CaUC07G138490 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G138490
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	arabinogalactan peptide 22-like
Location	Ciama_Chr07: 29195434 .. 29196240 (-)
RNA-Seq Expression	CaUC07G138490
Synteny	CaUC07G138490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCGAGGGCCTCTTTTGGATTTTTGGCTGCCACCGCTCTCCTCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCATTCCTTGGCTCCGGCACCCGCTCCCACCAGCGATGGTTAGTTCCCCTCCTAATTTCTCTTTCTTTAACTTCTGTTTGCATTTCTGTTCCAGATCTGTGTGGAATGTGGATCTCTGGCTTCAGATGATTTCTGTTTCTTTACGCTTCCTTTCCTGATTCTTTTTTTCGATTTACGTTTCTAAATTGAATTTAGCTCAAATCTTAATTTAGTTCATTCCCACCCCCCAGTTTTGAGTATTCGTTCAGGCTTTTCGTGGATCTATTTTCCAATATGCATTCTCAATCTTACGACAGGTCATTTACATCGATTTGTGGACCAATGGTTAGAAATGTCAAATATATAGACGCTATTTTCTTCTTCTCATAACAACAGCATAAAGTTATTTCATAGTTTCAATAACTATTAAATGTCCCATTTGTGAGTGTAATCAAACCAATTGTCATTGTTATGCAAGTAATTATATTTGCTATTTGTGTTTCATCATGAAGTCCTATTCTCAAAAGCCCATTTTAAACTTAATTTAAATAGTTGTTATTTGAAATGCAAAATCCTAAGGAGAATTAGGGATGGAATTCTTAGATTTCTCAATGAAACTTAATTGGTATCTTTAAAATGGAATTTGACAGGGACATCCATAGACCAAGGGATAGCGTATGTGTTAATGATGGTGGCATTGGCACTCACATATCTCATCCACAATGCTGACTTATCCAACAGCTTCTAA

mRNA sequence

ATGGCGGTTTCGAGGGCCTCTTTTGGATTTTTGGCTGCCACCGCTCTCCTCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCATTCCTTGGCTCCGGCACCCGCTCCCACCAGCGATGGGACATCCATAGACCAAGGGATAGCGTATGTGTTAATGATGGTGGCATTGGCACTCACATATCTCATCCACAATGCTGACTTATCCAACAGCTTCTAA

Coding sequence (CDS)

ATGGCGGTTTCGAGGGCCTCTTTTGGATTTTTGGCTGCCACCGCTCTCCTCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCATTCCTTGGCTCCGGCACCCGCTCCCACCAGCGATGGGACATCCATAGACCAAGGGATAGCGTATGTGTTAATGATGGTGGCATTGGCACTCACATATCTCATCCACAATGCTGACTTATCCAACAGCTTCTAA

Protein sequence

MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTYLIHNADLSNSF

Homology

[Close]

BLAST of CaUC07G138490 vs. NCBI nr
Match: XP_038882280.1 (arabinogalactan protein 22-like [Benincasa hispida])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVS ASFGFLAA AL+FAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY
Sbjct: 1  MAVSTASFGFLAAAALIFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLSN+F
Sbjct: 61 LIHNADLSNTF 71

[Close]

BLAST of CaUC07G138490 vs. NCBI nr
Match: XP_022931316.1 (arabinogalactan peptide 22-like [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSR SFGF+AA AL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of CaUC07G138490 vs. NCBI nr
Match: KAG6577157.1 (Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015155.1 Arabinogalactan peptide 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSR SFGF+AA AL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of CaUC07G138490 vs. NCBI nr
Match: XP_022136454.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSRASFGF+AA AL+FAIFLPVA PHSL PAPAP+SDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of CaUC07G138490 vs. NCBI nr
Match: XP_022985432.1 (arabinogalactan peptide 20 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSR SFGF+AA AL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLS+SF
Sbjct: 61 LIHNADLSSSF 71

[Close]

BLAST of CaUC07G138490 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-14
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 4  SRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTYLIH 63
          SR S   +A  A +FA+  P A   SLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]

BLAST of CaUC07G138490 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-14
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          M+ SR  FG     +++FAI LP+A   S APAPAPTSDGT+IDQGIAYVLM+VAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]

BLAST of CaUC07G138490 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-14
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 4  SRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTYLIH 63
          SR S    A  + +FA+ L +A   SLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]

BLAST of CaUC07G138490 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-14
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MA  +     LA   ++  I LP+AQ HS +PAPAPTSDGTSIDQGIAYVLMMVALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

[Close]

BLAST of CaUC07G138490 vs. ExPASy TrEMBL
Match: A0A6J1ETC6 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSR SFGF+AA AL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of CaUC07G138490 vs. ExPASy TrEMBL
Match: A0A6J1C4C2 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSRASFGF+AA AL+FAIFLPVA PHSL PAPAP+SDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of CaUC07G138490 vs. ExPASy TrEMBL
Match: A0A6J1J4V7 (arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSR SFGF+AA AL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 72
          LIHNADLS+SF
Sbjct: 61 LIHNADLSSSF 71

[Close]

BLAST of CaUC07G138490 vs. ExPASy TrEMBL
Match: A0A0A0KZS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSR+SFG LAATAL+FAIFLPVA PHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADL 68
          LIHNADL
Sbjct: 61 LIHNADL 67

[Close]

BLAST of CaUC07G138490 vs. ExPASy TrEMBL
Match: A0A5D3CYF3 (Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004150 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MAVSR+SF  LAATAL+FAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLMMVALALTY
Sbjct: 1  MAVSRSSFELLAATALIFAIFLPVAHPLSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNS 71
          LIHNADLSN+
Sbjct: 61 LIHNADLSNN 70

[Close]

BLAST of CaUC07G138490 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-16
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 4  SRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTYLIH 63
          SR S   +A  A +FA+  P A   SLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]

BLAST of CaUC07G138490 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-16
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          M+ SR  FG     +++FAI LP+A   S APAPAPTSDGT+IDQGIAYVLM+VAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]

BLAST of CaUC07G138490 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-15
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 4  SRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTYLIH 63
          SR S    A  + +FA+ L +A   SLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]

BLAST of CaUC07G138490 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-15
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1  MAVSRASFGFLAATALLFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60
          MA  +     LA   ++  I LP+AQ HS +PAPAPTSDGTSIDQGIAYVLMMVALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

The following BLAST results are available for this feature:

BLAST of CaUC07G138490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882280.1	2.1e-26	94.37	arabinogalactan protein 22-like [Benincasa hispida]	[more]
XP_022931316.1	2.3e-25	91.55	arabinogalactan peptide 22-like [Cucurbita moschata]	[more]
KAG6577157.1	3.0e-25	91.55	Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022136454.1	3.9e-25	90.14	arabinogalactan peptide 22-like [Momordica charantia]	[more]
XP_022985432.1	8.7e-25	90.14	arabinogalactan peptide 20 [Cucurbita maxima]	[more]

BLAST of CaUC07G138490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M373	1.1e-14	64.18	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
Q8L9T8	1.1e-14	66.67	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
O82337	3.2e-14	63.24	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9FK16	4.2e-14	66.67	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of CaUC07G138490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETC6	1.1e-25	91.55	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE...	[more]
A0A6J1C4C2	1.9e-25	90.14	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 P...	[more]
A0A6J1J4V7	4.2e-25	90.14	arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1	[more]
A0A0A0KZS8	2.7e-24	94.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1	[more]
A0A5D3CYF3	1.8e-23	90.00	Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of CaUC07G138490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61640.1	7.9e-16	64.18	arabinogalactan protein 20	[more]
AT5G24105.1	7.9e-16	66.67	arabinogalactan protein 41	[more]
AT2G46330.1	2.3e-15	63.24	arabinogalactan protein 16	[more]
AT5G53250.1	3.0e-15	66.67	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 31..63 e-value: 3.4E-18 score: 65.2
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..70
None	No IPR available	PANTHER	PTHR33374:SF34	ARABINOGALACTAN PROTEIN 22	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G138490.1	CaUC07G138490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane