CaUC04G076870 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G076870
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibosomal protein S24/S35, mitochondrial
LocationCiama_Chr04: 26168686 .. 26170569 (+)
RNA-Seq ExpressionCaUC04G076870
SyntenyCaUC04G076870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTACTGTAAAGAAACGCCATGAAACGAGCTATTTGGGGAGCTGTCTTCAATGTTTGTTCTCGAACACTTTCAGTCTCTCCTCTGCTACGAGCCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGTACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGGTAAAATAATATTAATTTCGTTTCTCAATTTTCGATTGGACATTTTGGAATTGTTTCGGGCAATCGTGGGTTGTTGGTGGGCATCATTTGAATAACAAAGTCTCGATTCCGACCCTTAGTCATAATCCTGCAAGGAAATATAGGCACTATGAATTATACTCTCGCTGATATTAAGATATATACTTTCTTCAGTTTAATTGTTTGAGTTCTTGAGTTGGTATTAGTTTTACACAATAGTTGACCATAAAATCTTGGATTATATCCTCTCCTCATGTATAGGTTGTTTAATACCGGAAATTTTAGAAAAGACGTCTTCAGAAGCGCTGTTAAAGAAAATACTTCTATCAAAAAACTTCTATTATAAGGAAATTTATAACAAGTGTAATGAAAGTTCATTTTGTTTGTTGGTTCTAGTGAAAGTGCTTTTAATCAAATTAGATGTGAAAAATAATTAAGATTACAAAGCAATTAAGTGAGAACATTAGGGATCAGCAAGAGAAAGCAAAAGTGCTCAGAAAAATAGAGGGAAGTTTGGAGGATAAAGTGGGTAGAAAGAGTTTAGTGTGTGATAAGAAGTCTGGGAGAGAGAGTTTGTGTACAGAGAAATTAAGCAAAAGGTGTTCATAGAGAAATGTTAGTAGAAGAAAGTTTGTATTTTGAGAAATTAAGGAGAATGAATTTTAGTGAAAGATACTTGATAGATCATCTACCATTCACTTGTTCGAAAAATACGTATCAGTGTTCTTAGTTTTATCGAAATTAACCATTTAAAAAGTACTTCTATCATGATTAGGGGCACCTCTATTTACCTAAAAGATGTGTAAAGTTCTTGTTATTTCTGGATCAATTTTTGATAGTATGACTAATTTTTATTTTTGAACGCGAAGAAAGCAACAAATACTGTCAGCTTCTTCATTTGGTGTTCCTGGGTTTCTGGATTTATACACTTTCGATTTAGGAGCTGATACAGTAATTTTTTTGTGATTACAGAGCTGAAGAGTAAGATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGAAGATGATGATGAACTGATGAAAGAAATTCGAAAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATGTGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAAGTTATGTTGATAACGTGAGTTCGATAGAGTCCATACTTGTTTGATGTTAGATCTTACATTTTTGGGTGAAAAATTTCAACTTCTAACATCTTATTTAGTTTGAAAATCTTTTGATTCATTTTAACTCAGAGGAACATATCAGATGATCATGGTTTGATCTATGGGCACTTGAACCCCAGCTTGAGGAACTTTGTTGAATGGAATATTGTATGCTATACGTCTTTTAAATGCTAATATTTGGATTTATGACATTAGCATGGCCACAGCCAGAGATTTGGAGGTGCAAATTCCTACCTTATATTTGTTGTATGTATTATGGTTTATTTGTAATCACTATTAAATATTTGTTCACTAATAGAATTATTATTCTTAAAACCCAAGGTGAATGGACTGGG

mRNA sequence

AGTACTGTAAAGAAACGCCATGAAACGAGCTATTTGGGGAGCTGTCTTCAATGTTTGTTCTCGAACACTTTCAGTCTCTCCTCTGCTACGAGCCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGTACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGAGCTGAAGAGTAAGATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGAAGATGATGATGAACTGATGAAAGAAATTCGAAAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATGTGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAAGTTATGTTGATAACGTGAGTTCGATAGAGTCCATACTTGTTTGATGTTAGATCTTACATTTTTGGGTGAAAAATTTCAACTTCTAACATCTTATTTAGTTTGAAAATCTTTTGATTCATTTTAACTCAGAGGAACATATCAGATGATCATGGTTTGATCTATGGGCACTTGAACCCCAGCTTGAGGAACTTTGTTGAATGGAATATTGTATGCTATACGTCTTTTAAATGCTAATATTTGGATTTATGACATTAGCATGGCCACAGCCAGAGATTTGGAGGTGCAAATTCCTACCTTATATTTGTTGTATGTATTATGGTTTATTTGTAATCACTATTAAATATTTGTTCACTAATAGAATTATTATTCTTAAAACCCAAGGTGAATGGACTGGG

Coding sequence (CDS)

ATGAAACGAGCTATTTGGGGAGCTGTCTTCAATGTTTGTTCTCGAACACTTTCAGTCTCTCCTCTGCTACGAGCCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGTACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGAGCTGAAGAGTAAGATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGAAGATGATGATGAACTGATGAAAGAAATTCGAAAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATGTGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAA

Protein sequence

MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI
Homology
[Close]
BLAST of CaUC04G076870 vs. NCBI nr
Match: XP_023519890.1 (uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 124/163 (76.07%), Postives = 137/163 (84.05%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTL---RCYSSGNDKYNGLYSTT 60
           MKRAIWGAVF VCSR +S+SPLL+  RSGPLL  FSV      RCYS+GNDKYNGL STT
Sbjct: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIR 120
            ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH + DDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 KRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +RMPG+VEDFKDEE  SDLS ELNETDEE E+    EEEDRR+
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPS-EEEDRRV 162

[Close]
BLAST of CaUC04G076870 vs. NCBI nr
Match: XP_038894045.1 (uncharacterized protein LOC120082798 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 4.5e-53
Identity = 126/162 (77.78%), Postives = 137/162 (84.57%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNEN 60
           MKRA+ GAVFNV SRTLSVSP LR FRSG LLS FS  +LR YSSGNDKYNGL ST  +N
Sbjct: 1   MKRALLGAVFNVYSRTLSVSPPLRTFRSGLLLSPFSFFSLRYYSSGNDKYNGLNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRM 120
           KDSL+EDDVSTEELK KI+KFYEGDV+SLPTIFEAILKRKLSGKHE+DD E+MKEIR+RM
Sbjct: 61  KDSLIEDDVSTEELKRKIDKFYEGDVESLPTIFEAILKRKLSGKHEDDDHEMMKEIRQRM 120

Query: 121 PGQVEDFKDEECGSDLSELNETDEETE---DSSDYEEEDRRI 160
           PGQVED   EE  SDLSELNET EE E   DSSD E+EDRR+
Sbjct: 121 PGQVEDSTGEEYDSDLSELNETAEEMEDFSDSSDSEDEDRRV 160

[Close]
BLAST of CaUC04G076870 vs. NCBI nr
Match: XP_022924024.1 (uncharacterized protein LOC111431572 [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 9.9e-53
Identity = 122/163 (74.85%), Postives = 137/163 (84.05%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTT 60
           MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIR 120
            ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH + DDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 KRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +R+PG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSS-EEEDRRV 162

[Close]
BLAST of CaUC04G076870 vs. NCBI nr
Match: KAG7019929.1 (hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 120/163 (73.62%), Postives = 136/163 (83.44%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTT 60
           MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIR 120
            ENKDSLV+DD+S EELK KI++FYEGD++SLP IFEAILKRKLSGKH + DDELMKEIR
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDIESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 KRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +RMPG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSS-EEEDRRV 162

[Close]
BLAST of CaUC04G076870 vs. NCBI nr
Match: KAG6584340.1 (hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.2 bits (544), Expect = 8.4e-52
Identity = 120/163 (73.62%), Postives = 136/163 (83.44%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTT 60
           MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL ST+
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTS 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIR 120
            ENKDSLV+DD+S EELK KI++FYEGDV+SLP IFEAILKRKLSGKH + DDELMKEIR
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDVESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 KRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +RMPG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSS-EEEDRRV 162

[Close]
BLAST of CaUC04G076870 vs. ExPASy TrEMBL
Match: A0A6J1E804 (uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC111431572 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.8e-53
Identity = 122/163 (74.85%), Postives = 137/163 (84.05%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTT 60
           MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIR 120
            ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH + DDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 KRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +R+PG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSS-EEEDRRV 162

[Close]
BLAST of CaUC04G076870 vs. ExPASy TrEMBL
Match: A0A5D3BIA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002170 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.9e-51
Identity = 119/160 (74.38%), Postives = 133/160 (83.12%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNEN 60
           MKRA+WGAVFNVCSRTLSVSP LR FRS PLLS FSV TLRCYSSGNDKYN L ST  +N
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKR 120
           KDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKRKLSGKHE+ DDELMKEIR+R
Sbjct: 61  KDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEIRQR 120

Query: 121 MPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI 160
           MPG++EDFK EE  S+L++        + +SD EEED+RI
Sbjct: 121 MPGEIEDFKGEEYDSELTD--------DAASDSEEEDKRI 150

[Close]
BLAST of CaUC04G076870 vs. ExPASy TrEMBL
Match: A0A1S3CEX3 (uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.9e-51
Identity = 119/160 (74.38%), Postives = 133/160 (83.12%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNEN 60
           MKRA+WGAVFNVCSRTLSVSP LR FRS PLLS FSV TLRCYSSGNDKYN L ST  +N
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKR 120
           KDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKRKLSGKHE+ DDELMKEIR+R
Sbjct: 61  KDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEIRQR 120

Query: 121 MPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI 160
           MPG++EDFK EE  S+L++        + +SD EEED+RI
Sbjct: 121 MPGEIEDFKGEEYDSELTD--------DAASDSEEEDKRI 150

[Close]
BLAST of CaUC04G076870 vs. ExPASy TrEMBL
Match: A0A6J1KP40 (uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.9e-50
Identity = 120/161 (74.53%), Postives = 132/161 (81.99%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTT 60
           MKRAIWGAVF  CSR +S+ PLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIR 120
            ENKDSLV+D VS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH + DDELMKEI 
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 KRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDR 158
           +RMPG+VEDFKDEE  SDLS +LNETDEE E+ S  EEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSS-EEEDR 160

[Close]
BLAST of CaUC04G076870 vs. ExPASy TrEMBL
Match: A0A6J1C5J6 (uncharacterized protein LOC111008596 OS=Momordica charantia OX=3673 GN=LOC111008596 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.0e-47
Identity = 113/166 (68.07%), Postives = 132/166 (79.52%), Query Frame = 0 

Query: 1   MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTL---RCYSSGNDKYNGLYSTT 60
           M RA+W AVFNV +R++S+SP L+   SG   +RF+VL     RCYSS NDKYNGL STT
Sbjct: 1   MNRALWRAVFNVYARSVSISPPLQTPCSGHFPARFAVLASLQPRCYSSKNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIR 120
           N+N  S+V+DDVSTEELK KI+KFYEGDV+SLP+IFEAILKRKLSGKHE  DDELMKEIR
Sbjct: 61  NQNDHSVVDDDVSTEELKRKIDKFYEGDVESLPSIFEAILKRKLSGKHEGADDELMKEIR 120

Query: 121 KRMPGQVEDFKDEECGSDLSELNETDEETE------DSSDYEEEDR 158
           +RMPGQ+EDFKD+EC SDL+   ETDEE +      DSSD EEEDR
Sbjct: 121 QRMPGQMEDFKDDECASDLNGFEETDEEIDDFSHARDSSDSEEEDR 166

[Close]
BLAST of CaUC04G076870 vs. TAIR 10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 0 

Query: 56  TTNENKDSLVEDDVSTEELKSKINK-FYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMK 115
           T + +K  LV +DVS +ELKS+I+K F EG+ D+LP + EA+L+R+L  KH E DDELM+
Sbjct: 60  TDSSDKKDLVVEDVSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDELME 119

Query: 116 EIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSDYEEEDRR 159
           +I + +P + +D KDE+  SD  E + TDEE ED   S +Y  E  R
Sbjct: 120 KI-ESLPFK-DDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMR 164

[Close]
BLAST of CaUC04G076870 vs. TAIR 10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-12
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 56  TTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMK 115
           T +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA+L+R+L  KH E DDEL++
Sbjct: 64  TDSPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLE 123

Query: 116 EIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSDYEEEDRR 159
           +I + +P + +D KDE+  SD  E + TDEE ED   S +Y  E  R
Sbjct: 124 KI-ESLPFK-DDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMR 168

[Close]
BLAST of CaUC04G076870 vs. TAIR 10
Match: AT3G18240.2 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-12
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 56  TTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMK 115
           T +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA+L+R+L  KH E DDEL++
Sbjct: 64  TDSPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLE 123

Query: 116 EIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSDYEEEDRR 159
           +I + +P + +D KDE+  SD  E + TDEE ED   S +Y  E  R
Sbjct: 124 KI-ESLPFK-DDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMR 168

[Close]
BLAST of CaUC04G076870 vs. TAIR 10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast hits to 569 proteins in 87 species: Archae - 0; Bacteria - 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 35/106 (33.02%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 55  STTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELM 114
           S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH++ DDE+M
Sbjct: 50  SESDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVM 109

Query: 115 KEIRK---RMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEED 157
             +RK       +V+D   +       + +++D E++D  D +  D
Sbjct: 110 DVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSDIESDDLRDGDSSD 155

[Close]
BLAST of CaUC04G076870 vs. TAIR 10
Match: AT1G73770.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 35/106 (33.02%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 55  STTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELM 114
           S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH++ DDE+M
Sbjct: 50  SESDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVM 109

Query: 115 KEIRK---RMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEED 157
             +RK       +V+D   +       + +++D E++D  D +  D
Sbjct: 110 DVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSDIESDDLRDGDSSD 155

The following BLAST results are available for this feature:
BLAST of CaUC04G076870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023519890.11.2e-5376.07uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo][more]
XP_038894045.14.5e-5377.78uncharacterized protein LOC120082798 [Benincasa hispida][more]
XP_022924024.19.9e-5374.85uncharacterized protein LOC111431572 [Cucurbita moschata][more]
KAG7019929.13.8e-5273.62hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584340.18.4e-5273.62hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CaUC04G076870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC04G076870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E8044.8e-5374.85uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC1114315... [more]
A0A5D3BIA45.9e-5174.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEX35.9e-5174.38uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=... [more]
A0A6J1KP402.9e-5074.53uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236... [more]
A0A6J1C5J61.0e-4768.07uncharacterized protein LOC111008596 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
BLAST of CaUC04G076870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G21460.12.4e-1247.66Ribosomal protein S24/S35, mitochondrial [more]
AT3G18240.17.0e-1245.79Ribosomal protein S24/S35, mitochondrial [more]
AT3G18240.27.0e-1245.79Ribosomal protein S24/S35, mitochondrial [more]
AT1G73770.13.3e-0633.02FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G73770.23.3e-0633.02FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G076870.1CaUC04G076870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion