CaUC04G078560 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G078560
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like
Location	Ciama_Chr04: 27839798 .. 27840504 (-)
RNA-Seq Expression	CaUC04G078560
Synteny	CaUC04G078560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTTAAGCAAGGTGCTTACGGTATAATAACCAAAGGATTCATCCAAAGCAATCATTGTTGTGCTACTGTGGTCACCACAAAGTATTCCAATCTCGACTTTGGGACGGTTTGGGAGACCGTAGCGGAATGTGTTTGTAATGTAATGTAATCCAAAATCCATGTTTGGATTGAGCATTGTGGGTTCGATTTATAAGATAAAACTAATTCTATTTTGGTAGTTTTCAATCCAACCATCTTGCCCACTATTTTCATGCTTCATAATCTTATTTTTGTTTCGCCCTAGATTCCTTGCTCATTCTAGAACTCATCTAATTCATAGTAATATTAATTACATCCTAGCTCGCCAAAGAACCTTCTATCTTATTCTATTCACTTCATAGGTTATTATATACATTGTTTTCCAACAATTTTAATTGATTAATTATTGCTTATAAAACATACACATATACTTCATCGCTTTAATTCTGTTGCTATTCTCGTGTCCATAATTGAGGCAGGCCCTTGTAAACCAAGATCTTGGATTCAATGGAAACCTTCTTGTCCAGCGATTAGTTGGAGCTCACGTTGAACTTGCCTCAAAAGAAGATCTCGCAAAAATTGGGTCTACTGTGGTTTGTTGTCTTTTAATTTTTGTTCTTTCATTTCGGATTTTATGGAAATTAATTTTGAAATTACTTTTAGTCGGTTCAAAACCATAATTAA

mRNA sequence

ATGCTTCAAGGTGCTTACGGTATAATAACCAAAGGATTCATCCAAAGCAATCATTGTTGTGCTACTGTGGTCACCACAAAGTATTCCAATCTCGACTTTGGGACGGTTTGGGAGACCGTAGCGGAATGTGTTTGTAATGCCCTTGTAAACCAAGATCTTGGATTCAATGGAAACCTTCTTGTCCAGCGATTAGTTGGAGCTCACGTTGAACTTGCCTCAAAAGAAGATCTCGCAAAAATTGGGTCTACTGTGTCGGTTCAAAACCATAATTAA

Coding sequence (CDS)

ATGCTTCAAGGTGCTTACGGTATAATAACCAAAGGATTCATCCAAAGCAATCATTGTTGTGCTACTGTGGTCACCACAAAGTATTCCAATCTCGACTTTGGGACGGTTTGGGAGACCGTAGCGGAATGTGTTTGTAATGCCCTTGTAAACCAAGATCTTGGATTCAATGGAAACCTTCTTGTCCAGCGATTAGTTGGAGCTCACGTTGAACTTGCCTCAAAAGAAGATCTCGCAAAAATTGGGTCTACTGTGTCGGTTCAAAACCATAATTAA

Protein sequence

MLQGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQRLVGAHVELASKEDLAKIGSTVSVQNHN

Homology

[Close]

BLAST of CaUC04G078560 vs. NCBI nr
Match: XP_022949139.1 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Cucurbita moschata] >KAG7037073.1 putative D-cysteine desulfhydrase 1, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 8.8e-14
Identity = 50/80 (62.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVNQD G  GNLLV+
Sbjct: 164 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNQDPGLTGNLLVE 223

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHVEL SKE+ AKIGS
Sbjct: 224 RLVGAHVELISKEEYAKIGS 238

[Close]

BLAST of CaUC04G078560 vs. NCBI nr
Match: XP_023522011.1 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 8.8e-14
Identity = 50/80 (62.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVNQD G  GNLLV+
Sbjct: 164 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNQDPGLTGNLLVE 223

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHVEL SKE+ AKIGS
Sbjct: 224 RLVGAHVELISKEEYAKIGS 238

[Close]

BLAST of CaUC04G078560 vs. NCBI nr
Match: XP_022998051.1 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 8.8e-14
Identity = 50/80 (62.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVNQD G  GNLLV+
Sbjct: 163 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNQDPGLTGNLLVE 222

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHVEL SKE+ AKIGS
Sbjct: 223 RLVGAHVELISKEEYAKIGS 237

[Close]

BLAST of CaUC04G078560 vs. NCBI nr
Match: KAG6607407.1 (putative D-cysteine desulfhydrase 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 8.8e-14
Identity = 50/80 (62.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVNQD G  GNLLV+
Sbjct: 164 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNQDPGLTGNLLVE 223

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHVEL SKE+ AKIGS
Sbjct: 224 RLVGAHVELISKEEYAKIGS 238

[Close]

BLAST of CaUC04G078560 vs. NCBI nr
Match: XP_023525902.1 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 8.8e-14
Identity = 50/80 (62.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVNQD G  GNLLV+
Sbjct: 164 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNQDPGLTGNLLVE 223

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHVEL SKE+ AKIGS
Sbjct: 224 RLVGAHVELISKEEYAKIGS 238

[Close]

BLAST of CaUC04G078560 vs. ExPASy Swiss-Prot
Match: Q6ZHE5 (Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0773300 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-14
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  +IT G IQSNHC AT V  KY NLD   +  T        LV++D G  GNLLV+
Sbjct: 133 QGADCVITVGGIQSNHCRATAVAAKYINLDCYLILRT-----SKLLVDKDPGLVGNLLVE 192

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAH++L SKE+  KIGS
Sbjct: 193 RLVGAHIDLVSKEEYGKIGS 207

[Close]

BLAST of CaUC04G078560 vs. ExPASy Swiss-Prot
Match: F4HYF3 (Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DCD PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-10
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           Q A  +IT G IQSNHC AT   + Y NL+   +  T        L ++D G  GNLLV+
Sbjct: 107 QHADTVITIGGIQSNHCRATATASNYLNLNSHLILRT-----SKLLADEDPGLVGNLLVE 166

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGA+V L SKE+ + IGS
Sbjct: 167 RLVGANVHLISKEEYSSIGS 181

[Close]

BLAST of CaUC04G078560 vs. ExPASy TrEMBL
Match: A0A6J1K967 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492816 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 50/80 (62.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVNQD G  GNLLV+
Sbjct: 163 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNQDPGLTGNLLVE 222

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHVEL SKE+ AKIGS
Sbjct: 223 RLVGAHVELISKEEYAKIGS 237

[Close]

BLAST of CaUC04G078560 vs. ExPASy TrEMBL
Match: A0A6J1GBY4 (bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452580 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 50/80 (62.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVNQD G  GNLLV+
Sbjct: 164 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNQDPGLTGNLLVE 223

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHVEL SKE+ AKIGS
Sbjct: 224 RLVGAHVELISKEEYAKIGS 238

[Close]

BLAST of CaUC04G078560 vs. ExPASy TrEMBL
Match: A0A6A4Q1T9 (Putative D-cysteine desulfhydrase OS=Lupinus albus OX=3870 GN=Lal_00026785 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-14
Identity = 49/80 (61.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T       ALV+QD G  GNLLV+
Sbjct: 87  QGADSIITIGGIQSNHCRATAVAAKYLNLDCYLILRT-----SKALVDQDPGLTGNLLVE 146

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGAHV+L SKE+ AKIGS
Sbjct: 147 RLVGAHVQLISKEEYAKIGS 161

[Close]

BLAST of CaUC04G078560 vs. ExPASy TrEMBL
Match: A0A5D3BJG3 (Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00460 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-14
Identity = 49/83 (59.04%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  KY NLD   +  T        LVN+D G  GNLLV+
Sbjct: 162 QGADCIITIGGIQSNHCRATAVAAKYFNLDTYLILRT-----SKVLVNEDPGLTGNLLVE 221

Query: 63  RLVGAHVELASKEDLAKIGSTVS 86
           RLVGAHVEL SKE+ AKIGS ++
Sbjct: 222 RLVGAHVELISKEEYAKIGSVLT 239

[Close]

BLAST of CaUC04G078560 vs. ExPASy TrEMBL
Match: W9QZC4 (Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Morus notabilis OX=981085 GN=L484_019346 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-14
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           QGA  IIT G IQSNHC AT V  +Y NLD   +  T        LV+QD G  GNLLV+
Sbjct: 89  QGADCIITIGGIQSNHCRATAVAARYLNLDCYLILRT-----SKVLVDQDPGLTGNLLVE 148

Query: 63  RLVGAHVELASKEDLAKIGSTVSVQNH 90
           RLVGAHVEL SKE+ AKIGS V++ NH
Sbjct: 149 RLVGAHVELISKEEYAKIGS-VALTNH 169

[Close]

BLAST of CaUC04G078560 vs. TAIR 10
Match: AT1G48420.1 (D-cysteine desulfhydrase )

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 3   QGAYGIITKGFIQSNHCCATVVTTKYSNLDFGTVWETVAECVCNALVNQDLGFNGNLLVQ 62
           Q A  +IT G IQSNHC AT   + Y NL+   +  T        L ++D G  GNLLV+
Sbjct: 107 QHADTVITIGGIQSNHCRATATASNYLNLNSHLILRT-----SKLLADEDPGLVGNLLVE 166

Query: 63  RLVGAHVELASKEDLAKIGS 83
           RLVGA+V L SKE+ + IGS
Sbjct: 167 RLVGANVHLISKEEYSSIGS 181

The following BLAST results are available for this feature:

BLAST of CaUC04G078560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949139.1	8.8e-14	62.50	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]
XP_023522011.1	8.8e-14	62.50	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]
XP_022998051.1	8.8e-14	62.50	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]
KAG6607407.1	8.8e-14	62.50	putative D-cysteine desulfhydrase 1, mitochondrial, partial [Cucurbita argyrospe...	[more]
XP_023525902.1	8.8e-14	62.50	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]

BLAST of CaUC04G078560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ZHE5	2.4e-14	55.00	Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japoni...	[more]
F4HYF3	3.6e-10	47.50	Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]

BLAST of CaUC04G078560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K967	4.3e-14	62.50	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]
A0A6J1GBY4	4.3e-14	62.50	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]
A0A6A4Q1T9	5.6e-14	61.25	Putative D-cysteine desulfhydrase OS=Lupinus albus OX=3870 GN=Lal_00026785 PE=3 ...	[more]
A0A5D3BJG3	5.6e-14	59.04	Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminas...	[more]
W9QZC4	5.6e-14	58.62	Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Morus notabilis OX=98108...	[more]

BLAST of CaUC04G078560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48420.1	2.6e-11	47.50	D-cysteine desulfhydrase	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	GENE3D	3.40.50.1100		coord: 7..89 e-value: 1.1E-9 score: 40.4
IPR027278	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	PANTHER	PTHR43780	1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED	coord: 3..83
None	No IPR available	PANTHER	PTHR43780:SF8	SUBFAMILY NOT NAMED	coord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G078560.1	CaUC04G078560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process