CaUC09G163880 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G163880
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	nuclear transcription factor Y subunit B-1
Location	Ciama_Chr09: 5538504 .. 5538980 (-)
RNA-Seq Expression	CaUC09G163880
Synteny	CaUC09G163880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGCTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA

mRNA sequence

ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGCTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGCTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA

Protein sequence

MDENTGMSERLVEFKYDFSGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA

Homology

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BLAST of CaUC09G163880 vs. NCBI nr
Match: XP_008451614.1 (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 7.5e-77
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFSGGG--GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGM ER VEFKYDF+GGG  GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHD 158
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN NNNN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 159

[Close]

BLAST of CaUC09G163880 vs. NCBI nr
Match: XP_011659350.1 (nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 9.8e-77
Identity = 150/159 (94.34%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFSGGG--GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGM ER +EFKYDF+GGG  GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHD 158
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+ NNNN+D
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNND 159

[Close]

BLAST of CaUC09G163880 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFSGGG--GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGM ERLVEFKYDF+GGG  GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHD 158
           DDYAEPLRRYLVRYR+MEGERAQQNKGCC    NNNNHD
Sbjct: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCC----NNNNHD 155

[Close]

BLAST of CaUC09G163880 vs. NCBI nr
Match: KAA0068030.1 (nuclear transcription factor Y subunit B-1 [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 7   MSERLVEFKYDFSGGG--GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 66
           M ER VEFKYDF+GGG  GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP
Sbjct: 1   MPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 60

Query: 67  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 126
           PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
Sbjct: 61  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 120

Query: 127 LRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHD 158
           LRRYLVRYRDMEGERAQQNKGCCNNN NNNN++
Sbjct: 121 LRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 153

[Close]

BLAST of CaUC09G163880 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 6.6e-73
Identity = 144/160 (90.00%), Postives = 151/160 (94.38%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFS--GGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MD+NT M ERLVEFKYDF+  GGGGVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 159
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNNNT    HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT----HDA 156

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BLAST of CaUC09G163880 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.0e-41
Identity = 86/113 (76.11%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 42  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 101
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 102 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQN-KGCCNNNTNN 154
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   ++ +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of CaUC09G163880 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-37
Identity = 81/122 (66.39%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 19  SGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQ 78
           +GGGG G S G      G G     KEQDR LPIANV RIMK+ LP NAKISKE+KET+Q
Sbjct: 32  AGGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQ 91

Query: 79  ECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 138
           ECVSEFISFVTGEASDKC +EKRKT+NGDD+  A+ TLGF+ Y  PL+ YL RYR+ EGE
Sbjct: 92  ECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGE 151

Query: 139 RA 141
           +A
Sbjct: 152 KA 153

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BLAST of CaUC09G163880 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-37
Identity = 78/122 (63.93%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 20  GGGG---VGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKET 79
           GGGG    G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET
Sbjct: 10  GGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKET 69

Query: 80  MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDME 139
           +QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+ME
Sbjct: 70  VQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 129

[Close]

BLAST of CaUC09G163880 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.6e-37
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 19  SGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQ 78
           S GGG G    GS    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+Q
Sbjct: 7   SPGGGGGSHESGSPR--GGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQ 66

Query: 79  ECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 138
           ECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG+
Sbjct: 67  ECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]

BLAST of CaUC09G163880 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-36
Identity = 80/125 (64.00%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 20  GGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 79
           G  GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 80  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 139
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 140 AQQNK 145
               K
Sbjct: 131 VNSPK 135

[Close]

BLAST of CaUC09G163880 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFSGGG--GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGM ER VEFKYDF+GGG  GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHD 158
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN NNNN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 159

[Close]

BLAST of CaUC09G163880 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.8e-77
Identity = 150/159 (94.34%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFSGGG--GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGM ER +EFKYDF+GGG  GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHD 158
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+ NNNN+D
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNND 159

[Close]

BLAST of CaUC09G163880 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 7   MSERLVEFKYDFSGGG--GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 66
           M ER VEFKYDF+GGG  GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP
Sbjct: 1   MPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 60

Query: 67  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 126
           PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
Sbjct: 61  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 120

Query: 127 LRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHD 158
           LRRYLVRYRDMEGERAQQNKGCCNNN NNNN++
Sbjct: 121 LRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 153

[Close]

BLAST of CaUC09G163880 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.2e-72
Identity = 143/160 (89.38%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFS--GGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MD+NT M ERLVEFKYDF+  GGGGVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 159
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNNN     HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNA----HDA 156

[Close]

BLAST of CaUC09G163880 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 143/161 (88.82%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 1   MDENTGMSERLVEFKYDFS---GGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGR 60
           MD+NT M ERLVEFKYDF+   G GGVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 159
           FDDYAEPLRRYL+RYR++EGERAQQNKGCCNNNT    HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT----HDA 157

[Close]

BLAST of CaUC09G163880 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-42
Identity = 86/113 (76.11%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 42  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 101
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 102 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQN-KGCCNNNTNN 154
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   ++ +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of CaUC09G163880 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 154.5 bits (389), Expect = 7.3e-38
Identity = 80/125 (64.00%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 20  GGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 79
           G  GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 80  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 139
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 140 AQQNK 145
               K
Sbjct: 131 VNSPK 135

[Close]

BLAST of CaUC09G163880 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 32  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 91
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 92  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 151
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++EG+    NKG    
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKG-SGK 125

Query: 152 NTNNNNHDA 159
           + + +N DA
Sbjct: 126 SGDGSNRDA 129

[Close]

BLAST of CaUC09G163880 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 32  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 91
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 92  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 151
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++EG+    NKG    
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKG-SGK 125

Query: 152 NTNNNNHDA 159
           + + +N DA
Sbjct: 126 SGDGSNRDA 129

[Close]

BLAST of CaUC09G163880 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 32  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 91
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 92  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 151
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++EG+    NKG    
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKG-SGK 125

Query: 152 NTNNNNHDA 159
           + + +N DA
Sbjct: 126 SGDGSNRDA 129

The following BLAST results are available for this feature:

BLAST of CaUC09G163880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451614.1	7.5e-77	94.97	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
XP_011659350.1	9.8e-77	94.34	nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
XP_038876756.1	3.2e-75	94.34	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]
KAA0068030.1	3.9e-73	94.77	nuclear transcription factor Y subunit B-1 [Cucumis melo var. makuwa]	[more]
XP_023549145.1	6.6e-73	90.00	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC09G163880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	4.0e-41	76.11	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q0J7P4	2.1e-37	66.39	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q60EQ4	2.7e-37	63.93	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
P25209	4.6e-37	65.00	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]
Q9SIT9	1.0e-36	64.00	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of CaUC09G163880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BT19	3.6e-77	94.97	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A0A0K954	4.8e-77	94.34	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A5A7VLD2	1.9e-73	94.77	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1JM11	1.2e-72	89.38	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GM85	2.1e-72	88.82	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CaUC09G163880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	2.9e-42	76.11	nuclear factor Y, subunit B5	[more]
AT2G13570.1	7.3e-38	64.00	nuclear factor Y, subunit B7	[more]
AT2G38880.2	1.3e-37	63.57	nuclear factor Y, subunit B1	[more]
AT2G38880.3	1.3e-37	63.57	nuclear factor Y, subunit B1	[more]
AT2G38880.1	1.3e-37	63.57	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 77..95 score: 51.32 coord: 115..133 score: 34.09 coord: 96..114 score: 34.21
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 32..155
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 49..113 e-value: 6.6E-27 score: 93.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 41..158 e-value: 2.7E-43 score: 149.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 46..155
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 32..155
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 80..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G163880.1	CaUC09G163880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding