CaUC04G071870 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G071870
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein 5, chloroplastic
Location	Ciama_Chr04: 20238738 .. 20241635 (+)
RNA-Seq Expression	CaUC04G071870
Synteny	CaUC04G071870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAGATGTGTCGGAGGCAATGGCAATTGGCAAAGCCATTTTTCTATTGTATTGTGATGTAAGAAACTTCTGAGTGTAGTTTTGATTGCAATATTGAGTTAGGTTTAATCTTAATTAAGTATTAATTCACTGATTATTGAGTTCAAATCAACCAAATTAAACTGATATATGAGTGTTAAATTACAAGTTTAGTTCTTAAACTTTTGAAACCATGTCTTTAAAGTCTAAATTTCTTTTATATAAGCCTCTAATTTACTTAATTTTATGTCAATCTTTAATAAGTTTTTGACCTATTATATATTATTATTATTAGACGCAGAAGCTTATAAAACATGAAATTATGAATTTGGAGATTTATTGAGATATTTTAAGTTTTATGGATTTAGTAGAAAGTTTAGTGTAAGAATTAACTTGAAATTTAACCCTAAATAATTTACCTTATTCAACTAAATCTAGGGGGTAAAAATGACTTTTTGTAAAAAAAAAGAAAGAAATAAAATTCAAAATGTCATAATAAAGCTTATCCAAAGGTAGTGGGGGGCTCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTAAGTCTCTCTTCCTGGATTTTGACGGAATCGAATGAATGATTTTGTTTGATTTTGTATCTTCGTTTCTCTTTGTACTTCATGGTTTGCTGTGTGTTTATTCAAATGGCTAATTTTTGTTCTCGAACTCCAGAAACTATGTTGTTGTGCTTGAAATAATTTCCTCGCAGTCATTTGTTTGTCAGGCATTTTGTCAAACAGTTGGTATCTGTGTGCTGAGACTGTCGATTTTACGCTTCTCATTTGATGTGCTCTGGATCTCGCTTGCCTGAATTTGTCTTGTGTTCTGTATCTCGTGTTTTATATGCTGACTGCTCTGTTACTTGTTCATCATCCTCAATTTGATATATAGTTTACAAGTTTCCTAGTCTTGAAATACAGTTGTATTTCATTGAAGAGATATTGTTTTGTGAGTGAATTTCATATTTTATATATGTTGATTATTAATTTGATTCATGTAATATCAAATAAAGAGAAATTAACATTGCAAGGATCCCTAGTACTCCACGCCGTTAGATAACATATTAAAAAAATGAACTCAATCAAAAGCCCTTGGAATAGATTACGGTGTAGTTAATCTTTGGTTATATTACAAGCTTGTTAAGGTCTCTAGACAAGCTATTTAATCTTGGTTATATTAATGAAAAAAATATTACAAGCTTGTTGGCAAAACTTTTAAAGTTGTGTCTACTAACTAATGGGTCTCTAAACTTTTAATACTGTGTATGGTAGATCCCCAAGGTTTAAACAATATCTAGTAGGTCTTTAAAATATCAGTCTTAAACTATTAACTTTGTCTCCATTTGGCTTTGAACTTTTAAAAACATCTCATTTATCAAGTTTAGGATCTATCAAACACTTTTTAAAATTAAGAGATCGATTAGACATAATTCTAAAAGCTTAGAGACCAAATTTATACATACTTGGCTTTAATTTGAATGATTATTTCCTTGCATTCTATGTATCTCAGCCCAATTACCACTCCTTTGTTGTGGTTTCCATTTCAGGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGTGTTGTTAGTTGTCAAAGCTGCGTCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTAGCTCCTTCAATTCGATTCTTGCAGATTTAGAGGTGACCCCATTTCTCCTCATTGCTTCCAATTTACTCTGTCTAATTTCTTTATACTTTCCAGGAAATGTACTTGCTTTCTTTATATATCTGAAAGAATCCAGTGAGTAATGAAATGTGCAAATTGTGCTTAGTTTTGAATGACTAATGCCTAATGGTGAGTTGAAAGATAACTGTACAGTTCAACAAACTGAATACTTGATTTAGATTTTTATCAGTAGATCCCCTGATCTCTTGAAACATTCATCTCCCCATAATATATAGCTTGCTAAAAAACCTTGCTCAAAGCATTATCTTAGGAACTTATACTAAGATGAAGTTGGTTCATTTGTTCCTTTTAAATGTACTGCAGATGTATTCTTGTCTCTCATTTCTTTTCCAAATAGAATGAGAAGGCATGTCGAGATGAATGCTCCCGTCGAGGGAGGAGTTTGAGCTTGACTTGTATGTTTTAATTTGTAATTGACTGGTTGAATAGAGATGAAAGCTAGGGGTGATATACATTTCAACAAACAAAGAGTTCTGGCTTTTGATGGAGATGGACTAGTGAGTAGATTTAATTTGTGGGAAAGGATGGGCACTCATGATAGCAAATCACTTTTGAATATCTTGTTATTTAGGATTTAGAGCTCATTTGCATTTCTGCTGTGAGCTTTGTCCTTTGATTGTGTTTGAGAACTTTGAACCCCTCAACAGATGGGTAGTTCTTAGAGTTTAGTATAACTTGTAATTCTCTAAAACTACTCATCAAAATTTTTATATTCTTTAACAACAGGACGTGGAGATTCGGATCACAAATCTTTTGGTAATATGCCTTAAC

mRNA sequence

ATTTAGATGTGTCGGAGGCAATGGCAATTGGCAAAGCCATTTTTCTATTGTATTGTGATTGGGGGGCTCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGTGTTGTTAGTTGTCAAAGCTGCGTCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGACGTGGAGATTCGGATCACAAATCTTTTGGTAATATGCCTTAAC

Coding sequence (CDS)

ATGGCAATTGGCAAAGCCATTTTTCTATTGTATTGTGATTGGGGGGCTCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCGCCGTCGCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAACACAGTGTTGTTAGTTGTCAAAGCTGCGTCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGACGTGGAGATTCGGATCACAAATCTTTTGGTAATATGCCTTAAC

Protein sequence

MAIGKAIFLLYCDWGAPRPEKNTMAFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNDVEIRITNLLVICLN

Homology

[Close]

BLAST of CaUC04G071870 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63
Identity = 139/155 (89.68%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 25  AFLLYSNPLSTSLHSFPFS--PSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNP 84
           +FLL SNPLSTSLHSFPFS  PSPSPSCFPATSA PS MLLMKPIGFQPKHFNGVRL  P
Sbjct: 3   SFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLGKP 62

Query: 85  SFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARM 144
           SFVEN   L+VKAASEIDA G+TDSSE QPPAEAK EDVPVDKLPLESKLQERLEQKARM
Sbjct: 63  SFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKARM 122

Query: 145 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN
Sbjct: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 157

[Close]

BLAST of CaUC04G071870 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61
Identity = 135/156 (86.54%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 24  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 83
           MAFLL SNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRN 60

Query: 84  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 143
            SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDVPVDKLPLESKLQERLEQK R
Sbjct: 61  VSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTR 120

Query: 144 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]

BLAST of CaUC04G071870 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 9.2e-61
Identity = 136/158 (86.08%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 24  MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRL 83
           MAFLL SNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 84  RNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQK 143
           RNPSFVENTV  +VKAASEIDATGETDS+EP+PPAEAK EDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 144 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 158

[Close]

BLAST of CaUC04G071870 vs. NCBI nr
Match: XP_004144312.1 (50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_012356 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-60
Identity = 136/153 (88.89%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 25  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSF 84
           +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGVRLRN SF
Sbjct: 3   SFLLSSNPLSTSFH---FSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSF 62

Query: 85  VENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKL 144
           VENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVDKLPLESKLQERLEQKARMKL
Sbjct: 63  VENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKL 122

Query: 145 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN
Sbjct: 123 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 152

[Close]

BLAST of CaUC04G071870 vs. NCBI nr
Match: KAG7013851.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-60
Identity = 136/156 (87.18%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 24  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 83
           MAFLL SNPLS SLHS  F  SPSPSPSCFPA  AT +SMLLMKP GFQPKHFNGVRLRN
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRN 60

Query: 84  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 143
           PSFVENTV  +VKAASEIDATGETDS+EP+P AEAK EDV VDKLPLESKLQERLEQKAR
Sbjct: 61  PSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKLQERLEQKAR 120

Query: 144 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]

BLAST of CaUC04G071870 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-15
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 38  HSFPFSP-SPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKAA 97
           +SF  +P + S S FP  +A P S +    IG       G R+  P   +     +  A+
Sbjct: 7   NSFTTTPVTSSSSLFPHPTANPISRV---RIGLPTNCLKGFRILTPIVQKPRKNSIFIAS 66

Query: 98  SEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV 157
           +   A         +  ++ +++ V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV
Sbjct: 67  AAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLV 126

Query: 158 QKRHLRKKGRWPPSKMKKLK 177
           QKR LRKKG WPPSKMKKL+
Sbjct: 127 QKRRLRKKGNWPPSKMKKLE 143

[Close]

BLAST of CaUC04G071870 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-14
Identity = 73/147 (49.66%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 36  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKA 95
           SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKA
Sbjct: 8   SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHGRIVVKA 67

Query: 96  ASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQER---LEQKARMKLAKKIRL 155
           A    A+G  D +EP+   E KT    VPVDKLPLESK  +    LE + +MKLAKKIRL
Sbjct: 68  A----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRL 127

Query: 156 RRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           RRKRLV+KR +RKKGRWPPSKMKK KN
Sbjct: 128 RRKRLVRKRKMRKKGRWPPSKMKKNKN 147

[Close]

BLAST of CaUC04G071870 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 88  TVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKK 147
           TV+ +V AA+E  A  + D S      + +  ++ V  LPLESKLQ +LEQK +MK+AKK
Sbjct: 58  TVVAMVSAAAEETAGEDGDQS------KVEEANISVQNLPLESKLQLKLEQKIKMKMAKK 117

Query: 148 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           IRLRR RL++KR LRK+G WPPSKMKKLKN
Sbjct: 118 IRLRRNRLMRKRKLRKRGAWPPSKMKKLKN 141

[Close]

BLAST of CaUC04G071870 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.9e-62
Identity = 135/156 (86.54%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 24  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 83
           MAFLL SNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRN 60

Query: 84  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 143
            SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDVPVDKLPLESKLQERLEQK R
Sbjct: 61  VSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTR 120

Query: 144 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]

BLAST of CaUC04G071870 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.4e-61
Identity = 136/158 (86.08%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 24  MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRL 83
           MAFLL SNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 84  RNPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQK 143
           RNPSFVENTV  +VKAASEIDATGETDS+EP+PPAEAK EDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 144 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 158

[Close]

BLAST of CaUC04G071870 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 9.9e-61
Identity = 136/153 (88.89%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 25  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSF 84
           +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGVRLRN SF
Sbjct: 3   SFLLSSNPLSTSFH---FSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSF 62

Query: 85  VENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKL 144
           VENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVDKLPLESKLQERLEQKARMKL
Sbjct: 63  VENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKL 122

Query: 145 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN
Sbjct: 123 AKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 152

[Close]

BLAST of CaUC04G071870 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58
Identity = 131/156 (83.97%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 24  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRN 83
           MAFLL SNPLS SLHS     SPSPSPSCFP   +  +SM LMKP GFQPKHFNGVRLRN
Sbjct: 1   MAFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRN 60

Query: 84  PSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKAR 143
           PSFVENTV  +VKAASEID TGETDS+EP+P AEAK EDVPVDKLPLESKLQERLEQKAR
Sbjct: 61  PSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKAR 120

Query: 144 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 121 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]

BLAST of CaUC04G071870 vs. ExPASy TrEMBL
Match: A0A6J1EBJ3 (50S ribosomal protein 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432511 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 8.1e-55
Identity = 129/157 (82.17%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 21  KNTMAFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLR 80
           +NTMAFLL+SNP+STSLHS  F   PSPSCFP TSA  SSMLLMKP  FQPK+FNG  LR
Sbjct: 7   ENTMAFLLFSNPVSTSLHSSLF--PPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLR 66

Query: 81  NPSFVENTVLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKA 140
           NPSFVEN   L+VKAASEIDAT ETDSSEPQPPA      VPVDKLPLESKLQER EQKA
Sbjct: 67  NPSFVENRSSLIVKAASEIDATVETDSSEPQPPA------VPVDKLPLESKLQEREEQKA 126

Query: 141 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN
Sbjct: 127 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 155

[Close]

BLAST of CaUC04G071870 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 81.6 bits (200), Expect = 7.3e-16
Identity = 73/147 (49.66%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 36  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVRLRNPSFVENTVLLVVKA 95
           SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKA
Sbjct: 8   SLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHGRIVVKA 67

Query: 96  ASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQER---LEQKARMKLAKKIRL 155
           A    A+G  D +EP+   E KT    VPVDKLPLESK  +    LE + +MKLAKKIRL
Sbjct: 68  A----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRL 127

Query: 156 RRKRLVQKRHLRKKGRWPPSKMKKLKN 178
           RRKRLV+KR +RKKGRWPPSKMKK KN
Sbjct: 128 RRKRLVRKRKMRKKGRWPPSKMKKNKN 147

The following BLAST results are available for this feature:

BLAST of CaUC04G071870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881132.1	2.0e-63	89.68	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]
XP_022154476.1	1.4e-61	86.54	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_022949869.1	9.2e-61	86.08	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]	[more]
XP_004144312.1	2.0e-60	88.89	50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypot...	[more]
KAG7013851.1	2.0e-60	87.18	50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of CaUC04G071870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11891	4.6e-15	44.29	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
Q9LER7	1.0e-14	49.66	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]
P27684	2.3e-14	56.67	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]

BLAST of CaUC04G071870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNT9	6.9e-62	86.54	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GE62	4.4e-61	86.08	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0L3F4	9.9e-61	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A6J1HS41	1.2e-58	83.97	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1EBJ3	8.1e-55	82.17	50S ribosomal protein 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CaUC04G071870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	7.3e-16	49.66	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..124
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 24..177
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 24..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G071870.1	CaUC04G071870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome