CaUC06G113200 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G113200
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationCiama_Chr06: 8096525 .. 8096887 (-)
RNA-Seq ExpressionCaUC06G113200
SyntenyCaUC06G113200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGGTTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTTTAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATTGAGCCTATACAAATCAATGGAACCTACATATAG

mRNA sequence

ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGGTTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTTTAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATTGAGCCTATACAAATCAATGGAACCTACATATAG

Coding sequence (CDS)

ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGGTTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTTTAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATTGAGCCTATACAAATCAATGGAACCTACATATAG

Protein sequence

MQITPSILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTYI
Homology
BLAST of CaUC06G113200 vs. NCBI nr
Match: TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 10  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCG 69
           MW+  N     VF+ NFS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C 
Sbjct: 1   MWNDQNFSIQSVFKGNFSVSIQVGSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICF 60

Query: 70  ECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
             W L  DFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Sbjct: 61  PTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKF 110

BLAST of CaUC06G113200 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-22
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 0

Query: 10  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCG 69
           MW+  N     VF+  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL++++ +C 
Sbjct: 1   MWNDQNFSILSVFKGAFSVSIQVGSNNGAFWWLSAIYGPAKRKNRPLFWEELEHLKSICL 60

Query: 70  ECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
             W L  DFNV  W  ETT+ +P+ ++MRRFNS+I+N +LI+P   N  Y
Sbjct: 61  PTWILGGDFNVIRWKEETTTKNPALLSMRRFNSFISNCNLIDPPLSNAKY 110

BLAST of CaUC06G113200 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-21
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0

Query: 7   ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRY 66
           I+++WD L+  A +V   +FS+S+     D   WWL+G+Y    ++KR  FW+EL ++  
Sbjct: 70  IILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNG 129

Query: 67  LCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
           LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I    LI+P   NG Y
Sbjct: 130 LCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQY 182

BLAST of CaUC06G113200 vs. NCBI nr
Match: XP_011650214.1 (uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetical protein Csa_022537 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 0

Query: 7   ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRY 66
           IL+MWD L H+  +     F++S   +  DG  WW++ +Y L +R +R +FW+EL N+  
Sbjct: 70  ILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSFWQELMNLAQ 129

Query: 67  LCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
            CG  W LA DFN   W  ET+S +P + +M +FN  I N+ L++P   NG+Y
Sbjct: 130 TCGSNWLLAGDFNAIRWNIETSSNNPFKYSMTKFNYLILNLGLVDPPLTNGSY 182

BLAST of CaUC06G113200 vs. NCBI nr
Match: KAA0044449.1 (hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 0

Query: 20  DVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFN 79
           DV +  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFN
Sbjct: 689 DVIDGAFSVSIQVDSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFN 748

Query: 80  VYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
           V  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Sbjct: 749 VIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKF 788

BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 10  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCG 69
           MW+  N     VF+ NFS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C 
Sbjct: 1   MWNDQNFSIQSVFKGNFSVSIQVGSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICF 60

Query: 70  ECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
             W L  DFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Sbjct: 61  PTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKF 110

BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 0

Query: 10  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCG 69
           MW+  N     VF+  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL++++ +C 
Sbjct: 1   MWNDQNFSILSVFKGAFSVSIQVGSNNGAFWWLSAIYGPAKRKNRPLFWEELEHLKSICL 60

Query: 70  ECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
             W L  DFNV  W  ETT+ +P+ ++MRRFNS+I+N +LI+P   N  Y
Sbjct: 61  PTWILGGDFNVIRWKEETTTKNPALLSMRRFNSFISNCNLIDPPLSNAKY 110

BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0

Query: 7   ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRY 66
           I+++WD L+  A +V   +FS+S+     D   WWL+G+Y    ++KR  FW+EL ++  
Sbjct: 70  IILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNG 129

Query: 67  LCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
           LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I    LI+P   NG Y
Sbjct: 130 LCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQY 182

BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5A7TTA1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001820 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-20
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 0

Query: 20  DVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFN 79
           DV +  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFN
Sbjct: 689 DVIDGAFSVSIQVDSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFN 748

Query: 80  VYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
           V  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Sbjct: 749 VIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKF 788

BLAST of CaUC06G113200 vs. ExPASy TrEMBL
Match: A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 0

Query: 26  FSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTF 85
           FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFNV  W  
Sbjct: 221 FSVSIQVGSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKE 280

Query: 86  ETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY 120
           ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Sbjct: 281 ETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKF 314

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ99326.12.4e-2244.55LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.13.1e-2246.36LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
XP_022145142.13.4e-2140.71uncharacterized protein LOC111014657 [Momordica charantia][more]
XP_011650214.11.3e-2039.82uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetica... [more]
KAA0044449.11.9e-1945.00hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJP31.1e-2244.55LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I71.5e-2246.36LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1CVN21.6e-2140.71uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A5A7TTA19.0e-2045.00DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3E0F61.3e-1845.74LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 6..118
e-value: 4.2E-6
score: 28.7
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 20..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G113200.1CaUC06G113200.1mRNA