CaUC07G140370 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC07G140370
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionAconitate hydratase
LocationCiama_Chr07: 31278395 .. 31280677 (-)
RNA-Seq ExpressionCaUC07G140370
SyntenyCaUC07G140370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTGATCTGAGTGAATGGGTTTGAAGAGAGAGTCCATCTTTTTAAGCCTTATGCTTCTTCTCCTTTTCCATATGGCAACAGGGAGACTCATCCAAAACACTTCACCTTATGCAGATTGTAAGTCCTATTTCTCTTTTTCTTTTTTTCTTTGGACAGATATGAAACATAATTTTACCCTAATAATAATAATCACTCAGTTTTAAAAATAAATAATTCCAGGATATGTATGCAGCTTTCGAATTATGATCAATTATCACGGTGCATTGCCTGCTTAGCCTTTCTGTTCATGTTAAAGTTTTGAAAAAAAAAAAAAAAAAAAAATTTCTATATTTAAAAGATGAGAAGTACGAATATCAGTGATATTATTTGTGAAACTCGCAGAGTATCTATCAACAATGACGACAAACTTGGAGTTAAATTAAATTCATACTGATATTTTTTCAAAAAGAAAAATTCAAAGAATAAAATTCCTTGCTCTCTTCAACAGTTGAAATTGGTTTGAATATTTACTAAATCGACCATAATTTATTTAGTAGTGGTTTTAGTAAAAAAAAAAAAAAAAAAAAAAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAACAACAACTCCAACGAACCACTGCACACTACACTAACTCTAATTTTACCAAAGTTCATCCAACAAAAAGTAGAAACTGAGTCAAATGATTGATCTTAAAATTGAATAGGAGACCAATCAAGACATAGTAATTGGGTGAAAAATGTCTACAAGATATTTCTACAATATTTGTATAACATTGTCAATTTTAGATGACATAAGATCTTTAAGACTTTTATCTTTTTGAACTACCCAAGAAGTCTCATGTCAATATGGTAGAAAATTTATATCAAAAATCTCGAAATTTTGTTACAGAGAAATGGCGTTTTTCCTCGTTTCGATAAAATTTCAAAATTTTAAAAAAAATTATTTAAAAAATAGAAATTAAAAATAAAATCATTATCAAAACAAGGCTTAAACTTTGAATCCTGTGTCAAGTAGATCACTAGATTTTAAAATATTGAAATAGGTCAAAGACATAATTAGAACATAAATAAAATTTCGACAAACTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATATCTCAAATTTGGCTTGCTTTTAGAAAAAATAATAATAATAATTATTATTATTATTATTATCAAACAAATCTATTTATTAAAAATGTAAGTAAAAACAAAAACTTTATGAAAAGGTCCTTTATTTTCTCGACATTTGGATCAGCCCAGGGCATGGTCATATCCCACAGAGTCAATCATGGCTGCAGACAAATTTTGGCATTGTTAATGCCGGTGGGTTTGGTGTAGAATTGATGTCCACCTCAGTGGTTGACTCCCAAGTCTATTCTGCTGATTTATAATTTATTAAATGCACCAAAAGATAAAATTCCACTGTTCTTAATTTTTGTTAAGCATCTCAACTTTTTTATATTCGTGTAAAGATATTAACATTTTTAAGAGAAATAAACATGTTAGTTTTAATTTATTCTTACATTCTTTAAAGAATAACATAAATGGCAACAGGGAGACTCATCCATACTCATACTACTTTGCTTCAACCAAATTGTAATCCCTATATCCCTTCTATCTTCTAATTTCTTTATTTTAATTCTCTCTTTTTCAATCCCAAAATTTTATTGCATGTTTTACCGGTTGATTTAGAGAATGATTTCCATTTTCAATATCACTTTCAAAAACTTGTTTCTTTCTTAGTAATCTAAAATGAATGATATGAATATTATGTTTAGATGCAGCTTAGGCTACATTTAACCATTGCGAGCTTTATTCCATTCTAACATGAGTTACATTTTATACGTATAATATTTTTCATTCTAAATATTGAAACGATCAAACTAGACCTTAAATTTAGTTGTTGATGAGTTATGTTTTATGGTAACAGTTGAGACGATGAATATAGATGGGAAGAATAGGGTAGAGAGTCAGCTTCTGAGTTCAGCTCTGCCTAGAGGTGGTAACTATATTGACAACCCGCAGGCGGCAAAGAAGGTCGCGGTCCGTCGCTCCGGCTACCGGCCATGA

mRNA sequence

TGTTTGATCTGAGTGAATGGGTTTGAAGAGAGAGTCCATCTTTTTAAGCCTTATGCTTCTTCTCCTTTTCCATATGGCAACAGGGAGACTCATCCAAAACACTTCACCTTATGCAGATTGGCATGGTCATATCCCACAGAGTCAATCATGGCTGCAGACAAATTTTGGCATTGTTAATGCCGGTGGGTTTGGTGTAGAATTGATGTCCACCTCAGTGGTTGACTCCCAAACCTTAAATTTAGTTGTTGATGAGTTATGTTTTATGGTAACAGTTGAGACGATGAATATAGATGGGAAGAATAGGGTAGAGAGTCAGCTTCTGAGTTCAGCTCTGCCTAGAGGTGGTAACTATATTGACAACCCGCAGGCGGCAAAGAAGGTCGCGGTCCGTCGCTCCGGCTACCGGCCATGA

Coding sequence (CDS)

ATGGGTTTGAAGAGAGAGTCCATCTTTTTAAGCCTTATGCTTCTTCTCCTTTTCCATATGGCAACAGGGAGACTCATCCAAAACACTTCACCTTATGCAGATTGGCATGGTCATATCCCACAGAGTCAATCATGGCTGCAGACAAATTTTGGCATTGTTAATGCCGGTGGGTTTGGTGTAGAATTGATGTCCACCTCAGTGGTTGACTCCCAAACCTTAAATTTAGTTGTTGATGAGTTATGTTTTATGGTAACAGTTGAGACGATGAATATAGATGGGAAGAATAGGGTAGAGAGTCAGCTTCTGAGTTCAGCTCTGCCTAGAGGTGGTAACTATATTGACAACCCGCAGGCGGCAAAGAAGGTCGCGGTCCGTCGCTCCGGCTACCGGCCATGA

Protein sequence

MGLKRESIFLSLMLLLLFHMATGRLIQNTSPYADWHGHIPQSQSWLQTNFGIVNAGGFGVELMSTSVVDSQTLNLVVDELCFMVTVETMNIDGKNRVESQLLSSALPRGGNYIDNPQAAKKVAVRRSGYRP
Homology
[Close]
BLAST of CaUC07G140370 vs. NCBI nr
Match: KGN53132.1 (hypothetical protein Csa_014795 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 57/133 (42.86%), Postives = 68/133 (51.13%), Query Frame = 0 

Query: 1   MGLKRESIFLSLMLLLLF-HMATGR-LIQNTSPYADWHGHIPQSQSWLQTNFGIVNAGGF 60
           MGLKRESIF S+MLLLL  +MATGR L  +TS +AD+                       
Sbjct: 1   MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADF----------------------- 60

Query: 61  GVELMSTSVVDSQTLNLVVDELCFMVTVETMNIDGKNRVESQLLSSALPRGGNYIDNPQA 120
                                       ETMN+DGKNR  S+ LSSALPRGGNYI+ P A
Sbjct: 61  ----------------------------ETMNMDGKNRDGSRFLSSALPRGGNYINKPHA 82

Query: 121 AKKVAVRRSGYRP 132
           A+K AV R+GY+P
Sbjct: 121 AEKAAVGRAGYQP 82

[Close]
BLAST of CaUC07G140370 vs. NCBI nr
Match: KAG6600180.1 (hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 51/132 (38.64%), Postives = 63/132 (47.73%), Query Frame = 0 

Query: 1   MGLKRESIFLSLMLLLLFHMATGRLIQNTS-PYADWHGHIPQSQSWLQTNFGIVNAGGFG 60
           MGLKR  I LS+M+L+L HMATGR ++ T+ P AD+                        
Sbjct: 1   MGLKRAPILLSVMVLVLVHMATGRPVRTTTLPIADF------------------------ 60

Query: 61  VELMSTSVVDSQTLNLVVDELCFMVTVETMNIDGKNRVESQLLSSALPRGGNYIDNPQAA 120
                                      ETMN+ G+    +QLLSSA PRGGNYIDNPQAA
Sbjct: 61  ---------------------------ETMNMSGETAFGTQLLSSARPRGGNYIDNPQAA 81

Query: 121 KKVAVRRSGYRP 132
            K A++ SGY P
Sbjct: 121 NKAAIQTSGYHP 81

[Close]
BLAST of CaUC07G140370 vs. NCBI nr
Match: KAA0044639.1 (Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-10
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 87  ETMNIDGKNRVESQLLSSALPRGGNYIDNPQAAKKVAVRRSGYRP 132
           ETMN+DGKNR  S+LLS+ALPRGGNYI+NP AA+K AVRRSGY+P
Sbjct: 17  ETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQP 61

[Close]
BLAST of CaUC07G140370 vs. ExPASy TrEMBL
Match: A0A0A0KXI8 (Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 57/133 (42.86%), Postives = 68/133 (51.13%), Query Frame = 0 

Query: 1   MGLKRESIFLSLMLLLLF-HMATGR-LIQNTSPYADWHGHIPQSQSWLQTNFGIVNAGGF 60
           MGLKRESIF S+MLLLL  +MATGR L  +TS +AD+                       
Sbjct: 1   MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADF----------------------- 60

Query: 61  GVELMSTSVVDSQTLNLVVDELCFMVTVETMNIDGKNRVESQLLSSALPRGGNYIDNPQA 120
                                       ETMN+DGKNR  S+ LSSALPRGGNYI+ P A
Sbjct: 61  ----------------------------ETMNMDGKNRDGSRFLSSALPRGGNYINKPHA 82

Query: 121 AKKVAVRRSGYRP 132
           A+K AV R+GY+P
Sbjct: 121 AEKAAVGRAGYQP 82

[Close]
BLAST of CaUC07G140370 vs. ExPASy TrEMBL
Match: A0A5A7TTS9 (Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00860 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 87  ETMNIDGKNRVESQLLSSALPRGGNYIDNPQAAKKVAVRRSGYRP 132
           ETMN+DGKNR  S+LLS+ALPRGGNYI+NP AA+K AVRRSGY+P
Sbjct: 17  ETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQP 61

The following BLAST results are available for this feature:
BLAST of CaUC07G140370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53132.11.2e-1142.86hypothetical protein Csa_014795 [Cucumis sativus][more]
KAG6600180.11.3e-1038.64hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044639.15.0e-1077.78Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [... [more]
BLAST of CaUC07G140370 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC07G140370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXI85.8e-1242.86Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1[more]
A0A5A7TTS92.4e-1077.78Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G... [more]
BLAST of CaUC07G140370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC07G140370.1CaUC07G140370.1mRNA