CaUC06G123060 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G123060
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionF-box protein
LocationCiama_Chr06: 28125143 .. 28126387 (-)
RNA-Seq ExpressionCaUC06G123060
SyntenyCaUC06G123060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGATTTTGTGATTTTCATCCAAAATCACAAAATTTTCGAAATATACCATCCGTAGAAACGGGAGGCGAGGCGTGAGAGGAGGGGGCATAAAAGGGAGGTGAGAATTTTTGAAAGAAAAGAGAAAAACCATTTTTTGTTCTGTTCTGAATCGTGGCGGCCTGTTTCAATTCCTTTGGTTTTAAGCTTCATCCATTATCTCTATCCAACCCCTGGTTGTCTCTTTGTTGATTAGATATGGTTTTGTTCAGTGGGATGCAGAAGCTGGAAATAAGAGGGACTATGGACTGGGGAACTGGGCTTCCACCGCCTTATTGGTAAAGCAATCTTCTCTAAACTTGTAATCTCCAATTTCCCTGTTTGCAGGCTTGTTTCTAAACTTTGGAATCAAATTGTTTTGAATCGCACTTCCTCTTCTACATTACAATTCCTTACTAATGATTTCCTTCTATGCACCTCTGATCGTGTCCCCAATTGCCAATTTACTGGTTTACGCAATCCCAACATGCATTGTATCAATCTTGAGACTACCAAACATTTGGATGTTGCCTTTGATTTGGAATTGGTCCCTTATCTCAATCAACAATCAAAGTAATGGTTTGTTGTTTATTACCAAATGTGCTTTTTACCTATTCAATCCCATGACTAATGAGTTCTTTCACGTTTCTAGACATGATCTAGATGATGATATTCACGTTTTTGGATTTGGCTTTAACCCTACCTCCAAACAATACAAATATCTAGAACTATTGTCCCTAAACACAATTGAAGAACTTAGTATCATAATGGATGTTATGACGTTTGGTGGGTGTGGAACCGAACTTAACCAAAACGAATGGATGCATCTCCACTTTCTCCCTTTTGACATCATTCTTCATGGTGATTACTTCAATGGAGTCATCTATTGGTTGGGAAAAGAAAAGGATAAAGAAAATGAGTATATCATATATGCTCTTGGAAGCTCGCCCTTGCTCAAGAGTGGGGACCTTGTATCAATTTAATGGACCATTTATGCAACTTTTTTATTTGACTTGCCAACAAAGACTATTCAAGTGAATAGTGTGGAGGATGTTCGACATAGATTCATGGACAAGGGAATTTGTTATTAATGACATCCCAAATGATTGGAGCTCTCTCAAGCTCGTCAGAGCCTTTGAAGATGGGGAGATATTGTGTATGATCAATATGGACTTTTTTTGTTTCTACAATCTTCACTGGGAGGAAGAAGATCATACAGAATAA

mRNA sequence

ATGGAGAGATTTTGTGATTTTCATCCAAAATCACAAAATTTTCGAAATATACCATCCGTAGAAACGGGAGGCGAGGCATATGGTTTTGTTCAGTGGGATGCAGAAGCTGGAAATAAGAGGGACTATGGACTGGGGAACTGGGCTTCCACCGCCTTATTGGTAAAGCAATCTTCTCTAAACTTACATGATCTAGATGATGATATTCACGTTTTTGGATTTGGCTTTAACCCTACCTCCAAACAATACAAATATCTAGAACTATTGTCCCTAAACACAATTGAAGAACTTAGTATCATAATGGATGTTATGACGTTTGGTGGGTGTGGAACCGAACTTAACCAAAACGAATGGATGCATCTCCACTTTCTCCCTTTTGACATCATTCTTCATGGTGATTACTTCAATGGAGTCATCTATTGGTTGGGAAAAGAAAAGGATAAAGAAAATGAGTATATCATATATGCTCTTGGAAGCTCGCCCTTGCTCAAGATGTGGAGGATGTTCGACATAGATTCATGGACAAGGGAATTTGTTATTAATGACATCCCAAATGATTGGAGCTCTCTCAAGCTCGTCAGAGCCTTTGAAGATGGGGAGATATTGTGTATGATCAATATGGACTTTTTTTGTTTCTACAATCTTCACTGGGAGGAAGAAGATCATACAGAATAA

Coding sequence (CDS)

ATGGAGAGATTTTGTGATTTTCATCCAAAATCACAAAATTTTCGAAATATACCATCCGTAGAAACGGGAGGCGAGGCATATGGTTTTGTTCAGTGGGATGCAGAAGCTGGAAATAAGAGGGACTATGGACTGGGGAACTGGGCTTCCACCGCCTTATTGGTAAAGCAATCTTCTCTAAACTTACATGATCTAGATGATGATATTCACGTTTTTGGATTTGGCTTTAACCCTACCTCCAAACAATACAAATATCTAGAACTATTGTCCCTAAACACAATTGAAGAACTTAGTATCATAATGGATGTTATGACGTTTGGTGGGTGTGGAACCGAACTTAACCAAAACGAATGGATGCATCTCCACTTTCTCCCTTTTGACATCATTCTTCATGGTGATTACTTCAATGGAGTCATCTATTGGTTGGGAAAAGAAAAGGATAAAGAAAATGAGTATATCATATATGCTCTTGGAAGCTCGCCCTTGCTCAAGATGTGGAGGATGTTCGACATAGATTCATGGACAAGGGAATTTGTTATTAATGACATCCCAAATGATTGGAGCTCTCTCAAGCTCGTCAGAGCCTTTGAAGATGGGGAGATATTGTGTATGATCAATATGGACTTTTTTTGTTTCTACAATCTTCACTGGGAGGAAGAAGATCATACAGAATAA

Protein sequence

MERFCDFHPKSQNFRNIPSVETGGEAYGFVQWDAEAGNKRDYGLGNWASTALLVKQSSLNLHDLDDDIHVFGFGFNPTSKQYKYLELLSLNTIEELSIIMDVMTFGGCGTELNQNEWMHLHFLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALGSSPLLKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAFEDGEILCMINMDFFCFYNLHWEEEDHTE
Homology
[Close]
BLAST of CaUC06G123060 vs. NCBI nr
Match: XP_038890298.1 (F-box protein At3g07870-like [Benincasa hispida])

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-40
Identity = 88/195 (45.13%), Postives = 111/195 (56.92%), Query Frame = 0 

Query: 64  LDDDIHVFGFGFNPTSKQYKYLEL---LSLNTIEELSIIMDVMTFGGCGTELNQNEWMHL 123
           LD+DI+ FGFGF  T+KQYK   +    S N   E   IMDV+TF   GT  N N+W +L
Sbjct: 149 LDNDIYYFGFGFTTTTKQYKLFRVCDSFSRNCEFESGSIMDVLTFSRSGTNANHNQWRYL 208

Query: 124 HFLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALG--------------SSPL----- 183
           H+LP DI  +G Y NG IYW+GKE++KENEY IY L                 PL     
Sbjct: 209 HYLPLDIHSNGAYLNGFIYWIGKEEEKENEYAIYVLDVETEKIELSIVLEICPPLCTSKV 268

Query: 184 -----------------------LKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAFEDG 214
                                  +++WRM + D W REFV++DIPNDW+ L L++AFEDG
Sbjct: 269 GGMQQFNDSVYAIFLINQPTGNSIQVWRMQEKDLWIREFVVDDIPNDWNVLTLIKAFEDG 328

[Close]
BLAST of CaUC06G123060 vs. NCBI nr
Match: TYK24751.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 8.5e-34
Identity = 78/196 (39.80%), Postives = 105/196 (53.57%), Query Frame = 0 

Query: 62  HDLDDDIHVFGFGFNPTSKQYKYLELLSLNTIEELSIIMDVMTFGGCGTELNQNEWMHLH 121
           H+LD D + +G GF+PT+KQYK   +   N     S IM ++TF    T    N+W  LH
Sbjct: 162 HELDGDNYFYGLGFSPTTKQYKMFRVNPNNN----SSIMYILTFRRSETNYKYNQWRQLH 221

Query: 122 FLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALG------------------------ 181
            LP  I   G Y NG IYW+G+++ KENEY IYAL                         
Sbjct: 222 SLPILICCDGVYLNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPG 281

Query: 182 --------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAFED 214
                                + ++++WRM + D W +EFVI+DIPN+W SL L++AFED
Sbjct: 282 VSLKQFNGSVYATFYIDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPNNWCSLTLIKAFED 341

[Close]
BLAST of CaUC06G123060 vs. NCBI nr
Match: KAA0039746.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 8.5e-34
Identity = 78/196 (39.80%), Postives = 105/196 (53.57%), Query Frame = 0 

Query: 62  HDLDDDIHVFGFGFNPTSKQYKYLELLSLNTIEELSIIMDVMTFGGCGTELNQNEWMHLH 121
           H+LD D + +G GF+PT+KQYK   +   N     S IM ++TF    T    N+W  LH
Sbjct: 157 HELDGDNYFYGLGFSPTTKQYKMFRVNPNNN----SSIMYILTFRRSETNYKYNQWRQLH 216

Query: 122 FLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALG------------------------ 181
            LP  I   G Y NG IYW+G+++ KENEY IYAL                         
Sbjct: 217 SLPILICCDGVYLNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPG 276

Query: 182 --------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAFED 214
                                + ++++WRM + D W +EFVI+DIPN+W SL L++AFED
Sbjct: 277 VSLKQFNGSVYATFYIDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPNNWCSLTLIKAFED 336

[Close]
BLAST of CaUC06G123060 vs. NCBI nr
Match: KAA0039747.1 (F-box protein [Cucumis melo var. makuwa] >TYK24750.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-31
Identity = 82/198 (41.41%), Postives = 107/198 (54.04%), Query Frame = 0 

Query: 63  DLDDDIHVFGFGFNPTSKQYKYLELLSL----NTIEELSIIMDVMTF-GGCGTELNQNEW 122
           +LD DI+ +  GF+PT+KQYK   +          +  S IMDV+TF     T  N ++W
Sbjct: 149 ELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNSSIMDVLTFTRRSETNHNHSQW 208

Query: 123 MHLHFLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALG-------------------- 182
             LH LP   I +G Y NGVIYW+G ++DKENEYIIYA+                     
Sbjct: 209 RRLHSLPLR-IHNGAYLNGVIYWIGTKEDKENEYIIYAVNVETELIELSFILDLGPCSTS 268

Query: 183 ----------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAF 214
                                  +  +++WRM + D W REFVI DIP +WSSL L++AF
Sbjct: 269 SHASLKQFNSSVYATFFINPKTYNSSIQVWRMQEKDLWIREFVIVDIPINWSSLTLIKAF 328

[Close]
BLAST of CaUC06G123060 vs. NCBI nr
Match: XP_038875053.1 (F-box protein At3g07870-like [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 7.0e-28
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 0 

Query: 66  DDIHVFGFGFNPTSKQYKYLELL-------SLNTI----EELSIIMDVMTFGGCGTELNQ 125
           DDI+ FGFGF+PT+KQYK   +        S  TI    +E   IMDV+TFG  GT  N 
Sbjct: 143 DDIYDFGFGFSPTTKQYKLFRVADSIAYSESSRTIVPNTQESKSIMDVLTFGRSGTNPNP 202

Query: 126 NEWMHLHFLPFDI--ILHGDYFNGVIYWLGKEKDKENE--YIIYALG------------- 185
            +W HLH L F+   + +G Y NGVIYWL +EK K+N+  Y+IYAL              
Sbjct: 203 YQWRHLHTLSFETEKVCNGAYLNGVIYWLVREKGKDNKLMYVIYALDVETEQIELSAVLQ 262

Query: 186 -----------------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSS 203
                                         S   ++WRM + +SW R FVI+DIPNDW  
Sbjct: 263 EVIDVEVGRGRLYQFNGTIYATFHINWATVSKTFQVWRMRENESWIRVFVIDDIPNDWKW 322

[Close]
BLAST of CaUC06G123060 vs. ExPASy TrEMBL
Match: A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 78/196 (39.80%), Postives = 105/196 (53.57%), Query Frame = 0 

Query: 62  HDLDDDIHVFGFGFNPTSKQYKYLELLSLNTIEELSIIMDVMTFGGCGTELNQNEWMHLH 121
           H+LD D + +G GF+PT+KQYK   +   N     S IM ++TF    T    N+W  LH
Sbjct: 157 HELDGDNYFYGLGFSPTTKQYKMFRVNPNNN----SSIMYILTFRRSETNYKYNQWRQLH 216

Query: 122 FLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALG------------------------ 181
            LP  I   G Y NG IYW+G+++ KENEY IYAL                         
Sbjct: 217 SLPILICCDGVYLNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPG 276

Query: 182 --------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAFED 214
                                + ++++WRM + D W +EFVI+DIPN+W SL L++AFED
Sbjct: 277 VSLKQFNGSVYATFYIDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPNNWCSLTLIKAFED 336

[Close]
BLAST of CaUC06G123060 vs. ExPASy TrEMBL
Match: A0A5D3DMB7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 78/196 (39.80%), Postives = 105/196 (53.57%), Query Frame = 0 

Query: 62  HDLDDDIHVFGFGFNPTSKQYKYLELLSLNTIEELSIIMDVMTFGGCGTELNQNEWMHLH 121
           H+LD D + +G GF+PT+KQYK   +   N     S IM ++TF    T    N+W  LH
Sbjct: 162 HELDGDNYFYGLGFSPTTKQYKMFRVNPNNN----SSIMYILTFRRSETNYKYNQWRQLH 221

Query: 122 FLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALG------------------------ 181
            LP  I   G Y NG IYW+G+++ KENEY IYAL                         
Sbjct: 222 SLPILICCDGVYLNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPG 281

Query: 182 --------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAFED 214
                                + ++++WRM + D W +EFVI+DIPN+W SL L++AFED
Sbjct: 282 VSLKQFNGSVYATFYIDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPNNWCSLTLIKAFED 341

[Close]
BLAST of CaUC06G123060 vs. ExPASy TrEMBL
Match: A0A5A7TE00 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.0e-32
Identity = 82/198 (41.41%), Postives = 107/198 (54.04%), Query Frame = 0 

Query: 63  DLDDDIHVFGFGFNPTSKQYKYLELLSL----NTIEELSIIMDVMTF-GGCGTELNQNEW 122
           +LD DI+ +  GF+PT+KQYK   +          +  S IMDV+TF     T  N ++W
Sbjct: 149 ELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNSSIMDVLTFTRRSETNHNHSQW 208

Query: 123 MHLHFLPFDIILHGDYFNGVIYWLGKEKDKENEYIIYALG-------------------- 182
             LH LP   I +G Y NGVIYW+G ++DKENEYIIYA+                     
Sbjct: 209 RRLHSLPLR-IHNGAYLNGVIYWIGTKEDKENEYIIYAVNVETELIELSFILDLGPCSTS 268

Query: 183 ----------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSSLKLVRAF 214
                                  +  +++WRM + D W REFVI DIP +WSSL L++AF
Sbjct: 269 SHASLKQFNSSVYATFFINPKTYNSSIQVWRMQEKDLWIREFVIVDIPINWSSLTLIKAF 328

[Close]
BLAST of CaUC06G123060 vs. ExPASy TrEMBL
Match: A0A0A0LWG1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-32
Identity = 79/203 (38.92%), Postives = 106/203 (52.22%), Query Frame = 0 

Query: 62  HDLDDDIHVFGFGFNPTSKQYKYLELLS-------LNTIEELSIIMDVMTFGGCGTELN- 121
           H   DD +++GFGF+P +KQYK   +          ++  +    M+V+TFG  GT  + 
Sbjct: 167 HGTFDDFYLYGFGFSPITKQYKLFRVFDKGFRCRRTSSTVDTHYTMEVLTFGRSGTNHSI 226

Query: 122 --QNEWMHLHFLPFDIILHGDYFNGVIYWLGKE--KDKENEYIIYALG------------ 181
              N+W  LH LPF+I+  G Y NG+IYWL KE  KDKE +Y+IYAL             
Sbjct: 227 PIHNQWRRLHTLPFEIVADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVL 286

Query: 182 ---------------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSSLK 214
                                       S  +++WRM + DSW R+FVI DI  +W  L+
Sbjct: 287 QVPSNGYGKIHQFNGTIYATFHINWEKDSRTIQVWRMQEKDSWVRKFVICDISREWIHLQ 346

[Close]
BLAST of CaUC06G123060 vs. ExPASy TrEMBL
Match: A0A0A0LPC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-26
Identity = 77/205 (37.56%), Postives = 101/205 (49.27%), Query Frame = 0 

Query: 63  DLDDDIHVFGFGFNPTSKQYK---------YLELLSLNTI---EELSIIMDVMTFGGCGT 122
           D  DD + +GFG +  SKQYK         Y E   L      ++    M+V+TFG  GT
Sbjct: 184 DTFDDFYHYGFGLSAISKQYKLFRVSEAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGT 243

Query: 123 E--LNQNEWMHLHFLPFDIILHGDYFNGVIYWLGKEKDK--ENEYIIYALG--------- 182
                 N+W HLH L  D+I HG Y NG+IYWLGKEK K  + EY+IYAL          
Sbjct: 244 NHIPIHNQWRHLHNLSCDLI-HGVYLNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMS 303

Query: 183 -----------------------------SSPLLKMWRMFDIDSWTREFVINDIPNDWSS 214
                                         S  +++W M +  SW R+FVI DI  +W  
Sbjct: 304 VILQVQASDGKMHPFNGTIYALFYINWEKDSRTIQVWSMQEKCSWIRQFVIRDISKEWGC 363

The following BLAST results are available for this feature:
BLAST of CaUC06G123060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038890298.14.7e-4045.13F-box protein At3g07870-like [Benincasa hispida][more]
TYK24751.18.5e-3439.80F-box protein [Cucumis melo var. makuwa][more]
KAA0039746.18.5e-3439.80F-box protein [Cucumis melo var. makuwa][more]
KAA0039747.11.0e-3141.41F-box protein [Cucumis melo var. makuwa] >TYK24750.1 F-box protein [Cucumis melo... [more]
XP_038875053.17.0e-2840.21F-box protein At3g07870-like [Benincasa hispida][more]
BLAST of CaUC06G123060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G123060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TCF34.1e-3439.80F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ... [more]
A0A5D3DMB74.1e-3439.80F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140... [more]
A0A5A7TE005.0e-3241.41F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130... [more]
A0A0A0LWG16.6e-3238.92F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 ... [more]
A0A0A0LPC65.4e-2637.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1[more]
BLAST of CaUC06G123060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G123060.1CaUC06G123060.1mRNA