CaUC04G068840 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G068840
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	SWIB domain-containing protein
Location	Ciama_Chr04: 8369118 .. 8370770 (+)
RNA-Seq Expression	CaUC04G068840
Synteny	CaUC04G068840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCCAAAACGGATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGTTCTTTTTTGTCTTATTTTTATGGGTTTTTTTGTTATCTGCTTTAGATACATATTGATTATGCCGCTATCGACCTGACAGAGACCTCCCTTGTTTAATCTACTTTCAAACTATTTGATGTAGATTCTACGTTTTATGCTGGTGAAAGTATAGATTAAAATGGGGAACAGGGTAGGAGAAGAAAGCCCATAAGTTTAAAGACCCAGGATGAAAAAGAATCTCCTTAAGTGAAAGTTATGAGAAACTGATGGAGGGTCAAGGTCCAAGACAAAATACAGTTAATAAAACCATGTCTTTTCAACGAAATCGTATAGACTGAGAATGAGGTTACAAAGAGAGTCTGATAAAGCCCAACCAGAACTTGGAGGATATTGAAACGTAAAAGATAAACAGCTACAAAATAATTCTAAGTATTCGAGGTACAAGTACCTCCCTGCCTCGAGTATACGCACTCAAGCCTACACCATCTCAACAATTCTCTACTTTCATCCTTTAGCACTCACCCTATTTATGACATCCCCCAACAGTATGCTCTAATAATGTTCCCAACTACTCCCGTCACATTCCTATCCAAGAAGAGATGCTATTGACATTTCTTCAACCATAGGGTCACGTAAGCTTGATTGGCTTACTTTTTTTTTTTTTTGTAATATCTGTGAGTGTCCGAGTCAACTTATGTTCACCTCGACAAATCTCACTAGATAATCCGCTTGATCCTACAATATTTGGGGGTCAAGAAAACTTGTAGGATATTAAATTTTAGGTAGATGACCACTATGGATTGAACTCATCTCCTCTAAGCCTTTTATCAAACTCAATGTCCTTTATTTACTGCTAGGTCAACCCATGATGGTTGATTGGCTTACTACTAATACCAACTAACATATATTTTTTCTTATTAAATAAGACCAGAAGTTCCTTCAAAAATCTATAAAGTCCTATTATGACTCCCAAAGGCATCTCCTTATGCATAAGGGGAAATAGTATTATAACCCATAAATGAGTTATATGGATGATTTTTGTCCGTCCCAGCAAGCAACCCTTCTACTAAGCCTTTATCCATGCCTCTCAAAATAAGTCTGTTAAGCACATCCACAACCACCCCAAAAGGGAATGATGCTTGATTTTACTTGTAAATTCAATAGCTTTTGATCTTTGCACTAGTTTGCGGTACACTTTATGACTGTTCCAATGCTATATGATATTATCTTCGGAAGCTGAAAGTACTCGAAACTTTAATGAAGGAGCATTTTTTTTCTTTTCCAAGTGTTATAAATATGTTTCTGCAAACCCATAAGTGGCTTTCTTTATTCTGATAAAAGGTTATGGATGTGTATATTTCTTGCTTAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAGTGA

mRNA sequence

ATGCTGCCAAAACGGATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAGTGA

Coding sequence (CDS)

ATGCTGCCAAAACGGATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAGTGA

Protein sequence

MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK

Homology

[Close]

BLAST of CaUC04G068840 vs. NCBI nr
Match: XP_038882021.1 (upstream activation factor subunit spp27 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLPKRMKM ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of CaUC04G068840 vs. NCBI nr
Match: XP_008449303.1 (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449305.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 9.7e-46
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  +RMKM +TDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVV+CD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of CaUC04G068840 vs. NCBI nr
Match: XP_031739586.1 (upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739587.1 upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739588.1 upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]

BLAST of CaUC04G068840 vs. NCBI nr
Match: KGN55149.2 (hypothetical protein Csa_012337 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 90  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 149

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 150 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 189

[Close]

BLAST of CaUC04G068840 vs. NCBI nr
Match: XP_022928748.1 (upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 upstream activation factor subunit UAF30 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 8.2e-45
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGK K+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of CaUC04G068840 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-08
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 24  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSI 76
           + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CDDKLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]

BLAST of CaUC04G068840 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 25/77 (32.47%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 24  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVE 83
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CD+KL+ ++LGK    
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGK-STN 183

Query: 84  LAELPALIKLHFPKNPK 101
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]

BLAST of CaUC04G068840 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 25/83 (30.12%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 12  DNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDK 71
           D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CD+K
Sbjct: 112 DSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEK 171

Query: 72  LKSILLGKPKVELAELPALIKLH 95
           ++ I  GK K+ +  +  L+  H
Sbjct: 172 MEPI-FGK-KMTMFSMNKLLTKH 192

[Close]

BLAST of CaUC04G068840 vs. ExPASy TrEMBL
Match: A0A1S3BL41 (upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.7e-46
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  +RMKM +TDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVV+CD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of CaUC04G068840 vs. ExPASy TrEMBL
Match: A0A0A0L2E1 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]

BLAST of CaUC04G068840 vs. ExPASy TrEMBL
Match: A0A6J1ELR1 (upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111435564 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGK K+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of CaUC04G068840 vs. ExPASy TrEMBL
Match: A0A6J1HY33 (upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KL+SILLGK KVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of CaUC04G068840 vs. ExPASy TrEMBL
Match: A0A6J1HWJ0 (protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFK VWSYIKTNNLQDP
Sbjct: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KL+SILLGK KVELAELPALIKLHFPKNPK
Sbjct: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 155

[Close]

BLAST of CaUC04G068840 vs. TAIR 10
Match: AT4G26810.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 6.3e-43
Identity = 82/100 (82.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+R+K  ITDNPKKL NLIDLVNLPSTLR FVGQSQ+SRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVVICD+KLKSILLGK +VEL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of CaUC04G068840 vs. TAIR 10
Match: AT4G26810.2 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 6.3e-43
Identity = 82/100 (82.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+R+K  ITDNPKKL NLIDLVNLPSTLR FVGQSQ+SRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVVICD+KLKSILLGK +VEL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of CaUC04G068840 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-15
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 20  LIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGK 79
           ++ +V +   L  F+G+++VSR    K +W YIK NNLQ+P NK  ++CD++LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 80  PKVELAELPALIKLHFPKN 99
             V   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of CaUC04G068840 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-13
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 30  LREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPA 89
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CDDKLK+I  GK KV + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 90  LIKLHFPKN 99
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]

BLAST of CaUC04G068840 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-11
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 11  TDNPKK----LANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVV 70
           +D+P K       +  +  +   L +F+G  + SR    K +W+YIK+++LQ+P +K  +
Sbjct: 51  SDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREI 110

Query: 71  ICDDKLKSILLGKPKVELAELPALIKLHFPK 98
            CD+ LK I  GK KV   E+  L+  HF K
Sbjct: 111 FCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141

The following BLAST results are available for this feature:

BLAST of CaUC04G068840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882021.1	2.7e-48	97.00	upstream activation factor subunit spp27 [Benincasa hispida]	[more]
XP_008449303.1	9.7e-46	92.00	PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304...	[more]
XP_031739586.1	2.8e-45	93.00	upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739587.1 upstr...	[more]
KGN55149.2	2.8e-45	93.00	hypothetical protein Csa_012337 [Cucumis sativus]	[more]
XP_022928748.1	8.2e-45	92.00	upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 up...	[more]

BLAST of CaUC04G068840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	4.9e-08	48.08	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	1.6e-06	32.47	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	1.0e-05	30.12	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of CaUC04G068840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BL41	4.7e-46	92.00	upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221...	[more]
A0A0A0L2E1	1.4e-45	93.00	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 S...	[more]
A0A6J1ELR1	4.0e-45	92.00	upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HY33	6.8e-45	92.00	upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HWJ0	6.8e-45	92.00	protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1	[more]

BLAST of CaUC04G068840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26810.1	6.3e-43	82.00	SWIB/MDM2 domain superfamily protein	[more]
AT4G26810.2	6.3e-43	82.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	7.2e-15	41.77	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	2.3e-13	46.38	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	8.2e-11	34.07	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 20..100 e-value: 1.0E-11 score: 55.0
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 16..100 e-value: 1.3E-21 score: 78.3
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 13..98
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 24..95 e-value: 8.7E-23 score: 80.0
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 19..97 score: 18.315004
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 2..100
None	No IPR available	PANTHER	PTHR13844:SF45	OS09G0133000 PROTEIN	coord: 2..100
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 24..95 e-value: 6.72543E-22 score: 79.5097

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G068840.1	CaUC04G068840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus