CaUC06G107800 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G107800
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Trigger_N domain-containing protein
Location	Ciama_Chr06: 1508052 .. 1512435 (-)
RNA-Seq Expression	CaUC06G107800
Synteny	CaUC06G107800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCAACAAAAACTCTTGAAAAAGAAATTCTAGAAAAAGAAAAAAAGAAAAAAACAGAAGGAAAAAAGAAGCCACAACGGCATCGTATCTGGACTCGGATAAGTCTCTACTCTGAGAACCGGAGAAAGAAACTTCAAACTGAAGCGCTGAGCCGCGCTTGGAAAAATGGTGTCCGCCACCGCCACCGCCACCGCCACCGCAACCGCAACCGCAACCGCAACTGCAACGGTAACCAACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTAAGCAATTCTATGCATTAGCCTTTTTCGATTCTAAATATTCCTCAGAAACCAAACCAATGACTCGAATCTCTAAGCTCCACCGCATTTTGCGGCCTTCCGAATAAGTTTAGGATATTTTCACTTCAAATTCGCTTTTTGTGTTTCAGGTTCCTGTTAAGGGCTATTGCTGCAATGCCCTGGTTTGTCTAAACTTTGGACGTGTTGAATTGGATAATGTACAAGATGGGTTGTGTAGGAGGTAAACATGTATTTTGGTTAGTTTCCAATTTCGATGTTGATTCTTAATTTCTTGTTTGTTTAATGAGAAGTGTAATGACATATATAGCTTGTTCGTTTTCTATTTGCTGAATTGTGCATAAAAACTGATGGATAGAAGTGGGGAACATTTTTCATTGCCAGGTCGTCATTTTCTCATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTAATTCTGCATACTTCGTTATCATCTTGGTTGAACCTTTTACAGTAAAGACTGAATTACATATTTTAAACTATAAGAACTAAGTCGTTTCATACTTAAAGTTGATTAAGTCGGTTATTGGAAATTTTAATCTACAGGAATCAAATTGTTAGATACTGAGGTTCGTGGACTAATTGAATTGTTTTATTTGATAGTATATTTTAACCTTTACAATTATTCTTTTTTGCTCGTCCCCTTGTTTTCTGGGAGTTTAGTTTATTTTTAATGTAGGATGGGAAGAGAAGTACAAAAATAGAGTAATTGGGAAGCGAATGACATAAGTAAGATAGTATTACTGGTGAAAATTCCTGTTTAGTATGCACGAAGAGAAGAAAGCATTATTATCTTCTATATCATGTATTAGAAAATTGTAATAAATCGTTGGTAAGAACACAATAACGGTTTTGAATATTGCAAATCATGCTTATGTAACATGATTGTTGCCCTAATAAATCGTGGGTAAGAAACACAATAACAGATTTGGTAAAAATTATCCCCGTTTTGTCATTATTTTGTGAGTTATTAACAGTCACTTGTCAATCAACTCTAGTTGTACAAAAAAGACCCTTTTCAGCTTAGGCTTATGTTGTTTTGTTGGTCTTCTGTTTTGATGTCATAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAAGTAAGGCTTACCCATGTGAACTAGTTGAAGCATCCATTACAATTTTTGTTGCAGCATAGAGTTTTTTTTTTTTTTTTCCTTTCCTTTCTTTTCTTTTTTTAATTGAACTTTAAGAATCAATTTTGTTAATGGTATGAAATTACGAAAGAAGGGGGAAAAACCTACTCCAAATGAGACTCTCCAATTGGATATAAAAGAAGCATGGTGAAAGAGATGAGAGCATTCACACTAAGAAATTGTTGTAAAAGCGATAGAAGAAAGCCCTTGTAAAGTGCATCCATAAGAGCTTTTTTTCTTAGTTGAAAGGATGACCCCCAAAAACATACTAGAGGAGGAGGAGGAGATTTTGAGGGAGAGCTGTATGTCGACCGCCCAAAGCATGATAGCTGCCCCCATAATTTTGATGCAAATTTGCAGGACACAGAAAGACCTTGAGACTTAGGAGCTGTCTATGCGCATGACACAAACTACTATACTTTGTTCAAGAAAATAATGCATCCTTGAGATACCACTGTCTCAATATCTAATCTCTCACTCTCCCAATGCCACCTCACTTAGTTACAACTTCTGCCCACCAAAGTTTACGAACAATCTATCCTCAATGTAAGATTTTGTTAGGAATGTTAGCAGGGAACTATTTGGGATATTATTAGGTTATTTGGAGGGCATAGTTTGTTAGAAAAGAGGTTATAAACGCAGTTGAATAGAGGGGTTTGAGATAGGCAGAGTATAGACATTTTGGGAGAGTCCACGCCTCTCAAAGTGTTTTGTTTTCGTAAATTTTCTTTTATATGGGAATACAATTTAAGTGTTATTTTCTTACTTCCATTCTCAATCAAAATTGGGTTCCTATCATCCTTCCCTTTATCATCCTTCCCTTTCATGTTTTCTTTGGAACGCATTTATTGTTAGTGACCTATAAAAAATGTCTAATGAAATATTATTAACAGCTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGTAGTACCACGATTTTCCTCCTCTTCCACCTCGAATGTTACAACCATTCATTCATTTGCAACATAAGTCTTGTACATGTTCACTATCCATGTAGACAAATATGGGGATTGAGAAGTGCCTTTCCTGTCCATATGCGTTCATATGTGTAGCTGCTTTTACAGCTTATAAGTTCTTATTTCTCGTAGCAGATGACTTGACTTTATATGGTTTCTAATGTTTTCCTGTCTTCATGCCGTGGATGCTTTGCCAGGGAAAACATCAAATGTGAGTTGCTTCTCTTTGCTTTTTATACTTTACCCTTTGGGTTTCCAAAAATTTTCAAATTCGTTGTTTAGTTCTAACTCATTGAATATATGCCTTGTCATCTTTGATAATATTCCCAAGTTTTGGTATTTTTATTTGTAATGATTTAGTTTTGATGTTTTATTGTGAACACATTTGAGTCATCGAGTTACAAATCTTATTATGAAGTTGATTGGAAAATAATCTGTTCATGAAATATGGGCAAGTTATAAGAGGTGCTTCTCGCACTTTAGCCTCGAACATTTGTTTTTTGATTTGGTTAAATTTGATTTCACTCATGATTCATTTTTTCTCAGTATCCTTGTTCATTTTTTGGCATGTTATGCGGGGATTTACATCCTAGTTACAAATAGTATTCTATTCTTCCACAAGGTTTTTATTTCTCAATAATTAATTCCTCCAGGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTTATCCTCATTGCTTTGCTTCTTATACCTAGTGCCTACGTGGTGACTGTAACTTGGAGATGTTTTTAAATTGGTTTTTCTAGATAGCTTGTAGAAGTCAATGATATTTGGGTAAATAAAATCACTATCCATGAACAACACACCATTTCAAAAGATATAACAAATTTTACGAATAGACAAATGTCTTGTTAATTTGGCTTGGCGTGGCTAACAAATGATGGATGGAAAGAAGTTAACCGCTGGATAAAATAGGAGTGACGTGGTTTATGGATTGAATTTGATATATTACTTCAAAGTAAATGATATGTTTCATGTGTTGCCTTCTTTTGTTAAAGTTGTCCATTTGCCTTCTCTATTATTTGTCTAGTTGTGCCCAATCAACTGGTGTCTATCTAATTAGAGCATATGATGTTACCATCTAGTAAATTGTATTGATGTTAGAAAATAGATATACTATAATAAAACCATTCAAAATTTAAATAACTAATTGATTTTTTTTTAAGTTCAAAGACTAAATGGACATGGTTCACAATTAAATTTGTAATTTATCCAAATGTGATTATCCAAATATCAAAAACATAAGCTCTTTTTTTTTTCTTTTTTCTTTGGACTCCAATACAGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGAGCCAAACAGGTCCCATTTTCCAAGTGAAGATTTTGTCCACTTATTCTTCAATGGGCCTCCTTGTGTCAAAGTCTTGGAAATTTTACTTGAAATTGATGAAAGCTTATTTTGCATAGTTGAATACCAATTCTAGTTGTTTGTTTCCATGTAATTTGTTCTGTTGAAGTAAAAAATAAAACCATCTAATTCGTACATGTGAAATCAATAGTTTGGAGTTGAAATGATTGATTGATTAGTTAGTTTTGATT

