CaUC06G116000 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G116000
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	Ciama_Chr06: 15155339 .. 15155549 (-)
RNA-Seq Expression	CaUC06G116000
Synteny	CaUC06G116000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACATGTTGGTGTCCATGGTAGATTTAACCAAAGTAATACAAAATATCCGGATGATGGTAATAAAAATAATAATAAAAAAAAAAATAAAGATAGTGGCTCATTATCTAGATGAAGCTCATGTAGAAGATGAAAATCTAGATATGCTAAATTGGTGGAAGTTGAGTTATTCTAGATCTAAAATTATTACGAAGTTAGTTCAGGAACATTTA

mRNA sequence

GTACATGTTGGTGTCCATGGTAGATTTAACCAAAGTAATACAAAATATCCGGATGATGATAGTGGCTCATTATCTAGATGAAGCTCATGTAGAAGATGAAAATCTAGATATGCTAAATTGGTGGAAGTTGAGTTATTCTAGATCTAAAATTATTACGAAGTTAGTTCAGGAACATTTA

Coding sequence (CDS)

ATGTTGGTGTCCATGGTAGATTTAACCAAAGTAATACAAAATATCCGGATGATGATAGTGGCTCATTATCTAGATGAAGCTCATGTAGAAGATGAAAATCTAGATATGCTAAATTGGTGGAAGTTGAGTTATTCTAGATCTAAAATTATTACGAAGTTAGTTCAGGAACATTTA

Protein sequence

MLVSMVDLTKVIQNIRMMIVAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQEHL

Homology

[Close]

BLAST of CaUC06G116000 vs. NCBI nr
Match: KAA0032266.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa] >TYK17071.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 165 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 201

[Close]

BLAST of CaUC06G116000 vs. NCBI nr
Match: XP_016899473.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 235 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 271

[Close]

BLAST of CaUC06G116000 vs. NCBI nr
Match: XP_016899474.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 172 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 208

[Close]

BLAST of CaUC06G116000 vs. NCBI nr
Match: XP_016899471.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Cucumis melo] >XP_016899472.1 PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 235 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 271

[Close]

BLAST of CaUC06G116000 vs. NCBI nr
Match: KAA0025878.1 (zinc finger BED domain-containing protein RICESLEEPER 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 20 VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
          VA YLDEA +EDE LD+LNWWK++ SR KII+++ ++
Sbjct: 35 VARYLDEARIEDEYLDLLNWWKMNSSRFKIISQVARD 71

[Close]

BLAST of CaUC06G116000 vs. ExPASy TrEMBL
Match: A0A1S4DU07 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990533 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 235 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 271

[Close]

BLAST of CaUC06G116000 vs. ExPASy TrEMBL
Match: A0A5A7SQH2 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00170 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 165 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 201

[Close]

BLAST of CaUC06G116000 vs. ExPASy TrEMBL
Match: A0A1S4DU44 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990533 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 235 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 271

[Close]

BLAST of CaUC06G116000 vs. ExPASy TrEMBL
Match: A0A1S4DU09 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC107990533 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 20  VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
           V  YLDEAH++DE LD+LNWWK++ SR KII+++V++
Sbjct: 172 VTRYLDEAHIKDEYLDLLNWWKVNSSRFKIISQVVRD 208

[Close]

BLAST of CaUC06G116000 vs. ExPASy TrEMBL
Match: A0A5A7SI78 (Zinc finger BED domain-containing protein RICESLEEPER 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001590 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 20 VAHYLDEAHVEDENLDMLNWWKLSYSRSKIITKLVQE 57
          VA YLDEA +EDE LD+LNWWK++ SR KII+++ ++
Sbjct: 35 VARYLDEARIEDEYLDLLNWWKMNSSRFKIISQVARD 71

The following BLAST results are available for this feature:

BLAST of CaUC06G116000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032266.1	2.4e-04	59.46	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis...	[more]
XP_016899473.1	2.4e-04	59.46	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform ...	[more]
XP_016899474.1	2.4e-04	59.46	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform ...	[more]
XP_016899471.1	2.4e-04	59.46	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform ...	[more]
KAA0025878.1	5.3e-04	59.46	zinc finger BED domain-containing protein RICESLEEPER 4-like [Cucumis melo var. ...	[more]

BLAST of CaUC06G116000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G116000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DU07	1.2e-04	59.46	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 OS=Cucum...	[more]
A0A5A7SQH2	1.2e-04	59.46	Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum...	[more]
A0A1S4DU44	1.2e-04	59.46	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 OS=Cucum...	[more]
A0A1S4DU09	1.2e-04	59.46	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum...	[more]
A0A5A7SI78	2.6e-04	59.46	Zinc finger BED domain-containing protein RICESLEEPER 4-like OS=Cucumis melo var...	[more]

BLAST of CaUC06G116000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G116000.1	CaUC06G116000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity