CaUC04G071940 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G071940
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	F-box protein SKIP24 isoform X2
Location	Ciama_Chr04: 20340521 .. 20342229 (+)
RNA-Seq Expression	CaUC04G071940
Synteny	CaUC04G071940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATTGCTCCGATGAACTCTCCAAGTCTGGGTTCTAGGGTTTTTTGAGACTGTTCCTTTCCATCTTCCTAAATCTGAAAATGGCTGAATTGCCAGATGAGCTGTGGAGGCAAATTCTCGAAATTGGTGTAAAGAGCTGTGGTTTGACTTACAAAGATCTCTGTTGCGTCTCCATTTCTTCTCGTCGACTTCGCCGCCTCTCCGACGACGACTGTCCGTGGTCTCATCTTCTCTCCTCCGATTACCCTTCATCGTCTTCTTCTTTTCCATCCTCCGCCTCCTCCTCAAAGTCCCTTTACAAAATCAGGTAGAAGGAATAATTCATCAACTGCACCATATCTCTGAATCTCTCTCTTCCAATGGCGTTTGCTTGGTTAATCTGATTACGCTGGAACAAATTGGTGAGTTCGTGTTTCTTTACTTCTTCATGACGATGATCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTAGGTTGGAGAGAGATAGAAATAGGAAGGAAGCGGCGCATAGGAGAGCAGTGCTTAGAAAGGAAAGCCAAATAGCTGAGCACTATAGAAGGCTTGGTGAATTAGAGGAACGGTTGATGGAGGAGACTAACAAATTGACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGGTAGTATTCGGCAATTAATTCAATATTTCAGTAATATTTTCTGTTCCTTTCCTCGTTTGATGTTTCAGGAAGATTTTCTGTGTGCTTGTGCAACTTAGTTGCTTGCAATCAGTAAAGTCGTTGATTGGAATTGTGCTTTAGAAGTATTCTAGGCAGTGGGTAAAAGGAGGAAACTATAATAACTGATTATTGTCATTGTATAAAAATTCACTAGGATCATCTTACTAGATTTTTATGTTCAACAGCATGTGGGGCTGAGGAATTCAAATCTTTTAATGTCTTGGGTCGATGGTATATTGCCTAAACTAGTTCGAACTATACTTAGGTTGGCAAGATCATCTTACTAGATGGCGTGGTACTTCAATTATCTGTTGATATCAAAGCCCAATGGATTCATTTGTCTAACGTGTGTCTAGTCTTGGTAAATTTTTGAACATTTTAACCCCTTCACGTGTAATGCTAAAATGTCAAGTCTGGTTAGGAGTCAAATTTTTTAGACCTGATAATTGTGTTTGTTCGTCTCAGGGAAGCAACAGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAAAAGCAAATTGTTGAACAATGCAGTGTATCCGTTGATTCTCGGTATCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCGGAAAGCACTTGTAAGTTTTGAATGTGAAAACATTAATTTTCCATCTGATATGAACTGTAATTTTAATTTCTAATACTGCTTGCAACAGAAAGATGAAAAACAGAGACTGGAATTAGCTAAAGAAGAGTTAACTTCATTGAAGTACCACCCTCTAAAGGATCATAAATTTATAGATAGCAGTAATAATGAATCTTGCATCAAGAGGAGGTCAAAGAATGTTATAAACGTAAGGTCCTTTCTTGTTGATCATACTTCAAATTTTCTGATTGCGAGTTTAAATATTTTTGTCATGTTCATGATGGTTTGGTTACCAAGAAATCTAACTGCTCCCCGTGAATTCCTGAATTCTAATGTGTGCACTGTGCTCCATTAA

mRNA sequence

GAGATTGCTCCGATGAACTCTCCAAGTCTGGGTTCTAGGGTTTTTTGAGACTGTTCCTTTCCATCTTCCTAAATCTGAAAATGGCTGAATTGCCAGATGAGCTGTGGAGGCAAATTCTCGAAATTGGTGTAAAGAGCTGTGGTTTGACTTACAAAGATCTCTGTTGCGTCTCCATTTCTTCTCGTCGACTTCGCCGCCTCTCCGACGACGACTGTCCGTGGTCTCATCTTCTCTCCTCCGATTACCCTTCATCGTCTTCTTCTTTTCCATCCTCCGCCTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGAAATAGGAAGGAAGCGGCGCATAGGAGAGCAGTGCTTAGAAAGGAAAGCCAAATAGCTGAGCACTATAGAAGGCTTGGTGAATTAGAGGAACGGTTGATGGAGGAGACTAACAAATTGACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGGGAAGCAACAGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAAAAGCAAATTGTTGAACAATGCAGTGTATCCGTTGATTCTCGGTATCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCGGAAAGCACTTAAAGATGAAAAACAGAGACTGGAATTAGCTAAAGAAGAGTTAACTTCATTGAAGTACCACCCTCTAAAGGATCATAAATTTATAGATAGCAGTAATAATGAATCTTGCATCAAGAGGAGGTCAAAGAATGTTATAAACGTAAGGTCCTTTCTTGTTGATCATACTTCAAATTTTCTGATTGCGAGTTTAAATATTTTTGTCATGTTCATGATGGTTTGGTTACCAAGAAATCTAACTGCTCCCCGTGAATTCCTGAATTCTAATGTGTGCACTGTGCTCCATTAA

Coding sequence (CDS)

ATGGCTGAATTGCCAGATGAGCTGTGGAGGCAAATTCTCGAAATTGGTGTAAAGAGCTGTGGTTTGACTTACAAAGATCTCTGTTGCGTCTCCATTTCTTCTCGTCGACTTCGCCGCCTCTCCGACGACGACTGTCCGTGGTCTCATCTTCTCTCCTCCGATTACCCTTCATCGTCTTCTTCTTTTCCATCCTCCGCCTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGAAATAGGAAGGAAGCGGCGCATAGGAGAGCAGTGCTTAGAAAGGAAAGCCAAATAGCTGAGCACTATAGAAGGCTTGGTGAATTAGAGGAACGGTTGATGGAGGAGACTAACAAATTGACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGGGAAGCAACAGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAAAAGCAAATTGTTGAACAATGCAGTGTATCCGTTGATTCTCGGTATCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCGGAAAGCACTTAAAGATGAAAAACAGAGACTGGAATTAGCTAAAGAAGAGTTAACTTCATTGAAGTACCACCCTCTAAAGGATCATAAATTTATAGATAGCAGTAATAATGAATCTTGCATCAAGAGGAGGTCAAAGAATGTTATAAACGTAAGGTCCTTTCTTGTTGATCATACTTCAAATTTTCTGATTGCGAGTTTAAATATTTTTGTCATGTTCATGATGGTTTGGTTACCAAGAAATCTAACTGCTCCCCGTGAATTCCTGAATTCTAATGTGTGCACTGTGCTCCATTAA

Protein sequence

MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKLTTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQIAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVINVRSFLVDHTSNFLIASLNIFVMFMMVWLPRNLTAPREFLNSNVCTVLH

Homology

[Close]

BLAST of CaUC04G071940 vs. NCBI nr
Match: XP_038882938.1 (F-box protein SKIP24 [Benincasa hispida] >XP_038882939.1 F-box protein SKIP24 [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-103
Identity = 211/234 (90.17%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELP ELW QILE+GVKS  LTYKDLCCVSISS RLRRLSDDDC WSHLLSSDYPSSSS
Sbjct: 1   MSELPVELWTQILEVGVKSYVLTYKDLCCVSISSPRLRRLSDDDCLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDRNRK+AAH RAVLRKESQIAEHYRRLGELE  LM ETNKL
Sbjct: 61  SFPSSASSSKSLYKIRLERDRNRKKAAHMRAVLRKESQIAEHYRRLGELENWLMVETNKL 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQ QIVEQCSVSVDSR RTLDMELK+CKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQTQIVEQCSVSVDSRSRTLDMELKICKQQ 180

Query: 181 IAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVIN 235
           IAIF KALKDE+QRL LAKEELTSLKYHPLKDHKFIDSSNN S IKRRSK+ IN
Sbjct: 181 IAIFWKALKDERQRLNLAKEELTSLKYHPLKDHKFIDSSNNVSHIKRRSKDAIN 234

[Close]

BLAST of CaUC04G071940 vs. NCBI nr
Match: TYK09707.1 (F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 4.9e-103
Identity = 212/247 (85.83%), Postives = 228/247 (92.31%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVINVRSFLV 240
           IAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ INVR F+ 
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINVR-FIS 240

Query: 241 DHTSNFL 248
            +T  FL
Sbjct: 241 LNTLLFL 246

[Close]

BLAST of CaUC04G071940 vs. NCBI nr
Match: XP_016901824.1 (PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo])

HSP 1 Score: 381.7 bits (979), Expect = 5.4e-102
Identity = 206/234 (88.03%), Postives = 220/234 (94.02%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVIN 235
           IAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ IN
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 234

[Close]

BLAST of CaUC04G071940 vs. NCBI nr
Match: KAA0043654.1 (F-box protein SKIP24 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 3.5e-101
Identity = 212/252 (84.13%), Postives = 228/252 (90.48%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVINV 240
           LCKQQIAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ INV
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINV 240

Query: 241 RSFLVDHTSNFL 248
           R F+  +T  FL
Sbjct: 241 R-FISLNTLLFL 251

[Close]

BLAST of CaUC04G071940 vs. NCBI nr
Match: XP_016901822.1 (PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo] >XP_016901823.1 PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 3.9e-100
Identity = 206/239 (86.19%), Postives = 220/239 (92.05%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVIN 235
           LCKQQIAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ IN
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 239

[Close]

BLAST of CaUC04G071940 vs. ExPASy Swiss-Prot
Match: Q9CAZ0 (F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 221.9 bits (564), Expect = 9.4e-57
Identity = 129/234 (55.13%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 3   ELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSS-SSS 62
           E+PDELWR+ILEIGVKS   +YKDLCC+SISSRRL RLS DD  W  LL  D+P+   S+
Sbjct: 5   EIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVSA 64

Query: 63  FPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKLT 122
             SS S +K +Y  R ER++ RK AAHRRA+LRKES+I+E  RR+ ELE RL +E  +L 
Sbjct: 65  SSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERLQ 124

Query: 123 TTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQI 182
           ++  + S+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ R R L+ME+KLCKQQI
Sbjct: 125 SSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQI 184

Query: 183 AIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIK-RRSKNVIN 235
               +AL++ K R ++A +EL S+KYHPL+D+K I + +  S  K ++ K  IN
Sbjct: 185 MGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

[Close]

BLAST of CaUC04G071940 vs. ExPASy TrEMBL
Match: A0A5D3CCI3 (F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001230 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.4e-103
Identity = 212/247 (85.83%), Postives = 228/247 (92.31%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVINVRSFLV 240
           IAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ INVR F+ 
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINVR-FIS 240

Query: 241 DHTSNFL 248
            +T  FL
Sbjct: 241 LNTLLFL 246

[Close]

BLAST of CaUC04G071940 vs. ExPASy TrEMBL
Match: A0A1S4E0S8 (F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.6e-102
Identity = 206/234 (88.03%), Postives = 220/234 (94.02%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQ 180
           TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVIN 235
           IAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ IN
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 234

[Close]

BLAST of CaUC04G071940 vs. ExPASy TrEMBL
Match: A0A5A7TK06 (F-box protein SKIP24 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001020 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.7e-101
Identity = 212/252 (84.13%), Postives = 228/252 (90.48%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVINV 240
           LCKQQIAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ INV
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINV 240

Query: 241 RSFLVDHTSNFL 248
           R F+  +T  FL
Sbjct: 241 R-FISLNTLLFL 251

[Close]

BLAST of CaUC04G071940 vs. ExPASy TrEMBL
Match: A0A1S4E0Q4 (F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.9e-100
Identity = 206/239 (86.19%), Postives = 220/239 (92.05%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVIN 235
           LCKQQIAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ IN
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 239

[Close]

BLAST of CaUC04G071940 vs. ExPASy TrEMBL
Match: A0A1S3C1S8 (F-box protein SKIP24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.9e-100
Identity = 206/239 (86.19%), Postives = 220/239 (92.05%), Query Frame = 0


Query: 1   MAELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSSSS 60
           M+ELPDELW QIL+IGVK+  LTYKDLCCVSISS RLRRLSD D  WSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKL 120
           SFPSSASSSKSLYKIRLERDR RK+AAH RAVLRKESQIAEHYRR+G+LEERL+EET+K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTLTELSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELK 180
           TTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSR RTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIKRRSKNVIN 235
           LCKQQIAIF+KALKDEK+RLELAKEELTSLKYHPLKDHK ++SSNN+S IKRRSK+ IN
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 239

[Close]

BLAST of CaUC04G071940 vs. TAIR 10
Match: AT1G08710.1 (F-box family protein )

HSP 1 Score: 221.9 bits (564), Expect = 6.7e-58
Identity = 129/234 (55.13%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 3   ELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSS-SSS 62
           E+PDELWR+ILEIGVKS   +YKDLCC+SISSRRL RLS DD  W  LL  D+P+   S+
Sbjct: 5   EIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVSA 64

Query: 63  FPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKLT 122
             SS S +K +Y  R ER++ RK AAHRRA+LRKES+I+E  RR+ ELE RL +E  +L 
Sbjct: 65  SSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERLQ 124

Query: 123 TTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQI 182
           ++  + S+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ R R L+ME+KLCKQQI
Sbjct: 125 SSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQI 184

Query: 183 AIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIK-RRSKNVIN 235
               +AL++ K R ++A +EL S+KYHPL+D+K I + +  S  K ++ K  IN
Sbjct: 185 MGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

[Close]

BLAST of CaUC04G071940 vs. TAIR 10
Match: AT1G08710.2 (F-box family protein )

HSP 1 Score: 221.9 bits (564), Expect = 6.7e-58
Identity = 129/234 (55.13%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 3   ELPDELWRQILEIGVKSCGLTYKDLCCVSISSRRLRRLSDDDCPWSHLLSSDYPSS-SSS 62
           E+PDELWR+ILEIGVKS   +YKDLCC+SISSRRL RLS DD  W  LL  D+P+   S+
Sbjct: 5   EIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVSA 64

Query: 63  FPSSASSSKSLYKIRLERDRNRKEAAHRRAVLRKESQIAEHYRRLGELEERLMEETNKLT 122
             SS S +K +Y  R ER++ RK AAHRRA+LRKES+I+E  RR+ ELE RL +E  +L 
Sbjct: 65  SSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERLQ 124

Query: 123 TTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRYRTLDMELKLCKQQI 182
           ++  + S+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ R R L+ME+KLCKQQI
Sbjct: 125 SSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQI 184

Query: 183 AIFRKALKDEKQRLELAKEELTSLKYHPLKDHKFIDSSNNESCIK-RRSKNVIN 235
               +AL++ K R ++A +EL S+KYHPL+D+K I + +  S  K ++ K  IN
Sbjct: 185 MGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

The following BLAST results are available for this feature:

BLAST of CaUC04G071940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882938.1	2.2e-103	90.17	F-box protein SKIP24 [Benincasa hispida] >XP_038882939.1 F-box protein SKIP24 [B...	[more]
TYK09707.1	4.9e-103	85.83	F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016901824.1	5.4e-102	88.03	PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo]	[more]
KAA0043654.1	3.5e-101	84.13	F-box protein SKIP24 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_016901822.1	3.9e-100	86.19	PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo] >XP_016901823.1 PREDIC...	[more]

BLAST of CaUC04G071940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAZ0	9.4e-57	55.13	F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2	[more]

BLAST of CaUC04G071940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCI3	2.4e-103	85.83	F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4E0S8	2.6e-102	88.03	F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]
A0A5A7TK06	1.7e-101	84.13	F-box protein SKIP24 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S4E0Q4	1.9e-100	86.19	F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]
A0A1S3C1S8	1.9e-100	86.19	F-box protein SKIP24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]

BLAST of CaUC04G071940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08710.1	6.7e-58	55.13	F-box family protein	[more]
AT1G08710.2	6.7e-58	55.13	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 181..208
None	No IPR available	COILS	Coil	Coil	coord: 92..126
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..106 e-value: 3.9E-5 score: 25.5
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G071940.1	CaUC04G071940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding