CaUC09G173050 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G173050
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Gag-Pol polyprotein
Location	Ciama_Chr09: 29718698 .. 29722500 (+)
RNA-Seq Expression	CaUC09G173050
Synteny	CaUC09G173050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGATCTTGAGAAAAGCAAATCCACCACCAGATGTGTTCACTCTTGCTAGCAGAGCTGTAAGCTGGGTTTGCAAACTGCAGTCAGTTGTGGCAATGTCAACAACAGAAGTAGAATATGTTGCAGCTACACAAGCTAGTAAAGAAGCGGTATGGTTAAAATTGTCATTGAAAGAGCTCGGGCATGAACATAAGAAAATTTCTCTGTTTTGTGACAGTCAGAGCGCCTTGTACCTTGTAAGCAATCCAGCTTTCCATGCCAAGTCCAAACATAGTCGAGTGCAGTACCATTTTGTTCGTGAGAAAGTGGAGGAAGGAATAGTGGATATGCATAAAATTCATACAAAAGAAAACCTAGCAGATTACTTAAGAAAGGCAGTCAATGCTGACAAGTTCAATTGGTGTCGGTCCTCGAATGGCCTAGCAGAAACATAAGCAACATGAAGATGGCAAGGTAGAAAAAATGGTGCGTTGATATGATTGACTATCAATCAAATCTCCAAGTGGGAGAATGTTGGATAATTATCAAGAAATATCCTTATTATTTCAAGAATTTTCTTGGAAACAAATTTTGGGCCATTGGATCTTACACTTTGTCCAAGATCAATTTATGGCCATTAGATCTTTCACACTGATCAAGAACAATTGGAGCCATTGGATCCTTCACATCTATCAAGGATAAATTGGAGCCATTGGATTTGCTTGATGACCAAGTCTTTTTGGGCTATAAATAGGCGAGAACCCATGGTTTCCATATCATCCTAAAATCTACAAGTGAGCAAGAGTGAGAGAAAGAGTAGAGAGAGTTTCTTCTTATAAGAGAGTTTTGTATCCTTCTATAAGAAAGAAAGTTTGTATCTCCTATTTTCTATAGTGAAATTCTTCTATCCTTGCCCGTGGTTTTTACCCTAATTTGTTTAGGGGTTTTCCACGTAAAACCACGGTGTGTTATTCTCTTCCTTCTTCTTCATTATTATTTGGTTCTTTTAAATTTCTATTTGAATTAAATTGAATTTCTTAGCTTGTTGCACAAAAATAGATGTATCATTTCCGTACAAGGATGCGTTGAGAATTACAATAGATGTGATCATGACTAAGCAAGTTTTCCTATAAAGACCCAAGTATAAGCATTTATAGGTTTCCTGGTGAGTCCAGGGTCGAACGCAGGGATTTGTAATAACTAGGCGTTGAGAATAAATGCATGACTATGCGGTGACTGTACATGTAAATATGTGCGTTTGTTGATTATATGTATAAAACTATACATAAAGAATGAAAAGAATTCCCTACTACTAATAATGAAGTGGACGCGGCGTTGGGTAGTCATATGTAATTTAGCGTCAGATAGCATACGTTGAGAATGAATGGAACCATGCGATAGAAGTAGAGTTGAACGCAAGAGCTAGTTGTTACCTAAACTTTCTAAGTACAATTACATACTTACAAACTGCGTTTGTGAATCCATCTCTCGATGTTTCGACGCCACATTAATCTTATCTCTAAGACGCATGGTAAGTTTGCGTTGGCAAAAGATAAACTACATCTCTGTACTCATCTAGTCTTAATTAATGCTAAAGATTAATGATGTGGTACTTTTGTGTGTTAACCGCAAGTGTACGGGTCAAGTTATAATATAAAACGGTTAAGTCCGAGTATCGTTTCCACTAGAGATCCAATTGGGAAGGTTTAAGTTATTTAGTTATTCTAGAATTGAATCAATCTTATTTGAGGATTGGAATTCAACTTTTGTTTTTGGGAAAAAGAAAAATCAAGCAAGAAAATATCAAAGGGAGAATTGCAAGAGTTCAAAGAGAGTTCTAGGGTTTCAAATCCTTGTTTGTTTCATCGTGCAAAATTATAGATTTCATGGATTTAATTCTTATGCCTAAGTCTAGAAACTTTATTCCAAGTTATCTTCTCTCAAAGACAACTCTTTCTCATGCAACTTGATTGATAGTTAATCTTTTAAAACCAATACAAAATTACATGGCATTAAAACTAGTCTTTAGCAACTTTCATTGTAAACCTAACTACTCTCGTGATAGATTAACAACGATTCATTGTTATAGATCAAATTAAATATATAATCTCTCGATCATACATCTAACCTAACATGTGAAGGTGGCCAATCTTCAAGAATTAAACACAATAACAATGAAAAGCATATTTATTTGAACAAAACCATGAGTCTACAAAATTATCATGAGTTCACAAACAATTCATCAAAAACCCTAAAACTAAAGAGTTTAGCCACTCATAGCGTAAAGCAACATATTGATAAAAAAGAATCAAAGAAAGAGTGTAAAGAATAAGGAAACTCTACTGAAAAGAGGTTCTTGATTGAGGCAGCACCGTCACGAACTCCTTGGCTCTCGCGTCGGACTTCGAAGGGCACCAAAACTATCTCGAACTCTTTTCCTCTTCCTTGCGGCTAACTCACTCTTGGAACTCTAGCTTAATTCTCACCTTTTCGGATCGTTCTCTTGTTCTGCAACTTTCTTGATCTTCTTGATATTTTTCTTCCCCTTTTGGCTGCTGAAAACCCCTCATTTTATAGAGTTTGGCCGCCCAAAATTTGACCTAAAATACAAAACTTGCGTTTAAATTAACGCTGGCGCCGCGGCGCTAGGGTTGCGACCAAAAATAAGTTGCTCTCGGGTTTTAGCGCCGCAGCAGCGCCGTCCCAGCGCCGTGACGTTGTCTTGCGTCCATGCTGATGCGTTTCTGCTTCAGCGCCGCGGCGCATCATGCGTTTCACTCAAGGATGCGTTTTTCAGCACTTTTTCGCCATATTCTTGCTCGGTTTTGATCTTTCAGTCGTTTCTTCTAATTTTCCTCGTTTTTAACCTGAAAATCACTAGCAAACAAGTGAAATCTAATATAAAACTCCCTTAATTTGAGAGAATAATAAGCACTTTTCAAGTGCTTATCAATTAACTATCCATTCTCTCAAGCTCGACAGTCATGCTTACTACATTTGTTTGTCAGACAAAGTTATGCAAGCTAAAAATATGCATTAATCAAGATGTAACATACTCAGAATTGCTCAAGAAAAACTAACTTTTAACATTTAACTGATTTAGCATTTAGACAACATGGTGTAAAGTATTTAATACGAAAATAGATGGAAGATGATAGTCAATCAAACTCATATTAAGACAATAAATCATTCTCTCGAATGTCATTAATAAAATATAAGCAAGAAGAAGAGAAATGGAAATAAAATAGAGATGAAGGGCGTCAAGCCGCCACTGGCAACGTCTTGCTTCATGGAGGCTTGAGATGGTTGCTATCTGATACATAGATTCCATAAGGTGAAGATTCTCACTCACTGGGAGACGACTCTGAAGGTGCTCAGAATCCTTCTCTCAAAAGAGCTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCACCTTTTGAACTGGTCTCTCTTCCTCCTCTTCTTGGAGAAGCTTGTGGACTATTTATAGGCGTCAAAAAGTTGATATTATGATGACCTGACACCTTTGCATTAAATTTCAGCCACGCTGCATAGACTTTTCAGATTGTCAGCCTATTTGTTCTGTCATGATCTGATTGGGTGTTGTCCTTTTTCATAATGACATGACAGCTGTTTGAGCATGCGTCTGTTTCTACTTTTCAGATTGTCAACGCATAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAGCAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTCTTAACCCTGCGTTAGAAACATAA

mRNA sequence

ATGCAGGTGATCTTGAGAAAAGCAAATCCACCACCAGATGTGTTCACTCTTGCTAGCAGAGCTGTAAGCTGGGTTTGCAAACTGCAGTCAGTTGTGGCAATGTCAACAACAGAAGTAGAATATGTTGCAGCTACACAAGCTAGTAAAGAAGCGGTATGGTTAAAATTGTCATTGAAAGAGCTCGGGCATGAACATAAGAAAATTTCTCTGTTTTGTGACAGTCAGAGCGCCTTGTACCTTGTAAGCAATCCAGCTTTCCATGCCAAGTCCAAACATAGTCGAGTGCAGTACCATTTTGTTCGTGAGAAAGTGGAGGAAGGAATAGTGGATATGCATAAAATTCATACAAAAGAAAACCTAGCAGATTACTTAAGAAAGGCAGTCAATGCTGACAAGTTCAATTGGTGTCGATTCCATAAGGTGAAGATTCTCACTCACTGGGAGACGACTCTGAAGGTGCTCAGAATCCTTCTCTCAAAAGAGCTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCACCTTTTGAACTGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAGCAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTCTTAACCCTGCGTTAGAAACATAA

Coding sequence (CDS)

ATGCAGGTGATCTTGAGAAAAGCAAATCCACCACCAGATGTGTTCACTCTTGCTAGCAGAGCTGTAAGCTGGGTTTGCAAACTGCAGTCAGTTGTGGCAATGTCAACAACAGAAGTAGAATATGTTGCAGCTACACAAGCTAGTAAAGAAGCGGTATGGTTAAAATTGTCATTGAAAGAGCTCGGGCATGAACATAAGAAAATTTCTCTGTTTTGTGACAGTCAGAGCGCCTTGTACCTTGTAAGCAATCCAGCTTTCCATGCCAAGTCCAAACATAGTCGAGTGCAGTACCATTTTGTTCGTGAGAAAGTGGAGGAAGGAATAGTGGATATGCATAAAATTCATACAAAAGAAAACCTAGCAGATTACTTAAGAAAGGCAGTCAATGCTGACAAGTTCAATTGGTGTCGATTCCATAAGGTGAAGATTCTCACTCACTGGGAGACGACTCTGAAGGTGCTCAGAATCCTTCTCTCAAAAGAGCTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCACCTTTTGAACTGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAGCAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTCTTAACCCTGCGTTAGAAACATAA

Protein sequence

MQVILRKANPPPDVFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCDSQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKFNWCRFHKVKILTHWETTLKVLRILLSKELEMEAGYGEGEIVQSFHLLNWLDAWSQRIGSTHGFPLVLAAASSLRTSIVCASFLLNPALET

Homology

[Close]

BLAST of CaUC09G173050 vs. NCBI nr
Match: TYK21896.1 (Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-51
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 14  VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
           VFTLAS AVSWV KLQ VVAMST EVEY+AATQASKEA+WLK+ L+ELGHEHKKISLFCD
Sbjct: 76  VFTLASGAVSWVSKLQLVVAMSTIEVEYIAATQASKEAIWLKMLLEELGHEHKKISLFCD 135

Query: 74  SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
           +Q+ALYL  NPAFHAK+KH RVQYHF+REKVEEGI+DMHKIHTKENLADYL KAVN DKF
Sbjct: 136 NQNALYLARNPAFHAKTKHIRVQYHFIREKVEEGIIDMHKIHTKENLADYLTKAVNTDKF 195

Query: 134 NWCR 138
            WC+
Sbjct: 196 IWCQ 199

[Close]

BLAST of CaUC09G173050 vs. NCBI nr
Match: TYK06685.1 (Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 3.8e-50
Identity = 105/124 (84.68%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 14  VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
           VFTLAS AVSWV KLQS+VAMSTTEVEYVAATQ SKE VWLK+ L+EL HEHKKISLFCD
Sbjct: 812 VFTLAS-AVSWVSKLQSIVAMSTTEVEYVAATQTSKEVVWLKMLLEELRHEHKKISLFCD 871

Query: 74  SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
           +QSALYL  NPAFHAK+KH RVQYHFVREKVEEGI+DMHKIHTKENLADYL K VN DKF
Sbjct: 872 NQSALYLARNPAFHAKTKHIRVQYHFVREKVEEGIIDMHKIHTKENLADYLTKVVNTDKF 931

Query: 134 NWCR 138
            WCR
Sbjct: 932 IWCR 934

[Close]

BLAST of CaUC09G173050 vs. NCBI nr
Match: KAA0060043.1 (Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-48
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 21  AVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCDSQSALYL 80
           AVSWV KLQSVVAMST EVEY+AATQASKEA+WLK+ L+ELGHEHKKISLFCD+Q+ALYL
Sbjct: 46  AVSWVSKLQSVVAMSTIEVEYIAATQASKEAIWLKMLLEELGHEHKKISLFCDNQNALYL 105

Query: 81  VSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKFNWCR 138
             NPAFHAK+KH RVQYHF+ EKVEEGI+DMHKIHTKENLADYL KAVN DKF WC+
Sbjct: 106 ARNPAFHAKTKHIRVQYHFIHEKVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCQ 162

[Close]

BLAST of CaUC09G173050 vs. NCBI nr
Match: KAA0067221.1 (Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 8.8e-47
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 14  VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
           VFTLA+  V+WV KLQSVVAMS T+ EYVAATQASKE  WLK+ L++L HEHKKISLFC 
Sbjct: 251 VFTLANGVVNWVSKLQSVVAMSPTKAEYVAATQASKEVAWLKMILEKLEHEHKKISLFCV 310

Query: 74  SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
           +QSALYL  NPAFHAK+KH RVQYHFV EKVEEGI+DMHK+HTKENL DYL KAVNADKF
Sbjct: 311 NQSALYLARNPAFHAKTKHIRVQYHFVHEKVEEGIIDMHKMHTKENLVDYLTKAVNADKF 370

Query: 134 NWCR 138
            WCR
Sbjct: 371 IWCR 374

[Close]

BLAST of CaUC09G173050 vs. NCBI nr
Match: KAE8730652.1 (putative galacturonosyltransferase 6 [Hibiscus syriacus])

HSP 1 Score: 192.6 bits (488), Expect = 3.7e-45
Identity = 91/124 (73.39%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 14   VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
            VF +A  AVSWV KLQSVVA STTE EYVAATQASKEA+WLK+ L+ELGH  + +SLFCD
Sbjct: 1101 VFKVAGGAVSWVSKLQSVVATSTTEAEYVAATQASKEAIWLKMLLEELGHNQEYVSLFCD 1160

Query: 74   SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
            SQSAL+L  NPAFH+++KH RVQYHF+REKVEEG VDM KIHTK+N+AD++ KA+NADKF
Sbjct: 1161 SQSALHLARNPAFHSRTKHIRVQYHFIREKVEEGTVDMQKIHTKDNIADFMTKAINADKF 1220

Query: 134  NWCR 138
             WCR
Sbjct: 1221 TWCR 1224

[Close]

BLAST of CaUC09G173050 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-26
Identity = 60/124 (48.39%), Postives = 84/124 (67.74%), Query Frame = 0


Query: 14   VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
            +FT +  A+SW  KLQ  VA+STTE EY+AAT+  KE +WLK  L+ELG   K+  ++CD
Sbjct: 1197 LFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCD 1256

Query: 74   SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
            SQSA+ L  N  +HA++KH  V+YH++RE V++  + + KI T EN AD L K V  +KF
Sbjct: 1257 SQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1316

Query: 134  NWCR 138
              C+
Sbjct: 1317 ELCK 1320

[Close]

BLAST of CaUC09G173050 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 4.6e-14
Identity = 40/113 (35.40%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 22   VSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHE-HKKISLFCDSQSALYL 81
            + W  K Q+ VA S+TE EY+A  +A +EA+WLK  L  +  +    I ++ D+Q  + +
Sbjct: 1279 ICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISI 1338

Query: 82   VSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 134
             +NP+ H ++KH  ++YHF RE+V+  ++ +  I T+  LAD   K + A +F
Sbjct: 1339 ANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391

[Close]

BLAST of CaUC09G173050 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.8e-14
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 17   LASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELG-HEHKKISLFCDSQ 76
            L    +SW  K Q  V  S+TE EY +    S E  W+   L ELG    +   ++CD+ 
Sbjct: 1334 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNV 1393

Query: 77   SALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 134
             A YL +NP FH++ KH  + YHF+R +V+ G + +  + T + LAD L K ++   F
Sbjct: 1394 GATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAF 1451

[Close]

BLAST of CaUC09G173050 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.8e-14
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 17   LASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHE--HKKISLFCDS 76
            L    +SW  K Q  V  S+TE EY +    S E  W+   L ELG +  H  + ++CD+
Sbjct: 1317 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPV-IYCDN 1376

Query: 77   QSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 134
              A YL +NP FH++ KH  + YHF+R +V+ G + +  + T + LAD L K ++   F
Sbjct: 1377 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAF 1434

[Close]

BLAST of CaUC09G173050 vs. ExPASy Swiss-Prot
Match: P0C2J7 (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-05
Identity = 32/101 (31.68%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 34   MSTTEVEYVAATQASKEAVWLKLSLKELGH-EHKKISLFCDSQSALYLVSNPAFHAKSKH 93
            +S+TE E  A  +   ++  LK++LKELG  ++  I +  DS+ A+  ++      K K 
Sbjct: 1680 VSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKF 1739

Query: 94   SRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 134
            + ++   ++EK++E  + + KI  K N+AD L K V+A  F
Sbjct: 1740 TWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDF 1780

[Close]

BLAST of CaUC09G173050 vs. ExPASy TrEMBL
Match: A0A5D3DE76 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00320 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 14  VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
           VFTLAS AVSWV KLQ VVAMST EVEY+AATQASKEA+WLK+ L+ELGHEHKKISLFCD
Sbjct: 76  VFTLASGAVSWVSKLQLVVAMSTIEVEYIAATQASKEAIWLKMLLEELGHEHKKISLFCD 135

Query: 74  SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
           +Q+ALYL  NPAFHAK+KH RVQYHF+REKVEEGI+DMHKIHTKENLADYL KAVN DKF
Sbjct: 136 NQNALYLARNPAFHAKTKHIRVQYHFIREKVEEGIIDMHKIHTKENLADYLTKAVNTDKF 195

Query: 134 NWCR 138
            WC+
Sbjct: 196 IWCQ 199

[Close]

BLAST of CaUC09G173050 vs. ExPASy TrEMBL
Match: A0A5D3C5M6 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001790 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 105/124 (84.68%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 14  VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
           VFTLAS AVSWV KLQS+VAMSTTEVEYVAATQ SKE VWLK+ L+EL HEHKKISLFCD
Sbjct: 812 VFTLAS-AVSWVSKLQSIVAMSTTEVEYVAATQTSKEVVWLKMLLEELRHEHKKISLFCD 871

Query: 74  SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
           +QSALYL  NPAFHAK+KH RVQYHFVREKVEEGI+DMHKIHTKENLADYL K VN DKF
Sbjct: 872 NQSALYLARNPAFHAKTKHIRVQYHFVREKVEEGIIDMHKIHTKENLADYLTKVVNTDKF 931

Query: 134 NWCR 138
            WCR
Sbjct: 932 IWCR 934

[Close]

BLAST of CaUC09G173050 vs. ExPASy TrEMBL
Match: A0A5A7UVP5 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00030 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 7.7e-49
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 21  AVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCDSQSALYL 80
           AVSWV KLQSVVAMST EVEY+AATQASKEA+WLK+ L+ELGHEHKKISLFCD+Q+ALYL
Sbjct: 46  AVSWVSKLQSVVAMSTIEVEYIAATQASKEAIWLKMLLEELGHEHKKISLFCDNQNALYL 105

Query: 81  VSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKFNWCR 138
             NPAFHAK+KH RVQYHF+ EKVEEGI+DMHKIHTKENLADYL KAVN DKF WC+
Sbjct: 106 ARNPAFHAKTKHIRVQYHFIHEKVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCQ 162

[Close]

BLAST of CaUC09G173050 vs. ExPASy TrEMBL
Match: A0A5A7VNN0 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00270 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 14  VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
           VFTLA+  V+WV KLQSVVAMS T+ EYVAATQASKE  WLK+ L++L HEHKKISLFC 
Sbjct: 251 VFTLANGVVNWVSKLQSVVAMSPTKAEYVAATQASKEVAWLKMILEKLEHEHKKISLFCV 310

Query: 74  SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
           +QSALYL  NPAFHAK+KH RVQYHFV EKVEEGI+DMHK+HTKENL DYL KAVNADKF
Sbjct: 311 NQSALYLARNPAFHAKTKHIRVQYHFVHEKVEEGIIDMHKMHTKENLVDYLTKAVNADKF 370

Query: 134 NWCR 138
            WCR
Sbjct: 371 IWCR 374

[Close]

BLAST of CaUC09G173050 vs. ExPASy TrEMBL
Match: A0A6A3CT26 (Putative galacturonosyltransferase 6 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002919pilonHSYRG00317 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 91/124 (73.39%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 14   VFTLASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHEHKKISLFCD 73
            VF +A  AVSWV KLQSVVA STTE EYVAATQASKEA+WLK+ L+ELGH  + +SLFCD
Sbjct: 1101 VFKVAGGAVSWVSKLQSVVATSTTEAEYVAATQASKEAIWLKMLLEELGHNQEYVSLFCD 1160

Query: 74   SQSALYLVSNPAFHAKSKHSRVQYHFVREKVEEGIVDMHKIHTKENLADYLRKAVNADKF 133
            SQSAL+L  NPAFH+++KH RVQYHF+REKVEEG VDM KIHTK+N+AD++ KA+NADKF
Sbjct: 1161 SQSALHLARNPAFHSRTKHIRVQYHFIREKVEEGTVDMQKIHTKDNIADFMTKAINADKF 1220

Query: 134  NWCR 138
             WCR
Sbjct: 1221 TWCR 1224

[Close]

BLAST of CaUC09G173050 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-09
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 17  LASRAVSWVCKLQSVVAMSTTEVEYVAATQASKEAVWLKLSLKELGHE-HKKISLFCDSQ 76
           L +  +SW  K Q VV+ S+ E EY A + A+ E +WL    +EL     K   LFCD+ 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 77  SALYLVSNPAFHAKSKHSRVQYHFVREK 104
           +A+++ +N  FH ++KH     H VRE+
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRER 554

The following BLAST results are available for this feature:

BLAST of CaUC09G173050 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21896.1	2.6e-51	83.06	Gag-Pol [Cucumis melo var. makuwa]	[more]
TYK06685.1	3.8e-50	84.68	Gag-Pol [Cucumis melo var. makuwa]	[more]
KAA0060043.1	1.6e-48	82.91	Gag-Pol [Cucumis melo var. makuwa]	[more]
KAA0067221.1	8.8e-47	78.23	Gag-Pol [Cucumis melo var. makuwa]	[more]
KAE8730652.1	3.7e-45	73.39	putative galacturonosyltransferase 6 [Hibiscus syriacus]	[more]

BLAST of CaUC09G173050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-26	48.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.6e-14	35.40	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	7.8e-14	35.59	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.8e-14	36.13	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0C2J7	3.0e-05	31.68	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CaUC09G173050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DE76	1.3e-51	83.06	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00320 PE=4 S...	[more]
A0A5D3C5M6	1.8e-50	84.68	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001790 PE=4 ...	[more]
A0A5A7UVP5	7.7e-49	82.91	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00030 PE=4 S...	[more]
A0A5A7VNN0	4.2e-47	78.23	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00270 PE=4 S...	[more]
A0A6A3CT26	1.8e-45	73.39	Putative galacturonosyltransferase 6 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig...	[more]

BLAST of CaUC09G173050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.5e-09	37.50	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 13..139
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 13..139
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 14..131 e-value: 3.27251E-51 score: 160.712

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G173050.1	CaUC09G173050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0007018	microtubule-based movement
biological_process	GO:0045489	pectin biosynthetic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding