CaUC04G075420 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G075420
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RNase H domain-containing protein
Location	Ciama_Chr04: 24567498 .. 24568301 (-)
RNA-Seq Expression	CaUC04G075420
Synteny	CaUC04G075420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTATGTGTTGTAATTAATAAAATGCATTACAATTTTCACTAGTCATAAACGAACAAGTTATCAAACTCAAACGAGTTTTGTGACAGTAAAGATTGAAATTTTTAAAAAATGACGATAGGCACATCAAGGACAAAATGTGATGGCATAATCAGCTCCACCGGTGCAAGTAAAAGTACTTGTCTTATCATCATAAGCGTAGCTATAAGCTTGCGGACACTGATTCTTGAAAATCATTGAATAATTGGTTGGCGGGCAAGTTTCCGGCTGATTATGGTCGCCACTGCAGCAATATTCAGGCTGATTAAAGGCCATACAAGCACTTTTACAAGCGATCACTGCGCCACCTTCATCTGTAATGGCTAATTCCAGTGGACAAACAGCATTTACATTTCCTGTACAAAGTACCGTTTGGCACGCCCCACCCGAACCGCCAATCGGCGCCACTGAAACAGGTAAATTGAAGCCATCGACAAGGCTGATGTCGAAGAAATCTTGGCCGCCGCTTGACGCAATTGTGAATTCCACTAGGCTTGCTGGCGGAATTCCGCCGGCGCCGTTACATGTGACTTGGCCACTACCACAATCGGCGGTTGCGCAAGAGAACTTTCCACTTGCATCAGTGGAACAGAGTGTTCTTGCCCAAAATCTGCCGGACCACGGCGGAGAAGTCGTTACCGTTGTTGTTGATCCGGGGAGTAATTCGAAGCCAGTGGTTGATAGTTGGTTGCCGGCACCGGTTAAAGCTCCCGGCCAAATTGGGAACGGACAATTGTTTTTAATGGCGAAATTAATTGAGTAA

mRNA sequence

ATGGGCACATCAAGGACAAAATGTGATGGCATAATCAGCTCCACCGGTGCAAGTAAAAGTACTTGTCTTATCATCATAAGCGCCATACAAGCACTTTTACAAGCGATCACTGCGCCACCTTCATCTGTAATGGCTAATTCCAGTGGACAAACAGCATTTACATTTCCTGTACAAAGTACCGTTTGGCACGCCCCACCCGAACCGCCAATCGGCGCCACTGAAACAGGTAAATTGAAGCCATCGACAAGGCTGATGTCGAAGAAATCTTGGCCGCCGCTTGACGCAATTGTGAATTCCACTAGGCTTGCTGGCGGAATTCCGCCGGCGCCGTTACATGTGACTTGGCCACTACCACAATCGGCGGTTGCGCAAGAGAACTTTCCACTTGCATCAGTGGAACAGAGTGTTCTTGCCCAAAATCTGCCGGACCACGGCGGAGAAGTCGTTACCGTTGTTGTTGATCCGGGGAGTAATTCGAAGCCAGTGGTTGATAGTTGGTTGCCGGCACCGGTTAAAGCTCCCGGCCAAATTGGGAACGGACAATTGTTTTTAATGGCGAAATTAATTGAGTAA

Coding sequence (CDS)

ATGGGCACATCAAGGACAAAATGTGATGGCATAATCAGCTCCACCGGTGCAAGTAAAAGTACTTGTCTTATCATCATAAGCGCCATACAAGCACTTTTACAAGCGATCACTGCGCCACCTTCATCTGTAATGGCTAATTCCAGTGGACAAACAGCATTTACATTTCCTGTACAAAGTACCGTTTGGCACGCCCCACCCGAACCGCCAATCGGCGCCACTGAAACAGGTAAATTGAAGCCATCGACAAGGCTGATGTCGAAGAAATCTTGGCCGCCGCTTGACGCAATTGTGAATTCCACTAGGCTTGCTGGCGGAATTCCGCCGGCGCCGTTACATGTGACTTGGCCACTACCACAATCGGCGGTTGCGCAAGAGAACTTTCCACTTGCATCAGTGGAACAGAGTGTTCTTGCCCAAAATCTGCCGGACCACGGCGGAGAAGTCGTTACCGTTGTTGTTGATCCGGGGAGTAATTCGAAGCCAGTGGTTGATAGTTGGTTGCCGGCACCGGTTAAAGCTCCCGGCCAAATTGGGAACGGACAATTGTTTTTAATGGCGAAATTAATTGAGTAA

Protein sequence

MGTSRTKCDGIISSTGASKSTCLIIISAIQALLQAITAPPSSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPSTRLMSKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFPLASVEQSVLAQNLPDHGGEVVTVVVDPGSNSKPVVDSWLPAPVKAPGQIGNGQLFLMAKLIE

Homology

[Close]

BLAST of CaUC04G075420 vs. NCBI nr
Match: KAF9867878.1 (hypothetical protein H0E87_026561 [Populus deltoides])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-21
Identity = 80/166 (48.19%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 26  ISAIQALLQAITAPPSSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPSTRLM 85
           ++A  ALLQAIT P   + A    QTAFT   Q  V   P E P G T+ G LKPSTRL+
Sbjct: 16  LNAKLALLQAITIPSGLLTAKLGSQTAFTSGAQ-LVERQPVERPCGVTKIGMLKPSTRLI 75

Query: 86  SKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFPLASVEQSVLAQNLPDHG 145
           S          VNS   AGGI PAPLH   P  QSAVAQ NFP  SVE  VLA   PDH 
Sbjct: 76  S----------VNSAMDAGGIAPAPLHSMTPEAQSAVAQTNFPEESVEHCVLAHKRPDHV 135

Query: 146 GEVVTVVVDPGSNSKPVVD-SWLPAPVKAPGQIGNGQLFLMAKLIE 191
              ++    P +N KPV D    PA V+ PGQ   GQLFL  K+ +
Sbjct: 136 AGTLSEDEAPVANVKPVEDIVGRPAAVRVPGQTVYGQLFLTKKVTD 170

[Close]

BLAST of CaUC04G075420 vs. NCBI nr
Match: KAB5520191.1 (hypothetical protein DKX38_024510 [Salix brachista])

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-18
Identity = 71/165 (43.03%), Postives = 86/165 (52.12%), Query Frame = 0


Query: 27  SAIQALLQAITAPPSSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPSTRLMS 86
           +A  ALLQAIT P + + A  + QTAFT   Q  +    PEPP G  E G+         
Sbjct: 32  NAKHALLQAITVPSAPLTAKLASQTAFTLAAQ--LVELQPEPPCGVIEIGR--------- 91

Query: 87  KKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFPLASVEQSVLAQNLPDHGG 146
                     VNS + AGGI PAPLH   P  QSAVAQ NFP ASVE  VLAQ  P H  
Sbjct: 92  ----------VNSAKEAGGIAPAPLHSMTPEAQSAVAQTNFPDASVEHCVLAQKRPAHVA 151

Query: 147 EVVTVVVDPGSNSKPVVD-SWLPAPVKAPGQIGNGQLFLMAKLIE 191
             ++    P +N KPV D +  PA V+ PGQ   G LF+  K+ +
Sbjct: 152 GALSEDEAPAANVKPVEDNAGPPAFVRVPGQTVYGHLFVKEKVTD 175

[Close]

BLAST of CaUC04G075420 vs. NCBI nr
Match: OAY83427.1 (hypothetical protein ACMD2_25315 [Ananas comosus])

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-16
Identity = 71/162 (43.83%), Postives = 81/162 (50.00%), Query Frame = 0


Query: 27  SAIQALLQAITAPP----SSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPST 86
           +A  ALLQA  APP     S    S GQT F           P  PP G T  GK     
Sbjct: 89  NASHALLQATAAPPPLAAESTTFKSDGQTPFRSTRHPVAVQLPAVPPCGTTSIGK----- 148

Query: 87  RLMSKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFP-LASVEQSVLAQNL 146
            L  + S PPL + VNS R+AGG  P P   T P PQS VAQEN P +AS EQSV  QN 
Sbjct: 149 -LYLQASIPPLPSSVNSARVAGGAAPVPEQATVPDPQSPVAQENTPVVASAEQSVRPQNR 208

Query: 147 PDHGGEVVTVVVDPGSNSKPVVDSW-LPAPVKAPGQIGNGQL 183
           PDH       +  P +++ PVVDS  +PAP   PG     QL
Sbjct: 209 PDHPDGTSIELDCPLASANPVVDSGAVPAPDSMPGHTVYPQL 244

[Close]

BLAST of CaUC04G075420 vs. NCBI nr
Match: KAB8091045.1 (hypothetical protein EE612_016443 [Oryza sativa] >BAS83223.1 Os03g0244333 [Oryza sativa Japonica Group])

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-15
Identity = 57/113 (50.44%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 64  APPEPPIGATETGKLKPSTRLMSKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVA 123
           A   PP G    G+L PSTRL SKKS PP  + VNS  +AGG  P PLH   P PQS VA
Sbjct: 14  AAAPPPCGTMIMGRLYPSTRLTSKKSMPPEPSSVNSMSVAGGAAPPPLHWMPPEPQSPVA 73

Query: 124 QENFPLASVEQSVLAQNLPDHGGEVVTVVVDPGSNSKPVVDSW-LPAPVKAPG 176
           Q N P+AS  QSV A   PD      TV   P +++ PVVDS  +PAP  +PG
Sbjct: 74  QVNLPVASSAQSVRAHMRPDQLAGASTVADAPCASANPVVDSGAVPAPDSSPG 126

[Close]

BLAST of CaUC04G075420 vs. NCBI nr
Match: KAB5520105.1 (hypothetical protein DKX38_024424 [Salix brachista])

HSP 1 Score: 88.2 bits (217), Expect = 8.3e-14
Identity = 61/138 (44.20%), Postives = 71/138 (51.45%), Query Frame = 0


Query: 27  SAIQALLQAITAPPSSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPSTRLMS 86
           +A  ALLQAIT P + + A  + QTAFT   Q  +    PEPP G  E G+         
Sbjct: 36  NAKHALLQAITVPSAPLTAKLASQTAFTLAAQ--LVELQPEPPCGVIEIGR--------- 95

Query: 87  KKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFPLASVEQSVLAQNLPDHGG 146
                     VNS + AGGI PAPLH   P  QSAVAQ NFP ASVE  VLAQ  P H  
Sbjct: 96  ----------VNSAKEAGGIAPAPLHSMTPEAQSAVAQTNFPDASVEHCVLAQKRPAHVA 152

Query: 147 EVVTVVVDPGSNSKPVVD 165
             ++    P +N KPV D
Sbjct: 156 GALSEDEAPAANVKPVED 152

[Close]

BLAST of CaUC04G075420 vs. ExPASy TrEMBL
Match: A0A6N2MKD6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS383472 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-19
Identity = 74/163 (45.40%), Postives = 85/163 (52.15%), Query Frame = 0


Query: 26  ISAIQALLQAITAPPSSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPSTRLM 85
           ++A  ALLQAIT P + V AN   QTAFT   Q  +    PEPP G  E G+        
Sbjct: 8   LNAKHALLQAITVPSAPVTANFGSQTAFTLAAQ--LVDGQPEPPCGVIEIGR-------- 67

Query: 86  SKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFPLASVEQSVLAQNLPDHG 145
                      VNS + AGGI PAPLH   P  QSAVAQ NFP ASVE  VLAQ  P H 
Sbjct: 68  -----------VNSAKEAGGIAPAPLHSMTPEAQSAVAQTNFPDASVEHCVLAQKRPAHV 127

Query: 146 GEVVTVVVDPGSNSKPVVD-SWLPAPVKAPGQIGNGQLFLMAK 188
              +     P +N KPV D + LP  V+APGQ   G LF+  K
Sbjct: 128 AGALREDEAPAANVKPVEDNAGLPGFVRAPGQTVYGHLFVKEK 149

[Close]

BLAST of CaUC04G075420 vs. ExPASy TrEMBL
Match: A0A5N5JLH5 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024510 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 71/165 (43.03%), Postives = 86/165 (52.12%), Query Frame = 0


Query: 27  SAIQALLQAITAPPSSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPSTRLMS 86
           +A  ALLQAIT P + + A  + QTAFT   Q  +    PEPP G  E G+         
Sbjct: 32  NAKHALLQAITVPSAPLTAKLASQTAFTLAAQ--LVELQPEPPCGVIEIGR--------- 91

Query: 87  KKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFPLASVEQSVLAQNLPDHGG 146
                     VNS + AGGI PAPLH   P  QSAVAQ NFP ASVE  VLAQ  P H  
Sbjct: 92  ----------VNSAKEAGGIAPAPLHSMTPEAQSAVAQTNFPDASVEHCVLAQKRPAHVA 151

Query: 147 EVVTVVVDPGSNSKPVVD-SWLPAPVKAPGQIGNGQLFLMAKLIE 191
             ++    P +N KPV D +  PA V+ PGQ   G LF+  K+ +
Sbjct: 152 GALSEDEAPAANVKPVEDNAGPPAFVRVPGQTVYGHLFVKEKVTD 175

[Close]

BLAST of CaUC04G075420 vs. ExPASy TrEMBL
Match: A0A199W1T3 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_25315 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 71/162 (43.83%), Postives = 81/162 (50.00%), Query Frame = 0


Query: 27  SAIQALLQAITAPP----SSVMANSSGQTAFTFPVQSTVWHAPPEPPIGATETGKLKPST 86
           +A  ALLQA  APP     S    S GQT F           P  PP G T  GK     
Sbjct: 89  NASHALLQATAAPPPLAAESTTFKSDGQTPFRSTRHPVAVQLPAVPPCGTTSIGK----- 148

Query: 87  RLMSKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFP-LASVEQSVLAQNL 146
            L  + S PPL + VNS R+AGG  P P   T P PQS VAQEN P +AS EQSV  QN 
Sbjct: 149 -LYLQASIPPLPSSVNSARVAGGAAPVPEQATVPDPQSPVAQENTPVVASAEQSVRPQNR 208

Query: 147 PDHGGEVVTVVVDPGSNSKPVVDSW-LPAPVKAPGQIGNGQL 183
           PDH       +  P +++ PVVDS  +PAP   PG     QL
Sbjct: 209 PDHPDGTSIELDCPLASANPVVDSGAVPAPDSMPGHTVYPQL 244

[Close]

BLAST of CaUC04G075420 vs. ExPASy TrEMBL
Match: A0A0P0VVF4 (Os03g0244333 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0244333 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 57/113 (50.44%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 64  APPEPPIGATETGKLKPSTRLMSKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVA 123
           A   PP G    G+L PSTRL SKKS PP  + VNS  +AGG  P PLH   P PQS VA
Sbjct: 14  AAAPPPCGTMIMGRLYPSTRLTSKKSMPPEPSSVNSMSVAGGAAPPPLHWMPPEPQSPVA 73

Query: 124 QENFPLASVEQSVLAQNLPDHGGEVVTVVVDPGSNSKPVVDSW-LPAPVKAPG 176
           Q N P+AS  QSV A   PD      TV   P +++ PVVDS  +PAP  +PG
Sbjct: 74  QVNLPVASSAQSVRAHMRPDQLAGASTVADAPCASANPVVDSGAVPAPDSSPG 126

[Close]

BLAST of CaUC04G075420 vs. ExPASy TrEMBL
Match: A0A0A9LR02 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 56/102 (54.90%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 76  GKLKPSTRLMSKKSWPPLDAIVNSTRLAGGIPPAPLHVTWPLPQSAVAQENFPL-ASVEQ 135
           G+L PSTRL SKKS PP  + VNS  +AGG  PAPLH T P PQS VAQ + P+ ASV Q
Sbjct: 4   GRLYPSTRLTSKKSMPPDPSSVNSASVAGGAAPAPLHWTLPEPQSPVAQVSLPVAASVAQ 63

Query: 136 SVLAQNLPDHGGEVVTVVVDPGSNSKPVVDSW-LPAPVKAPG 176
           SV A   PDH     TV   P +++ PVVDS  +PAP  +PG
Sbjct: 64  SVRAHIRPDHLAGASTVADAPCASANPVVDSGSVPAPDSSPG 105

The following BLAST results are available for this feature:

BLAST of CaUC04G075420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9867878.1	1.4e-21	48.19	hypothetical protein H0E87_026561 [Populus deltoides]	[more]
KAB5520191.1	9.5e-18	43.03	hypothetical protein DKX38_024510 [Salix brachista]	[more]
OAY83427.1	6.8e-16	43.83	hypothetical protein ACMD2_25315 [Ananas comosus]	[more]
KAB8091045.1	3.4e-15	50.44	hypothetical protein EE612_016443 [Oryza sativa] >BAS83223.1 Os03g0244333 [Oryza...	[more]
KAB5520105.1	8.3e-14	44.20	hypothetical protein DKX38_024424 [Salix brachista]	[more]

BLAST of CaUC04G075420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G075420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2MKD6	2.4e-19	45.40	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS383472 PE=4 SV=...	[more]
A0A5N5JLH5	4.6e-18	43.03	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024510 PE=4 SV=1	[more]
A0A199W1T3	3.3e-16	43.83	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_25315 PE=4 SV=1	[more]
A0A0P0VVF4	1.6e-15	50.44	Os03g0244333 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0244333 PE...	[more]
A0A0A9LR02	3.6e-15	54.90	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CaUC04G075420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 184..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G075420.1	CaUC04G075420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0003824	catalytic activity