mRNA sequence

AAAACCAACAAAAACTCTTGAAAAAGAAATTCTAGAAAAAGAAAAAAAGAAAAAAACAGAAGGAAAAAAGAAGCCACAACGGCATCGTATCTGGACTCGGATAAGTCTCTACTCTGAGAACCGGAGAAAGAAACTTCAAACTGAAGCGCTGAGCCGCGCTTGGAAAAATGGTGTCCGCCACCGCCACCGCCACCGCCACCGCAACCGCAACCGCAACCGCAACTGCAACGGTAACCAACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTTCCTGTTAAGGGCTATTGCTGCAATGCCCTGGTTTGTCTAAACTTTGGACGTGTTGAATTGGATAATGTACAAGATGGGTTGTGTAGGAGGTAAACATGTATTTTGGTCGTCATTTTCTCATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGAGCCAAACAGGTCCCATTTTCCAAGTGAAGATTTTGTCCACTTATTCTTCAATGGGCCTCCTTGTGTCAAAGTCTTGGAAATTTTACTTGAAATTGATGAAAGCTTATTTTGCATAGTTGAATACCAATTCTAGTTGTTTGTTTCCATGTAATTTGTTCTGTTGAAGTAAAAAATAAAACCATCTAATTCGTACATGTGAAATCAATAGTTTGGAGTTGAAATGATTGATTGATTAGTTAGTTTTGATT

Coding sequence (CDS)

ATGTACAAGATGGGTTGTGTAGGAGGTAAACATGTATTTTGGTCGTCATTTTCTCATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGA

Protein sequence

MYKMGCVGGKHVFWSSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN

Homology

[Close]

BLAST of CaUC06G107800 vs. NCBI nr
Match: XP_038906537.1 (uncharacterized protein LOC120092511 [Benincasa hispida])

HSP 1 Score: 317.8 bits (813), Expect = 6.5e-83
Identity = 164/176 (93.18%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SSFS+S HK+GSRFLSKPTS+ASSG EAAITDYKGNAITLKNAKVVVESE+EN+IQLRVD
Sbjct: 56  SSFSYSSHKVGSRFLSKPTSIASSGLEAAITDYKGNAITLKNAKVVVESEEENKIQLRVD 115

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRV KFVIQEI
Sbjct: 116 LTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVIKFVIQEI 175

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 191
           LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGK+FGFNAILELES SD EN
Sbjct: 176 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKEFGFNAILELESASDAEN 231

[Close]

BLAST of CaUC06G107800 vs. NCBI nr
Match: XP_008460020.1 (PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo])

HSP 1 Score: 312.0 bits (798), Expect = 3.5e-81
Identity = 159/176 (90.34%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SSFS+S H++GSRFLSKPTS+ASSG EAA+TDYKGNAITLKNAKVVVESE+EN+IQLRVD
Sbjct: 59  SSFSYSSHRIGSRFLSKPTSIASSGLEAALTDYKGNAITLKNAKVVVESEEENKIQLRVD 118

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI
Sbjct: 119 LTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 178

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 191
           LNSTMADYAKKENINVKD KVNTTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 179 LNSTMADYAKKENINVKDNKVNTTQTADELKVLFNPGKEFGFNAILELESASDAES 234

[Close]

BLAST of CaUC06G107800 vs. NCBI nr
Match: XP_011656737.1 (uncharacterized protein LOC101212225 [Cucumis sativus] >KGN46335.1 hypothetical protein Csa_004841 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 3.0e-80
Identity = 158/176 (89.77%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SSFS+S HK+GSRFLSKPTS+ASSG EAAITDYKGN ITLKNAKVVVESE+EN+IQLRVD
Sbjct: 58  SSFSYSFHKIGSRFLSKPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVD 117

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKF+IQEI
Sbjct: 118 LTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEI 177

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 191
           LNSTM DYAKKENINVKDKKV+TTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 178 LNSTMVDYAKKENINVKDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAES 233

[Close]

BLAST of CaUC06G107800 vs. NCBI nr
Match: XP_022155406.1 (uncharacterized protein LOC111022553 [Momordica charantia])

HSP 1 Score: 301.6 bits (771), Expect = 4.8e-78
Identity = 152/172 (88.37%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SSFS SPHK+GSRFLS+PTS+ASSG EAAITDYKGNAI LKNAK+VVESEDEN IQLRVD
Sbjct: 54  SSFSCSPHKLGSRFLSRPTSIASSGLEAAITDYKGNAIALKNAKIVVESEDENLIQLRVD 113

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           L+GDETQK+FDQVL NLARSAPPMPGFR QKGGKTSNVPKSFLLEVLG++RVTKFVIQEI
Sbjct: 114 LSGDETQKIFDQVLTNLARSAPPMPGFRMQKGGKTSNVPKSFLLEVLGEERVTKFVIQEI 173

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS 187
           LNSTMADYAKKEN+NVKDKKVNTTQTADELK+LF+PGK+FGFNAILELES +
Sbjct: 174 LNSTMADYAKKENVNVKDKKVNTTQTADELKLLFTPGKEFGFNAILELESAN 225

[Close]

BLAST of CaUC06G107800 vs. NCBI nr
Match: KAG6592974.1 (hypothetical protein SDJN03_12450, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-72
Identity = 148/169 (87.57%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SS S+SP  +GSRFLS+PT++ SSG EAAITDYKG AITLKNAK+VVESEDEN+IQLRVD
Sbjct: 54  SSVSYSPLVVGSRFLSRPTAIGSSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVD 113

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI
Sbjct: 114 LTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 173

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE 184
           LNSTMADYAKKENI VKDK VNTTQT DELK LF PGK+FGFNAILELE
Sbjct: 174 LNSTMADYAKKENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELE 221

[Close]

BLAST of CaUC06G107800 vs. ExPASy Swiss-Prot
Match: Q8YQX9 (Trigger factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=tig PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-08
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 58  KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 117
           KV  E    +QI L +++T + TQK ++QV+ NL+R+   +PGFR+ K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK------VPRQVL 61

Query: 118 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 177
           L+ LGK  +    ++E+L   +    K+E+I    +      + D+L   + PG+   F 
Sbjct: 62  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQP-RLRSSFDDLINSYEPGQPLTFT 119

Query: 178 AILELE 184
           A +++E
Sbjct: 122 AAVDVE 119

[Close]

BLAST of CaUC06G107800 vs. ExPASy Swiss-Prot
Match: Q3M725 (Trigger factor OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=tig PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-08
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 58  KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 117
           KV  E    +QI L +++T + TQK ++QV+ NL+R+   +PGFR+ K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK------VPRQVL 61

Query: 118 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 177
           L+ LGK  +    ++E+L   +    K+E+I    +      + D+L   + PG+   F 
Sbjct: 62  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQP-RLRSSFDDLINSYEPGQPLTFT 119

Query: 178 AILELE 184
           A +++E
Sbjct: 122 AAVDVE 119

[Close]

BLAST of CaUC06G107800 vs. ExPASy Swiss-Prot
Match: B1XL18 (Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=tig PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 35/125 (28.00%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 58  KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 117
           KV+ E    +Q+ L +++  D TQK +D  +  LAR+   +PGFR+ K      VPK  L
Sbjct: 2   KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTV-NLPGFRKGK------VPKQIL 61

Query: 118 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 177
           ++ LG +R+   V++++++ ++     +ENI           + D+L   + PG+   F 
Sbjct: 62  IQRLGPNRIKASVLEDLIDDSLKAAIAQENIEALG-NFQLKSSFDDLISAYKPGEASSFK 118

Query: 178 AILEL 183
           A +++
Sbjct: 122 AAVDV 118

[Close]

BLAST of CaUC06G107800 vs. ExPASy Swiss-Prot
Match: B2IT89 (Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=tig PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-06
Identity = 37/126 (29.37%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 58  KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 117
           KV  E    +QI L +++T + T++ ++QV+ NLA +A  +PGFRR K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITKQTYEQVIKNLASTA-NIPGFRRGK------VPRPIL 61

Query: 118 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 177
           L+ LG  R+    ++E++   +    K+E I    +      + ++L   + PGK     
Sbjct: 62  LQRLGTTRIKAAALEELIQDGIEQAVKQEAIPAIGQP-QLRSSFEDLINNYEPGKPLTIL 119

Query: 178 AILELE 184
           A +++E
Sbjct: 122 AAVDVE 119

[Close]

BLAST of CaUC06G107800 vs. ExPASy TrEMBL
Match: A0A1S3CBN2 (uncharacterized protein LOC103498959 OS=Cucumis melo OX=3656 GN=LOC103498959 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 159/176 (90.34%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SSFS+S H++GSRFLSKPTS+ASSG EAA+TDYKGNAITLKNAKVVVESE+EN+IQLRVD
Sbjct: 59  SSFSYSSHRIGSRFLSKPTSIASSGLEAALTDYKGNAITLKNAKVVVESEEENKIQLRVD 118

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI
Sbjct: 119 LTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 178

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 191
           LNSTMADYAKKENINVKD KVNTTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 179 LNSTMADYAKKENINVKDNKVNTTQTADELKVLFNPGKEFGFNAILELESASDAES 234

[Close]

BLAST of CaUC06G107800 vs. ExPASy TrEMBL
Match: A0A0A0K988 (Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086160 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 158/176 (89.77%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SSFS+S HK+GSRFLSKPTS+ASSG EAAITDYKGN ITLKNAKVVVESE+EN+IQLRVD
Sbjct: 58  SSFSYSFHKIGSRFLSKPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVD 117

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKF+IQEI
Sbjct: 118 LTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEI 177

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 191
           LNSTM DYAKKENINVKDKKV+TTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 178 LNSTMVDYAKKENINVKDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAES 233

[Close]

BLAST of CaUC06G107800 vs. ExPASy TrEMBL
Match: A0A6J1DRL2 (uncharacterized protein LOC111022553 OS=Momordica charantia OX=3673 GN=LOC111022553 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.3e-78
Identity = 152/172 (88.37%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SSFS SPHK+GSRFLS+PTS+ASSG EAAITDYKGNAI LKNAK+VVESEDEN IQLRVD
Sbjct: 54  SSFSCSPHKLGSRFLSRPTSIASSGLEAAITDYKGNAIALKNAKIVVESEDENLIQLRVD 113

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           L+GDETQK+FDQVL NLARSAPPMPGFR QKGGKTSNVPKSFLLEVLG++RVTKFVIQEI
Sbjct: 114 LSGDETQKIFDQVLTNLARSAPPMPGFRMQKGGKTSNVPKSFLLEVLGEERVTKFVIQEI 173

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS 187
           LNSTMADYAKKEN+NVKDKKVNTTQTADELK+LF+PGK+FGFNAILELES +
Sbjct: 174 LNSTMADYAKKENVNVKDKKVNTTQTADELKLLFTPGKEFGFNAILELESAN 225

[Close]

BLAST of CaUC06G107800 vs. ExPASy TrEMBL
Match: A0A6J1H8V8 (uncharacterized protein LOC111461115 OS=Cucurbita moschata OX=3662 GN=LOC111461115 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.5e-72
Identity = 152/184 (82.61%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SS S+SP  +GSRFLS+PT++ASSG EAAITDYKG AITLKNAK+VVESEDEN+IQLRVD
Sbjct: 54  SSVSYSPLVVGSRFLSRPTAIASSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVD 113

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAP MPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI
Sbjct: 114 LTGDETQKVFDQVLTNLARSAPLMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 173

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL--------ELESGS 191
           LNSTM DYAKKENI VKDK VNTTQT DELK LF PGK+FGFNAIL        ELES S
Sbjct: 174 LNSTMVDYAKKENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELESAS 233

[Close]

BLAST of CaUC06G107800 vs. ExPASy TrEMBL
Match: A0A6J1KVH6 (uncharacterized protein LOC111497577 OS=Cucurbita maxima OX=3661 GN=LOC111497577 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.5e-72
Identity = 152/182 (83.52%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 15  SSFSHSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVD 74
           SS S+S   +GSRFLS+PT++ASSG EAAITDYKG AITLKNAK+VVESEDEN+IQLRV+
Sbjct: 58  SSVSYSLLVVGSRFLSRPTAIASSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVN 117

Query: 75  LTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 134
           LTGDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI
Sbjct: 118 LTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEI 177

Query: 135 LNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE------SGSDG 191
           LNSTMADYAKKENI VKDK VNTTQT DELKVLF PGK+FGFNAILELE      S S+ 
Sbjct: 178 LNSTMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAILELELEPELDSASED 237

[Close]

BLAST of CaUC06G107800 vs. TAIR 10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 53/126 (42.06%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 61  VESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEV 120
           VE+E  N++++ V ++G++TQ VF+ V   +  +A P+PGFRR KGGKT N+PK  LLE+
Sbjct: 75  VETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEI 134

Query: 121 LGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL 180
           LG  +V K VI++++NS + DY K+E++ V  K++   Q+ ++L+  F PG+ F F+A +
Sbjct: 135 LGYSKVYKQVIKKLINSAIEDYVKQEDLKV-GKELTVVQSYEDLEETFEPGESFSFDATI 194

Query: 181 ELESGS 187
           +L+  S
Sbjct: 195 KLQEAS 199

[Close]

BLAST of CaUC06G107800 vs. TAIR 10
Match: AT2G30695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 53/126 (42.06%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 61  VESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEV 120
           VE+E  N++++ V ++G++TQ VF+ V   +  +A P+PGFRR KGGKT N+PK  LLE+
Sbjct: 75  VETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEI 134

Query: 121 LGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL 180
           LG  +V K VI++++NS + DY K+E++ V  K++   Q+ ++L+  F PG+ F F+A +
Sbjct: 135 LGYSKVYKQVIKKLINSAIEDYVKQEDLKV-GKELTVVQSYEDLEETFEPGESFSFDATI 194

Query: 181 ELESGS 187
           +L+  S
Sbjct: 195 KLQEAS 199

The following BLAST results are available for this feature:

BLAST of CaUC06G107800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906537.1	6.5e-83	93.18	uncharacterized protein LOC120092511 [Benincasa hispida]	[more]
XP_008460020.1	3.5e-81	90.34	PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo]	[more]
XP_011656737.1	3.0e-80	89.77	uncharacterized protein LOC101212225 [Cucumis sativus] >KGN46335.1 hypothetical ...	[more]
XP_022155406.1	4.8e-78	88.37	uncharacterized protein LOC111022553 [Momordica charantia]	[more]
KAG6592974.1	1.0e-72	87.57	hypothetical protein SDJN03_12450, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CaUC06G107800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8YQX9	5.4e-08	30.95	Trigger factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690...	[more]
Q3M725	5.4e-08	30.95	Trigger factor OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292...	[more]
B1XL18	1.6e-07	28.00	Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=320...	[more]
B2IT89	8.7e-06	29.37	Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN...	[more]

BLAST of CaUC06G107800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBN2	1.7e-81	90.34	uncharacterized protein LOC103498959 OS=Cucumis melo OX=3656 GN=LOC103498959 PE=...	[more]
A0A0A0K988	1.5e-80	89.77	Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086160 P...	[more]
A0A6J1DRL2	2.3e-78	88.37	uncharacterized protein LOC111022553 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1H8V8	1.5e-72	82.61	uncharacterized protein LOC111461115 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A6J1KVH6	2.5e-72	83.52	uncharacterized protein LOC111497577 OS=Cucurbita maxima OX=3661 GN=LOC111497577...	[more]

BLAST of CaUC06G107800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30695.1	1.3e-25	42.06	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]
AT2G30695.2	1.3e-25	42.06	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036611	Trigger factor ribosome-binding domain superfamily	GENE3D	3.30.70.1050		coord: 58..183 e-value: 4.6E-21 score: 77.1
IPR036611	Trigger factor ribosome-binding domain superfamily	SUPERFAMILY	102735	Trigger factor ribosome-binding domain	coord: 58..182
IPR008881	Trigger factor, ribosome-binding, bacterial	PFAM	PF05697	Trigger_N	coord: 58..182 e-value: 7.5E-12 score: 45.7
None	No IPR available	PANTHER	PTHR30560:SF4	OS01G0894700 PROTEIN	coord: 22..186
IPR005215	Trigger factor	PANTHER	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	coord: 22..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G107800.1	CaUC06G107800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0015031	protein transport
biological_process	GO:0043335	protein unfolding
biological_process	GO:0006457	protein folding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0043022	ribosome binding