAAGGTCTAGAGGTAACTATAAATAAGTCCTCGAGTTTATTTCGTCTCTAAATTTCCTTGGGATTGAGTTAGATCTATACATCATTTAGTTGATAGTCTGTACAAGAGTAGGATGTAGTGCTGCTATTTTATTTTGTTCAATGGCTTGCTTTTTGTTAGAGCGTGACAAATCCATGTTAGTCAAATAGGAACAAGCATAGTTTAATTAAGTGCCTAACAGCAATAACTATATACAGAATCACAATTGAAAGTGATTTCATGCAGAAAACAAGACAGACGTTGAATGCAAAAATAAGCCAATTGAATTCTGCGATTGATAATGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGATTGAAGCTACCATGTAAATTCAATTTCAACATAATTGAAAAAAAAGGTTTGAAATTTTCACATCTTAGAGACCATATACTCATGTGACACATATGCCACAATTTTTAACTGGAAGCTTTTTGGATTGATCAAGATTAAAATGGATTGTTTTTTGACATTTAAATTAGAATGGTTGGAAATATTTGAATATAAGCACTTTAACATTTTTGGTAATTACTAGTGCATTCAGAAGTTTAAAGCTTGGACTGCATCCATTTTGTGAAGTGTCTCCACGTCCACGAGATCTCAGACGGTTTGCTTTCTTCATTTGCCTGGATAATTGA

mRNA sequence

ATGGGAGATAAATTCAGCTTAGCCTTAGATGCAGATGCATTTAGTGACCCGTTTAAAAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTCCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGATCAGGAGATCTATACTAAATGAAGATGAGTATGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACGATGAAGGTCTAGAGAAAACAAGACAGACGTTGAATGCAAAAATAAGCCAATTGAATTCTGCGATTGATAATGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGATTGAAGCTACCATAAGTTTAAAGCTTGGACTGCATCCATTTTGTGAAGTGTCTCCACGTCCACGAGATCTCAGACGGTTTGCTTTCTTCATTTGCCTGGATAATTGA

Coding sequence (CDS)

ATGGGAGATAAATTCAGCTTAGCCTTAGATGCAGATGCATTTAGTGACCCGTTTAAAAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTCCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGATCAGGAGATCTATACTAAATGAAGATGAGTATGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACGATGAAGGTCTAGAGAAAACAAGACAGACGTTGAATGCAAAAATAAGCCAATTGAATTCTGCGATTGATAATGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGATTGAAGCTACCATAAGTTTAAAGCTTGGACTGCATCCATTTTGTGAAGTGTCTCCACGTCCACGAGATCTCAGACGGTTTGCTTTCTTCATTTGCCTGGATAATTGA

Protein sequence

MGDKFSLALDADAFSDPFKNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATISLKLGLHPFCEVSPRPRDLRRFAFFICLDN
Homology
[Close]
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_038902580.1 (uncharacterized protein LOC120089235 [Benincasa hispida])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDG RSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRAKRPIYYDEGLEK
Sbjct: 54  NDGDRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK 113

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATI 124
           TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT+
Sbjct: 114 TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM 157

[Close]
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_031394845.1 (uncharacterized protein LOC116206185 [Punica granatum] >PKI68992.1 hypothetical protein CRG98_010614 [Punica granatum])

HSP 1 Score: 198.0 bits (502), Expect = 6.0e-47
Identity = 99/122 (81.15%), Postives = 109/122 (89.34%), Query Frame = 0 

Query: 2   GDKFSLALDADAFSDPFKNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDE 61
           GDK  L++ AD++      DGGR GG DF+AGFLLGGAVFGTLAY+FAPQIRRS+LNEDE
Sbjct: 42  GDKNRLSVRADSY-----RDGGRGGGSDFLAGFLLGGAVFGTLAYVFAPQIRRSLLNEDE 101

Query: 62  YGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEA 121
           YGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNN+P VPVE DPE+EA
Sbjct: 102 YGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNSPTVPVETDPEVEA 158

Query: 122 TI 124
           T+
Sbjct: 162 TM 158

[Close]
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_023512433.1 (uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRA+RPIYYD+GLEK
Sbjct: 54  NDGGRSGGGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEK 113

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATI 124
           TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEAT+
Sbjct: 114 TRQTLNEKIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEATM 157

[Close]
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_022986629.1 (uncharacterized protein LOC111484314 [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRA+RPIYYD+GLEK
Sbjct: 54  NDGGRSGGGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEK 113

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATI 124
           TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEAT+
Sbjct: 114 TRQTLNEKIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEATM 157

[Close]
BLAST of CaUC09G173900 vs. NCBI nr
Match: XP_022948116.1 (uncharacterized protein LOC111451792 [Cucurbita moschata] >KAG6605135.1 hypothetical protein SDJN03_02452, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035131.1 hypothetical protein SDJN02_01926 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 3.0e-46
Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNE+EYGF+RAKRPIYYDEGLEK
Sbjct: 53  NDGGRSGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEK 112

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT 123
           TR+TLNAKI QLNSAIDNVSSRLRGG NTPAVPVEADPE+EAT
Sbjct: 113 TRETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 155

[Close]
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A2I0KKF8 (uncharacterized protein LOC116206185 OS=Punica granatum OX=22663 GN=LOC116206185 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.9e-47
Identity = 99/122 (81.15%), Postives = 109/122 (89.34%), Query Frame = 0 

Query: 2   GDKFSLALDADAFSDPFKNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDE 61
           GDK  L++ AD++      DGGR GG DF+AGFLLGGAVFGTLAY+FAPQIRRS+LNEDE
Sbjct: 42  GDKNRLSVRADSY-----RDGGRGGGSDFLAGFLLGGAVFGTLAYVFAPQIRRSLLNEDE 101

Query: 62  YGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEA 121
           YGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNN+P VPVE DPE+EA
Sbjct: 102 YGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNSPTVPVETDPEVEA 158

Query: 122 TI 124
           T+
Sbjct: 162 TM 158

[Close]
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A6J1JGK4 (uncharacterized protein LOC111484314 OS=Cucurbita maxima OX=3661 GN=LOC111484314 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRA+RPIYYD+GLEK
Sbjct: 54  NDGGRSGGGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEK 113

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATI 124
           TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEAT+
Sbjct: 114 TRQTLNEKIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEATM 157

[Close]
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A5D3CQ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00050 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQIRRSILNEDE+GFRRAKRP+YYDEGLEK
Sbjct: 54  NDGGRSGGGDFVAGFLLGGAVFGTLAYLFAPQIRRSILNEDEHGFRRAKRPMYYDEGLEK 113

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATI 124
           TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV EA+PEIEAT+
Sbjct: 114 TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEEAEPEIEATM 158

[Close]
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A6J1L384 (uncharacterized protein LOC111499995 OS=Cucurbita maxima OX=3661 GN=LOC111499995 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNE+EYGF+RAKRPIYYDEGLEK
Sbjct: 53  NDGGRSGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEK 112

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT 123
           TR+TLNAKI QLNSAIDNVSSRLRGG NTPAVPVEADPE+EAT
Sbjct: 113 TRETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 155

[Close]
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match: A0A6J1G8D5 (uncharacterized protein LOC111451792 OS=Cucurbita moschata OX=3662 GN=LOC111451792 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 20  NDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 79
           NDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNE+EYGF+RAKRPIYYDEGLEK
Sbjct: 53  NDGGRSGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEK 112

Query: 80  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT 123
           TR+TLNAKI QLNSAIDNVSSRLRGG NTPAVPVEADPE+EAT
Sbjct: 113 TRETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 155

[Close]
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT5G16660.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 150.6 bits (379), Expect = 1.0e-36
Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 0 

Query: 21  DGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQIRRSILN-EDEYGFRRAKRPIYYDEGLE 80
           DG RSG  GDF+AGFLLGGAVFG +AYIFAPQIRRS+LN EDEYGF + K+P YYDEGLE
Sbjct: 61  DGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLE 120

Query: 81  KTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT 123
           KTR+TLN KI QLNSAIDNVSSRLRG   NT +  VPVE DPE+EAT
Sbjct: 121 KTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEAT 167

[Close]
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT5G16660.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 150.6 bits (379), Expect = 1.0e-36
Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 0 

Query: 21  DGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQIRRSILN-EDEYGFRRAKRPIYYDEGLE 80
           DG RSG  GDF+AGFLLGGAVFG +AYIFAPQIRRS+LN EDEYGF + K+P YYDEGLE
Sbjct: 59  DGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLE 118

Query: 81  KTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT 123
           KTR+TLN KI QLNSAIDNVSSRLRG   NT +  VPVE DPE+EAT
Sbjct: 119 KTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEAT 165

[Close]
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT3G02900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast hits to 80 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 0 

Query: 22  GGRSGGG--DFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 81
           GG  GGG  DFV GFLLG AVFGTLAYIFAPQIRRS+L+E+EYGF++ ++P+YYDEGLE+
Sbjct: 52  GGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEE 111

Query: 82  TRQTLNAKISQLNSAIDNVSSRLRGG-------NNTPAVPVEADPEIEAT 123
            R+ LN KI QLNSAID VSSRL+GG        ++P+VPVE D E EAT
Sbjct: 112 RREILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSVPVETDAEAEAT 161

[Close]
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT3G02900.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1). )

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 0 

Query: 22  GGRSGGG--DFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDEGLEK 81
           GG  GGG  DFV GFLLG AVFGTLAYIFAPQIRRS+L+E+EYGF++ ++P+YYDEGLE+
Sbjct: 51  GGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEE 110

Query: 82  TRQTLNAKISQLNSAIDNVSSRLRGG-------NNTPAVPVEADPEIEAT 123
            R+ LN KI QLNSAID VSSRL+GG        ++P+VPVE D E EAT
Sbjct: 111 RREILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSVPVETDAEAEAT 160

[Close]
BLAST of CaUC09G173900 vs. TAIR 10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast. )

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-15
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 18  FKNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRAKRPIYYDE-- 77
           +++D G    G FV GF+LGG + G L  ++APQI ++I   D     R      YDE  
Sbjct: 62  YRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGADRKDLMRKLPKFIYDEEK 121

Query: 78  GLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT 123
            LEKTR+ L  KI+QLNSAID+VSS+L+   +TP     +  EIEAT
Sbjct: 122 ALEKTRKVLAEKIAQLNSAIDDVSSQLK-SEDTPNGAALSTDEIEAT 167

The following BLAST results are available for this feature:
BLAST of CaUC09G173900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902580.13.2e-4897.12uncharacterized protein LOC120089235 [Benincasa hispida][more]
XP_031394845.16.0e-4781.15uncharacterized protein LOC116206185 [Punica granatum] >PKI68992.1 hypothetical ... [more]
XP_023512433.12.3e-4693.27uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo][more]
XP_022986629.12.3e-4693.27uncharacterized protein LOC111484314 [Cucurbita maxima][more]
XP_022948116.13.0e-4692.23uncharacterized protein LOC111451792 [Cucurbita moschata] >KAG6605135.1 hypothet... [more]
BLAST of CaUC09G173900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G173900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2I0KKF82.9e-4781.15uncharacterized protein LOC116206185 OS=Punica granatum OX=22663 GN=LOC116206185... [more]
A0A6J1JGK41.1e-4693.27uncharacterized protein LOC111484314 OS=Cucurbita maxima OX=3661 GN=LOC111484314... [more]
A0A5D3CQ661.4e-4694.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1L3841.4e-4692.23uncharacterized protein LOC111499995 OS=Cucurbita maxima OX=3661 GN=LOC111499995... [more]
A0A6J1G8D51.4e-4692.23uncharacterized protein LOC111451792 OS=Cucurbita moschata OX=3662 GN=LOC1114517... [more]
BLAST of CaUC09G173900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G16660.11.0e-3676.64unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G16660.21.0e-3676.64unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G02900.11.1e-3366.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G02900.21.1e-3366.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G42960.11.7e-1544.86expressed protein localized to the inner membrane of the chloroplast. [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 81..101
NoneNo IPR availablePANTHERPTHR34048:SF3LOW-DENSITY RECEPTOR-LIKE PROTEINcoord: 20..122
NoneNo IPR availablePANTHERPTHR34048LOW-DENSITY RECEPTOR-LIKE PROTEINcoord: 20..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G173900.1CaUC09G173900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane