CaUC04G068340 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G068340
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr04: 5991278 .. 5991871 (+)
RNA-Seq ExpressionCaUC04G068340
SyntenyCaUC04G068340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATCCATTCTTTACAACCTTCGCTGATGGTGATGGCAATAACAATTTCAACATTGTCCTTCAAGAACTCTCACGGCTTCTCTTGGATGGCAATCTTTTCATGACCAATATTGTTCCAAGTATCTTCTCATTCGCCAACCTAATATCTTCTGTTTCCTTTCAACATTGTCGATTTCCAAAGAAGAATCTTGATTACGAATTTATTGCGTTTTGGTCTCTTCATTAAATTGCATCCGGAAATTGATCGTGATTTTGGGTAAATTTTGAGAATTGAACAGGTTGGGTCCCTCTGTATTTTAGGGGTGTTCATTATCAATAATGGTTCTAGTTTTAAGAACAGAATTGATTTCGTCAGTTCGAGCGAAGCAAAGACGAGTAATCGAAGAAAAGCGAATCGCAGATATAAAATGAATAAGAACAAATCCCTAAATTGCATTTGGATTAAATTTTCAAACCTTGTCATTCGATATTGTTATACCTGATTCCAGCAGCTATTGCCGCGAGCCTGGCGTCGCCGGAAGTCGCCGGAAGTCGCCGGAAGTGGTCGTTGGTTGCCAGAGATGGTTGTTCAGCTGGCGCTGAAGATTAG

mRNA sequence

ATGTTTGATCCATTCTTTACAACCTTCGCTGATGGTGATGGCAATAACAATTTCAACATTGTCCTTCAAGAACTCTCACGGCTTCTCTTGGATGGCAATCTTTTCATGACCAATATTGTTCCAAGGGTGTTCATTATCAATAATGGTTCTAGTTTTAAGAACAGAATTGATTTCGTCAGTTCGAGCGAAGCAAAGACGACTATTGCCGCGAGCCTGGCGTCGCCGGAAGTCGCCGGAAGTCGCCGGAAGTGGTCGTTGGTTGCCAGAGATGGTTGTTCAGCTGGCGCTGAAGATTAG

Coding sequence (CDS)

ATGTTTGATCCATTCTTTACAACCTTCGCTGATGGTGATGGCAATAACAATTTCAACATTGTCCTTCAAGAACTCTCACGGCTTCTCTTGGATGGCAATCTTTTCATGACCAATATTGTTCCAAGGGTGTTCATTATCAATAATGGTTCTAGTTTTAAGAACAGAATTGATTTCGTCAGTTCGAGCGAAGCAAAGACGACTATTGCCGCGAGCCTGGCGTCGCCGGAAGTCGCCGGAAGTCGCCGGAAGTGGTCGTTGGTTGCCAGAGATGGTTGTTCAGCTGGCGCTGAAGATTAG

Protein sequence

MFDPFFTTFADGDGNNNFNIVLQELSRLLLDGNLFMTNIVPRVFIINNGSSFKNRIDFVSSSEAKTTIAASLASPEVAGSRRKWSLVARDGCSAGAED
Homology
BLAST of CaUC04G068340 vs. NCBI nr
Match: TYK03001.1 (uncharacterized protein E5676_scaffold46G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1  MFDPFFTTFADGDGNNNFNIVLQELSRLLL-DGNLFMTNIVPR 43
          MFDPFFT F+ GDG+ NFNI LQELSRL+L D +LF+T +VPR
Sbjct: 1  MFDPFFTIFSAGDGDYNFNIDLQELSRLILADDDLFLTILVPR 43

BLAST of CaUC04G068340 vs. NCBI nr
Match: XP_023515127.1 (uncharacterized protein LOC111779246 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1  MFDPFFTTFADGDGNNNFNIVLQELSRLLLDGNLFMTNIVPRV 44
          MFDPFFT F+  DGN N NI LQELS+++L+ +LF+T +VP V
Sbjct: 54 MFDPFFTIFSARDGNYNLNIDLQELSQIILEDDLFLTILVPSV 96

BLAST of CaUC04G068340 vs. NCBI nr
Match: XP_011658377.1 (uncharacterized protein LOC105435978 [Cucumis sativus] >KAE8646543.1 hypothetical protein Csa_005041 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-04
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  MFDPFFTTFADGDGNNNFNIVLQELSRLLL-DGNLFMTNIVPRVF 45
          MFDPFFT F+ GDG+ NF+I LQELSRL+L + +LF+T +VP  F
Sbjct: 54 MFDPFFTIFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAF 98

BLAST of CaUC04G068340 vs. NCBI nr
Match: XP_022964051.1 (uncharacterized protein LOC111464195 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-04
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1  MFDPFFTTFADGDGNNNFNIVLQELSRLLLDGNLFMTNIVPRV 44
          MFDPFFT F+  DGN N +I LQELS+++L+ +LF+T +VP V
Sbjct: 54 MFDPFFTIFSARDGNYNLDIDLQELSQIILEDDLFLTILVPSV 96

BLAST of CaUC04G068340 vs. NCBI nr
Match: KAG7026010.1 (hypothetical protein SDJN02_12508, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-04
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1  MFDPFFTTFADGDGNNNFNIVLQELSRLLLDGNLFMTNIVPRV 44
          MFDPFFT F+  DGN N +I LQELS+++L+ +LF+T +VP V
Sbjct: 54 MFDPFFTIFSARDGNYNLDIDLQELSQIILEDDLFLTILVPSV 96

BLAST of CaUC04G068340 vs. ExPASy TrEMBL
Match: A0A5D3BTF3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00960 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1  MFDPFFTTFADGDGNNNFNIVLQELSRLLL-DGNLFMTNIVPR 43
          MFDPFFT F+ GDG+ NFNI LQELSRL+L D +LF+T +VPR
Sbjct: 1  MFDPFFTIFSAGDGDYNFNIDLQELSRLILADDDLFLTILVPR 43

BLAST of CaUC04G068340 vs. ExPASy TrEMBL
Match: A0A0A0K7E6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002880 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1   MFDPFFTTFADGDGNNNFNIVLQELSRLLL-DGNLFMTNIVPRVF----IINNGSSF 53
           MFDPFFT F+ GDG+ NF+I LQELSRL+L + +LF+T +VP  F    +I++ S+F
Sbjct: 54  MFDPFFTIFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTF 110

BLAST of CaUC04G068340 vs. ExPASy TrEMBL
Match: A0A6J1HHS5 (uncharacterized protein LOC111464195 OS=Cucurbita moschata OX=3662 GN=LOC111464195 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1  MFDPFFTTFADGDGNNNFNIVLQELSRLLLDGNLFMTNIVPRV 44
          MFDPFFT F+  DGN N +I LQELS+++L+ +LF+T +VP V
Sbjct: 54 MFDPFFTIFSARDGNYNLDIDLQELSQIILEDDLFLTILVPSV 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK03001.12.1e-0569.77uncharacterized protein E5676_scaffold46G00960 [Cucumis melo var. makuwa][more]
XP_023515127.12.4e-0460.47uncharacterized protein LOC111779246 [Cucurbita pepo subsp. pepo][more]
XP_011658377.14.0e-0462.22uncharacterized protein LOC105435978 [Cucumis sativus] >KAE8646543.1 hypothetica... [more]
XP_022964051.19.0e-0458.14uncharacterized protein LOC111464195 [Cucurbita moschata][more]
KAG7026010.19.0e-0458.14hypothetical protein SDJN02_12508, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTF31.0e-0569.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K7E61.5e-0454.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002880 PE=4 SV=1[more]
A0A6J1HHS54.3e-0458.14uncharacterized protein LOC111464195 OS=Cucurbita moschata OX=3662 GN=LOC1114641... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G068340.1CaUC04G068340.1mRNA