CaUC04G069880 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G069880
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein TIC 214
Location	Ciama_Chr04: 13559001 .. 13559750 (+)
RNA-Seq Expression	CaUC04G069880
Synteny	CaUC04G069880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAAAGACAAGCGAAAATCAGAACAAAGAGGCAGACATAAGAGAAACGCAGAAAAGAGAGGAAAAAGCACGTATAGAAATAGCAGAAACCTGGGATAGCATTCTATTTGCTCAAGTAATAAGAGGTTTGTTGTTAGTAACTCAATCAATTCTTAGAAAATATATTGTCTTACCCTCATTAATAATAGCTAAAAATCTTATCCGTATGCTATTATTTCAATTTCCTGAATGGTCCGAGGATTTTAAAAATTGGAATAAAGAAATGCATGTAAAGTGCACCTATAATGGTGTTCAATTATCAGAAAAAGAATTTCCAAAAAATTGGTTAACGGACGGTATTCAAATAAAGATCTTATTTCCTTTTCGTCTGAAACCGTGGCACACATCTAGGTTACAATCCCCTAATAAAGATTCAATAAAAAAGAAAGGACAAAAAAATGATTTTTGTTTTTTAACAGTTTGGGGAATGGAAGCTGAACTGCCTTTTGGTTCTCCCCGAAAACAACTTTCGTTTTTTGAACCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGACAGACTAGACAAATCTTTTTTTTTTCTTTTGATATTCCTGGACTAACGAAAACACTTTTTCGACCTTGGATATGGACAAACACAGAATTGACCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA

mRNA sequence

GAAGAAAAGACAAGCGAAAATCAGAACAAAGAGGCAGACATAAGAGAAACGCAGAAAAGAGAGGAAAAAGCACGTATAGAAATAGCAGAAACCTGGGATAGCATTCTATTTGCTCAATTTGGGGAATGGAAGCTGAACTGCCTTTTGGTTCTCCCCGAAAACAACTTTCAATTGACCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA

Coding sequence (CDS)

GAAGAAAAGACAAGCGAAAATCAGAACAAAGAGGCAGACATAAGAGAAACGCAGAAAAGAGAGGAAAAAGCACGTATAGAAATAGCAGAAACCTGGGATAGCATTCTATTTGCTCAATTTGGGGAATGGAAGCTGAACTGCCTTTTGGTTCTCCCCGAAAACAACTTTCAATTGACCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATA

Protein sequence

EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQFGEWKLNCLLVLPENNFQLTRRNETKDTVELGQLLYEVYPMLDAEAHNRSI

Homology

[Close]

BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009420853.1 (Ycf1 [Citrullus colocynthis] >ASP44532.1 Ycf1 [Citrullus colocynthis])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 219 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 257

[Close]

BLAST of CaUC04G069880 vs. NCBI nr
Match: QZL38742.1 (Ycf1 protein [Citrullus ecirrhosus])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009431615.1 (Ycf1 [Citrullus amarus] >APW82521.1 Ycf1 [Citrullus lanatus subsp. vulgaris] >ASY96227.1 Ycf1 [Citrullus amarus])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009326048.1 (Ycf1 [Citrullus lanatus] >YP_009348090.1 Ycf1 [Citrullus mucosospermus] >APW82946.1 Ycf1 [Citrullus lanatus subsp. vulgaris] >APD52540.1 Ycf1 [Citrullus lanatus] >APW82776.1 Ycf1 [Citrullus mucosospermus] >APW82861.1 Ycf1 [Citrullus mucosospermus] >APW83031.1 Ycf1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. NCBI nr
Match: YP_009431701.1 (Ycf1 [Citrullus rehmii] >ASY96312.1 Ycf1 [Citrullus rehmii])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. ExPASy Swiss-Prot
Match: Q14FA0 (Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-04
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1   EEKTSENQNKEAD----IRETQKREEKARIEIAETWDSILFAQ 40
           EEKT E+  KE +     RE  KREEK RIEIAETWDSI+FAQ
Sbjct: 744 EEKTKESDKKEKEEIKNRREEDKREEKVRIEIAETWDSIIFAQ 786

[Close]

BLAST of CaUC04G069880 vs. ExPASy Swiss-Prot
Match: A4GYX4 (Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-04
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1   EEKTSENQNKEAD----IRETQKREEKARIEIAETWDSILFAQ 40
           EEKT E+  KE +     RE  KREEK RIEIAETWDSI+FAQ
Sbjct: 746 EEKTKESDKKEKEEIKNRREEDKREEKVRIEIAETWDSIIFAQ 788

[Close]

BLAST of CaUC04G069880 vs. ExPASy Swiss-Prot
Match: Q49KU0 (Protein TIC 214 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   EEKTSENQ-NKEADIRETQKREEKARIEIAETWDSILFAQ 40
           +EK  EN+  KE D RE  KR+EKARIEIA+TWD +LFAQ
Sbjct: 765 QEKKKENEKKKEEDKREEYKRQEKARIEIAQTWDRVLFAQ 804

[Close]

BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A1P8LE53 (Ycf1 OS=Citrullus mucosospermus OX=519315 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A1P8LFC3 (Ycf1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A343A8H0 (Protein TIC 214 OS=Citrullus lanatus OX=3654 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A249RXF8 (Protein TIC 214 OS=Citrullus rehmii OX=260675 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

[Close]

BLAST of CaUC04G069880 vs. ExPASy TrEMBL
Match: A0A249RX64 (Protein TIC 214 OS=Citrullus amarus OX=1567104 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1   EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 40
           EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ
Sbjct: 740 EEKTSENQNKEADIRETQKREEKARIEIAETWDSILFAQ 778

The following BLAST results are available for this feature:

BLAST of CaUC04G069880 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009420853.1	2.2e-09	100.00	Ycf1 [Citrullus colocynthis] >ASP44532.1 Ycf1 [Citrullus colocynthis]	[more]
QZL38742.1	2.2e-09	100.00	Ycf1 protein [Citrullus ecirrhosus]	[more]
YP_009431615.1	2.2e-09	100.00	Ycf1 [Citrullus amarus] >APW82521.1 Ycf1 [Citrullus lanatus subsp. vulgaris] >AS...	[more]
YP_009326048.1	2.2e-09	100.00	Ycf1 [Citrullus lanatus] >YP_009348090.1 Ycf1 [Citrullus mucosospermus] >APW8294...	[more]
YP_009431701.1	2.2e-09	100.00	Ycf1 [Citrullus rehmii] >ASY96312.1 Ycf1 [Citrullus rehmii]	[more]

BLAST of CaUC04G069880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14FA0	2.3e-04	65.12	Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1	[more]
A4GYX4	2.3e-04	65.12	Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1	[more]
Q49KU0	3.8e-04	65.00	Protein TIC 214 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=TIC214 PE=3 S...	[more]

BLAST of CaUC04G069880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LE53	1.1e-09	100.00	Ycf1 OS=Citrullus mucosospermus OX=519315 GN=ycf1 PE=4 SV=1	[more]
A0A1P8LFC3	1.1e-09	100.00	Ycf1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf1 PE=4 SV=1	[more]
A0A343A8H0	1.1e-09	100.00	Protein TIC 214 OS=Citrullus lanatus OX=3654 GN=ycf1 PE=3 SV=1	[more]
A0A249RXF8	1.1e-09	100.00	Protein TIC 214 OS=Citrullus rehmii OX=260675 GN=ycf1 PE=3 SV=1	[more]
A0A249RX64	1.1e-09	100.00	Protein TIC 214 OS=Citrullus amarus OX=1567104 GN=ycf1 PE=3 SV=1	[more]

BLAST of CaUC04G069880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 1..40 e-value: 3.7E-10 score: 38.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G069880.1	CaUC04G069880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane