CaUC06G113200 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGGTTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTTTAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATTGAGCCTATACAAATCAATGGAACCTACATATAG ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGGTTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTTTAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATTGAGCCTATACAAATCAATGGAACCTACATATAG ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGGTTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTTTAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATTGAGCCTATACAAATCAATGGAACCTACATATAG MQITPSILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTYI Homology
BLAST of CaUC06G113200 vs. NCBI nr
Match: TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0
BLAST of CaUC06G113200 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 115.5 bits (288), Expect = 3.1e-22 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 0
BLAST of CaUC06G113200 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia]) HSP 1 Score: 112.1 bits (279), Expect = 3.4e-21 Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0
BLAST of CaUC06G113200 vs. NCBI nr
Match: XP_011650214.1 (uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetical protein Csa_022537 [Cucumis sativus]) HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20 Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 0
BLAST of CaUC06G113200 vs. NCBI nr
Match: KAA0044449.1 (hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]) HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19 Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 0
BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0
BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 0
BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21 Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0
BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5A7TTA1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001820 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20 Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 0
BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18 Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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