CaUC04G069880 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GAAGAAAAGACAAGCGAAAATCAGAACAAAGAGGCAGACATAAGAGAAACGCAGAAAAGAGAGGAAAAAGCACGTATAGAAATAGCAGAAACCTGGGATAGCATTCTATTTGCTCAAGTAATAAGAGGTTTGTTGTTAGTAACTCAATCAATTCTTAGAAAATATATTGTCTTACCCTCATTAATAATAGCTAAAAATCTTATCCGTATGCTATTATTTCAATTTCCTGAATGGTCCGAGGATTTTAAAAATTGGAATAAAGAAATGCATGTAAAGTGCACCTATAATGGTGTTCAATTATCAGAAAAAGAATTTCCAAAAAATTGGTTAACGGACGGTATTCAAATAAAGATCTTATTTCCTTTTCGTCTGAAACCGTGGCACACATCTAGGTTACAATCCCCTAATAAAGATTCAATAAAAAAGAAAGGACAAAAAAATGATTTTTGTTTTTTAACAGTTTGGGGAATGGAAGCTGAACTGCCTTTTGGTTCTCCCCGAAAACAACTTTCGTTTTTTGAACCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGACAGACTAGACAAATCTTTTTTTTTTCTTTTGATATTCCTGGACTAACGAAAACACTTTTTCGACCTTGGATATGGACAAACACAGAATTGACCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA GAAGAAAAGACAAGCGAAAATCAGAACAAAGAGGCAGACATAAGAGAAACGCAGAAAAGAGAGGAAAAAGCACGTATAGAAATAGCAGAAACCTGGGATAGCATTCTATTTGCTCAATTTGGGGAATGGAAGCTGAACTGCCTTTTGGTTCTCCCCGAAAACAACTTTCAATTGACCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA GAAGAAAAGACAAGCGAAAATCAGAACAAAGAGGCAGACATAAGAGAAACGCAGAAAAGAGAGGAAAAAGCACGTATAGAAATAGCAGAAACCTGGGATAGCATTCTATTTGCTCAATTTGGGGAATGGAAGCTGAACTGCCTTTTGGTTCTCCCCGAAAACAACTTTCAATTGACCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQFGEWKLNCLLVLPENNFQLTRRNETKDTVELGQLLYEVYPMLDAEAHNRSI Homology
BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009420853.1 (Ycf1 [Citrullus colocynthis] >ASP44532.1 Ycf1 [Citrullus colocynthis]) HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. NCBI nr
Match: QZL38742.1 (Ycf1 protein [Citrullus ecirrhosus]) HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009431615.1 (Ycf1 [Citrullus amarus] >APW82521.1 Ycf1 [Citrullus lanatus subsp. vulgaris] >ASY96227.1 Ycf1 [Citrullus amarus]) HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009326048.1 (Ycf1 [Citrullus lanatus] >YP_009348090.1 Ycf1 [Citrullus mucosospermus] >APW82946.1 Ycf1 [Citrullus lanatus subsp. vulgaris] >APD52540.1 Ycf1 [Citrullus lanatus] >APW82776.1 Ycf1 [Citrullus mucosospermus] >APW82861.1 Ycf1 [Citrullus mucosospermus] >APW83031.1 Ycf1 [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009431701.1 (Ycf1 [Citrullus rehmii] >ASY96312.1 Ycf1 [Citrullus rehmii]) HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy Swiss-Prot
Match: Q14FA0 (Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 2.3e-04 Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy Swiss-Prot
Match: A4GYX4 (Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 2.3e-04 Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy Swiss-Prot
Match: Q49KU0 (Protein TIC 214 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=TIC214 PE=3 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04 Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A1P8LE53 (Ycf1 OS=Citrullus mucosospermus OX=519315 GN=ycf1 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A1P8LFC3 (Ycf1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf1 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A343A8H0 (Protein TIC 214 OS=Citrullus lanatus OX=3654 GN=ycf1 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A249RXF8 (Protein TIC 214 OS=Citrullus rehmii OX=260675 GN=ycf1 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A249RX64 (Protein TIC 214 OS=Citrullus amarus OX=1567104 GN=ycf1 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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