CaUC04G068040 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G068040
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Ciama_Chr04: 4424960 .. 4426502 (-)
RNA-Seq Expression	CaUC04G068040
Synteny	CaUC04G068040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATTGTACATAAAGAAAAATATGTAGATCGACATTCATTGAACATCAAGAAAAGACCCAAATTTTGGGCTTAGTCCAAAATAACGTCATTTTGAGCTGGCTCTTCTTGATGAGCAAAAACCTTTGTCTTAAAATCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGCGCCGCCCTTCTTCCTTGTACCATCATCCGCCAAATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGATGGCACAATGCTCCACGTTCACCTCATCAGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGCCAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTATTCTCGTGGTTTTGGGGTTAATTAAGCGTTAAAGCTATTCAAAGAAATGTTGGGAGTTCGGTTTGAGCCTAGTTCCTCCACTTTTGTAAGCTTATTGTCAGGTTTTGCTGACCCAACTCATGGATATATCTTTCAGGAGCTTTTGGTACAGGTTGCATTACCAAGTTTCAACTTCATGATGACACGCCGGTGGCAAATTCTCTTATGCAAATGTATGTAAACTTTCGTCAAATTGATTCTGCTTGCTCTATTTTTTATGCAACCAGTGACAAGACAGTAATTTCTTGGACAATAATGCTTGGTGGTTACTTGAAAGTTGAGGCTATTGCCAAAGTATTTGACATTTTTAGTCAAATGAGGCAAAATAATGTTGTATTGGATAAATTCTTTTTTGTAGATATAATTTCCTCTTGTATACAACTAGGAAATTTGTTTTTAGCTTCTTCACTTTATTCCCTCCTCTTGAAAATTGGGCTGAATTATGAGGATCCTATTGGTCGTTTGCTTATTAGCATGTATTCAAAATGTGGAGACCTCTTGTCTGTTCGAGCCGTATTTGGTTTGTTATCTGAAAAAAGCATTAATTTCAAAAATGGTTTTAATATTGTTTACAGCTTCCAGAATTTGATATTGGGTTGGTTTATCAACTAATCGTCATTGGCATCAACACATCTCATATCCAAATTTCTTATTAATTCCACCTAATAGACCAAATGCACTGAGTATATGATTTGTATAATTTTCCACTCATCTTCATCTTCTTTCCTGCAGTATAATGTCATGCGGTAATGCGGGTAGAGATGTGGATAGATATATTAGTAATTACACCTATCATTTACAAGCTTGCATTCGAAAAGAACAACTCTAACTCCACTACAAACCTTGTCATTGGTTAGGTAGTGTTCTTTTCCTTCTTCCTTGTCAGCCAATCCTTTTCAAATACCTTATTTGAAGGGAGTGGAAAGTGCTTGTTGCAAGCCTTCTCCAAGCAAGCCTACTGTAAGCAGGGTATCCTATTCCCGTGGGACACAAGCC

mRNA sequence

ATGGTCATTACCCAAATTTTGGGCTTAGTCCAAAATAACGTCATTTTGAGCTGGCTCTTCTTGATGAGCAAAAACCTTTGTCTTAAAATCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGCGCCGCCCTTCTTCCTTGTACCATCATCCGCCAAATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGATGGCACAATGCTCCACGTTCACCTCATCAGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGCCAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTATTCTCGTGGTTTTGGGCTATTCAAAGAAATGTTGGGAGTTCGGTTTGAGCCTAGTTCCTCCACTTTTGTAAGCTTATTGTCAGGTTGCATTACCAAGTTTCAACTTCATGATGACACGCCGGTGGCAAATTCTCTTATGCAAATGTATGTAAACTTTCGTCAAATTGATTCTGCTTGCTCTATTTTTTATGCAACCAGTGACAAGACAGTAATTTCTTGGACAATAATGCTTGGTGGTTACTTGAAAGTTGAGGCTATTGCCAAAGTATTTGACATTTTTAGTCAAATGAGGCAAAATAATGTTGGAGTGGAAAGTGCTTGTTGCAAGCCTTCTCCAAGCAAGCCTACTGTAAGCAGGGTATCCTATTCCCGTGGGACACAAGCC

Coding sequence (CDS)

ATGGTCATTACCCAAATTTTGGGCTTAGTCCAAAATAACGTCATTTTGAGCTGGCTCTTCTTGATGAGCAAAAACCTTTGTCTTAAAATCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGCGCCGCCCTTCTTCCTTGTACCATCATCCGCCAAATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGATGGCACAATGCTCCACGTTCACCTCATCAGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGCCAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTATTCTCGTGGTTTTGGGCTATTCAAAGAAATGTTGGGAGTTCGGTTTGAGCCTAGTTCCTCCACTTTTGTAAGCTTATTGTCAGGTTGCATTACCAAGTTTCAACTTCATGATGACACGCCGGTGGCAAATTCTCTTATGCAAATGTATGTAAACTTTCGTCAAATTGATTCTGCTTGCTCTATTTTTTATGCAACCAGTGACAAGACAGTAATTTCTTGGACAATAATGCTTGGTGGTTACTTGAAAGTTGAGGCTATTGCCAAAGTATTTGACATTTTTAGTCAAATGAGGCAAAATAATGTTGGAGTGGAAAGTGCTTGTTGCAAGCCTTCTCCAAGCAAGCCTACTGTAAGCAGGGTATCCTATTCCCGTGGGACACAAGCC

Protein sequence

MVITQILGLVQNNVILSWLFLMSKNLCLKILFSFETHIVHLRLLHIRAALLPCTIIRQISPYRSSVVVAPIRPPFVEAVVHPLVVPLSFVRWSTMAQCSTFTSSVSGSNQTYLFKPHSSTCTPSAHFPTSRQLFDEMSTRSVVISWNSMIAAYSRGFGLFKEMLGVRFEPSSSTFVSLLSGCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISWTIMLGGYLKVEAIAKVFDIFSQMRQNNVGVESACCKPSPSKPTVSRVSYSRGTQA

Homology

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BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_038893873.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 195.7 bits (496), Expect = 5.5e-46
Identity = 107/157 (68.15%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 121 CTPSAHFPTSRQLFDEMSTRSVVISWNSMIAAYSRGFG------LFKEMLGVRFEPSSST 180
           C+  +   +SRQ+FDEMSTRS VISWNSMIAAYSR FG      LF+EMLGV FE +SST
Sbjct: 98  CSKCSDLASSRQMFDEMSTRS-VISWNSMIAAYSRDFGVNEALKLFREMLGVGFEANSST 157

Query: 181 FVSLLS-----------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYA 240
           FVSLLS                 GCITKFQL DDTPVANSLMQMYVNF QIDSACS+FY 
Sbjct: 158 FVSLLSGFADPTHGSLFQGRSVHGCITKFQLLDDTPVANSLMQMYVNFGQIDSACSVFYT 217

Query: 241 TSDKTVISWTIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
            SDKTVISWTIMLGGYL+  A+AKVF+IF+QMR+NNV
Sbjct: 218 ISDKTVISWTIMLGGYLRAGAVAKVFEIFNQMRKNNV 253

[Close]

BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_004137641.1 (pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 3.0e-44
Identity = 104/148 (70.27%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 130 SRQLFDEMSTRSVVISWNSMIAAYSRGF------GLFKEMLGVRFEPSSSTFVSLLS--- 189
           SRQ+FDE STRS VISWNSMIAAYSR F       LF+EMLG  FEP+SSTFVSLLS   
Sbjct: 107 SRQVFDETSTRS-VISWNSMIAAYSRSFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFA 166

Query: 190 --------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISW 249
                         GC+TKFQLHDDTPV NSL+QMYVNF QIDSACS+FYA S+KTVISW
Sbjct: 167 DPTHGSLFQGRLLHGCLTKFQLHDDTPVENSLVQMYVNFGQIDSACSVFYAISEKTVISW 226

Query: 250 TIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           TIMLGGYLK  A+AKVF+ FSQMRQNNV
Sbjct: 227 TIMLGGYLKAGAVAKVFETFSQMRQNNV 253

[Close]

BLAST of CaUC04G068040 vs. NCBI nr
Match: TYJ99083.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-42
Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 130 SRQLFDEMSTRSVVISWNSMIAAYSRGF------GLFKEMLGVRFEPSSSTFVSLLS--- 189
           SRQ+FDE STRSV+  WNSMIAAYSRGF       LF+EMLG  FEP+SSTFVSLLS   
Sbjct: 107 SRQVFDETSTRSVIF-WNSMIAAYSRGFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFA 166

Query: 190 --------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISW 249
                         G +TKFQ HDDTPV NSL+QMYVNF QIDSACS+FYA S+KTVISW
Sbjct: 167 DPTHGSLFQGRLLHGFMTKFQFHDDTPVQNSLVQMYVNFGQIDSACSVFYAISEKTVISW 226

Query: 250 TIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           TIMLGGYLK  A+AKVF+ FSQMRQNNV
Sbjct: 227 TIMLGGYLKAGAVAKVFETFSQMRQNNV 253

[Close]

BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_008446053.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-42
Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 130 SRQLFDEMSTRSVVISWNSMIAAYSRGF------GLFKEMLGVRFEPSSSTFVSLLS--- 189
           SRQ+FDE STRSV+  WNSMIAAYSRGF       LF+EMLG  FEP+SSTFVSLLS   
Sbjct: 107 SRQVFDETSTRSVIF-WNSMIAAYSRGFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFA 166

Query: 190 --------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISW 249
                         G +TKFQ HDDTPV NSL+QMYVNF QIDSACS+FYA S+KTVISW
Sbjct: 167 DPTHGSLFQGRLLHGFMTKFQFHDDTPVQNSLVQMYVNFGQIDSACSVFYAISEKTVISW 226

Query: 250 TIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           TIMLGGYLK  A+AKVF+ FSQMRQNNV
Sbjct: 227 TIMLGGYLKAGAVAKVFETFSQMRQNNV 253

[Close]

BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_022137264.1 (pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 2.9e-39
Identity = 98/149 (65.77%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 129 TSRQLFDEMSTRSVVISWNSMIAAYSR------GFGLFKEMLGVRFEPSSSTFVSLLS-- 188
           +SRQ+FDEMS RS VISWNSMIAAYSR      GF LF+EM G  FEP+SSTFVSLLS  
Sbjct: 105 SSRQVFDEMSMRS-VISWNSMIAAYSRAFRVNEGFKLFREMWGFGFEPNSSTFVSLLSGF 164

Query: 189 ---------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVIS 248
                          GC+TKF+L +DTPVANSLM+MYVNF QID+A S+FYA   KTVIS
Sbjct: 165 ANPVHGSLFQCLLIQGCLTKFRLQNDTPVANSLMKMYVNFGQIDAARSVFYAIGGKTVIS 224

Query: 249 WTIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           WTIMLGGYLK  A+A+VF IFSQMR NNV
Sbjct: 225 WTIMLGGYLKSGAVAEVFRIFSQMRLNNV 252

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BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.8e-11
Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 129 TSRQLFDEMSTRSVVISWNSMIAAY------SRGFGLFKEMLGVRFEPSSSTFVSLLSGC 188
           T+RQLFD M  R+VV SWNSMI AY           +F++ML    +P+  + +  L  C
Sbjct: 289 TARQLFDGMLERNVV-SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC 348

Query: 189 I---------------TKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISWT 248
                            +  L  +  V NSL+ MY   +++D+A S+F     +T++SW 
Sbjct: 349 ADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWN 408

Query: 249 IMLGGYLKVEAIAKVFDIFSQMRQNNV 255
            M+ G+ +        + FSQMR   V
Sbjct: 409 AMILGFAQNGRPIDALNYFSQMRSRTV 434

[Close]

BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10
Identity = 44/160 (27.50%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 111 TYLFKPHSSTCTPSAHFPTSRQLFDEMSTRSVVISWNSMIAAYS------RGFGLFKEML 170
           T L K ++S      +   +++LFDE+  + VV SWN+MI+ Y+          LFK+M+
Sbjct: 204 TALIKGYAS----RGYIENAQKLFDEIPVKDVV-SWNAMISGYAETGNYKEALELFKDMM 263

Query: 171 GVRFEPSSSTFVSLLSGCITK------FQLH---------DDTPVANSLMQMYVNFRQID 230
                P  ST V+++S C          Q+H          +  + N+L+ +Y    +++
Sbjct: 264 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 323

Query: 231 SACSIFYATSDKTVISWTIMLGGYLKVEAIAKVFDIFSQM 250
           +AC +F     K VISW  ++GGY  +    +   +F +M
Sbjct: 324 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM 358

[Close]

BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9STS9 (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-10
Identity = 45/141 (31.91%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 133 LFDEMSTRSVVISWNSMIAAYSR------GFGLFKEMLGVRFEPSSSTFVSLLSGC---- 192
           LF+ MS R VV SW S+I AY R          F +M   +  P+  TF S+ S C    
Sbjct: 266 LFENMSERDVV-SWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLS 325

Query: 193 -----------ITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISWTIMLG 252
                      +    L+D   V+NS+M+MY     + SA  +F     + +ISW+ ++G
Sbjct: 326 RLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIG 385

[Close]

BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9SII7 (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E77 PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-09
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 129 TSRQLFDEMSTRSVVISWNSMIAAYSR------GFGLFKEML-GVRFEPSSSTFVSLLSG 188
           ++R+LFDEMS R  VISW+ +I +Y +      G  LFKEM+   + EP   T  S+L  
Sbjct: 198 SARKLFDEMSERD-VISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKA 257

Query: 189 C-----------ITKFQLH-----DDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVIS 248
           C           +  F +       D  V NSL+ MY     +DSA  +F  T+ + ++S
Sbjct: 258 CTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVS 317

Query: 249 WTIMLGGYLKVEAIAKVFDIFSQMRQNNVGVE 258
           W  +L G++  +   +  ++F  M Q  V V+
Sbjct: 318 WNSILAGFVHNQRYDEALEMFHLMVQEAVEVD 348

[Close]

BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-09
Identity = 42/144 (29.17%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 124 SAHFPTSRQLFDEMSTRSVVISWNSMIAAY--SRGFGLFKEMLGVRFEPSSSTFVSLLS- 183
           +  F  +R+LFDEM  R +V SWN MI  Y  +R  G  +E+  +  E    ++ ++LS 
Sbjct: 108 NGEFELARKLFDEMPERDLV-SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSG 167

Query: 184 ----GCITKFQ-LHDDTPVA-----NSLMQMYVNFRQIDSACSIFYATSDKTVISWTIML 243
               GC+   + + D  P       N+L+  YV   +++ AC +F +  +  ++SW  +L
Sbjct: 168 YAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLL 227

Query: 244 GGYLKVEAIAKVFDIFSQMRQNNV 255
           GG++K + I +    F  M   +V
Sbjct: 228 GGFVKKKKIVEARQFFDSMNVRDV 250

[Close]

BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A0A0LT91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-44
Identity = 104/148 (70.27%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 130 SRQLFDEMSTRSVVISWNSMIAAYSRGF------GLFKEMLGVRFEPSSSTFVSLLS--- 189
           SRQ+FDE STRS VISWNSMIAAYSR F       LF+EMLG  FEP+SSTFVSLLS   
Sbjct: 107 SRQVFDETSTRS-VISWNSMIAAYSRSFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFA 166

Query: 190 --------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISW 249
                         GC+TKFQLHDDTPV NSL+QMYVNF QIDSACS+FYA S+KTVISW
Sbjct: 167 DPTHGSLFQGRLLHGCLTKFQLHDDTPVENSLVQMYVNFGQIDSACSVFYAISEKTVISW 226

Query: 250 TIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           TIMLGGYLK  A+AKVF+ FSQMRQNNV
Sbjct: 227 TIMLGGYLKAGAVAKVFETFSQMRQNNV 253

[Close]

BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A5D3BIG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002870 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.0e-43
Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 130 SRQLFDEMSTRSVVISWNSMIAAYSRGF------GLFKEMLGVRFEPSSSTFVSLLS--- 189
           SRQ+FDE STRSV+  WNSMIAAYSRGF       LF+EMLG  FEP+SSTFVSLLS   
Sbjct: 107 SRQVFDETSTRSVIF-WNSMIAAYSRGFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFA 166

Query: 190 --------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISW 249
                         G +TKFQ HDDTPV NSL+QMYVNF QIDSACS+FYA S+KTVISW
Sbjct: 167 DPTHGSLFQGRLLHGFMTKFQFHDDTPVQNSLVQMYVNFGQIDSACSVFYAISEKTVISW 226

Query: 250 TIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           TIMLGGYLK  A+AKVF+ FSQMRQNNV
Sbjct: 227 TIMLGGYLKAGAVAKVFETFSQMRQNNV 253

[Close]

BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A1S3BDP0 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488899 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.0e-43
Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 130 SRQLFDEMSTRSVVISWNSMIAAYSRGF------GLFKEMLGVRFEPSSSTFVSLLS--- 189
           SRQ+FDE STRSV+  WNSMIAAYSRGF       LF+EMLG  FEP+SSTFVSLLS   
Sbjct: 107 SRQVFDETSTRSVIF-WNSMIAAYSRGFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFA 166

Query: 190 --------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISW 249
                         G +TKFQ HDDTPV NSL+QMYVNF QIDSACS+FYA S+KTVISW
Sbjct: 167 DPTHGSLFQGRLLHGFMTKFQFHDDTPVQNSLVQMYVNFGQIDSACSVFYAISEKTVISW 226

Query: 250 TIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           TIMLGGYLK  A+AKVF+ FSQMRQNNV
Sbjct: 227 TIMLGGYLKAGAVAKVFETFSQMRQNNV 253

[Close]

BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A6J1C6R4 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111008767 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-39
Identity = 98/149 (65.77%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 129 TSRQLFDEMSTRSVVISWNSMIAAYSR------GFGLFKEMLGVRFEPSSSTFVSLLS-- 188
           +SRQ+FDEMS RS VISWNSMIAAYSR      GF LF+EM G  FEP+SSTFVSLLS  
Sbjct: 105 SSRQVFDEMSMRS-VISWNSMIAAYSRAFRVNEGFKLFREMWGFGFEPNSSTFVSLLSGF 164

Query: 189 ---------------GCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVIS 248
                          GC+TKF+L +DTPVANSLM+MYVNF QID+A S+FYA   KTVIS
Sbjct: 165 ANPVHGSLFQCLLIQGCLTKFRLQNDTPVANSLMKMYVNFGQIDAARSVFYAIGGKTVIS 224

Query: 249 WTIMLGGYLKVEAIAKVFDIFSQMRQNNV 255
           WTIMLGGYLK  A+A+VF IFSQMR NNV
Sbjct: 225 WTIMLGGYLKSGAVAEVFRIFSQMRLNNV 252

[Close]

BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A200QK45 (Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_645g99 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-24
Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 125 AHFPTSRQLFDEMSTRSVVISWNSMIAAYSR------GFGLFKEMLGVRFEPSSSTFVSL 184
           ++  +SR LFDEM  RSVV SWNSMI+AY +       FGL K+M  +  EPSSST VS+
Sbjct: 59  SNLSSSRHLFDEMPIRSVV-SWNSMISAYCKDFQIDESFGLLKQMRFLDLEPSSSTLVSI 118

Query: 185 LSGCI-----------------TKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDK 244
           +SGC                   K  L  D  ++NS+M MY+ F QID+A ++FY+ ++K
Sbjct: 119 VSGCSGSGFGALWHGLSIHCYGIKLGLTSDLLLSNSIMSMYIQFDQIDAARALFYSMAEK 178

Query: 245 TVISWTIMLGGYLKVEAIAKVFDIFSQMRQNNVGVES 259
           + ISWT ++GG++K+  + + F++F+QMRQ  + ++S
Sbjct: 179 STISWTAIIGGFIKIGDVGEAFNLFNQMRQEQISLDS 214

[Close]

BLAST of CaUC04G068040 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-12
Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 129 TSRQLFDEMSTRSVVISWNSMIAAY------SRGFGLFKEMLGVRFEPSSSTFVSLLSGC 188
           T+RQLFD M  R+VV SWNSMI AY           +F++ML    +P+  + +  L  C
Sbjct: 289 TARQLFDGMLERNVV-SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC 348

Query: 189 I---------------TKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISWT 248
                            +  L  +  V NSL+ MY   +++D+A S+F     +T++SW 
Sbjct: 349 ADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWN 408

Query: 249 IMLGGYLKVEAIAKVFDIFSQMRQNNV 255
            M+ G+ +        + FSQMR   V
Sbjct: 409 AMILGFAQNGRPIDALNYFSQMRSRTV 434

[Close]

BLAST of CaUC04G068040 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-11
Identity = 44/160 (27.50%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 111 TYLFKPHSSTCTPSAHFPTSRQLFDEMSTRSVVISWNSMIAAYS------RGFGLFKEML 170
           T L K ++S      +   +++LFDE+  + VV SWN+MI+ Y+          LFK+M+
Sbjct: 204 TALIKGYAS----RGYIENAQKLFDEIPVKDVV-SWNAMISGYAETGNYKEALELFKDMM 263

Query: 171 GVRFEPSSSTFVSLLSGCITK------FQLH---------DDTPVANSLMQMYVNFRQID 230
                P  ST V+++S C          Q+H          +  + N+L+ +Y    +++
Sbjct: 264 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 323

Query: 231 SACSIFYATSDKTVISWTIMLGGYLKVEAIAKVFDIFSQM 250
           +AC +F     K VISW  ++GGY  +    +   +F +M
Sbjct: 324 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM 358

[Close]

BLAST of CaUC04G068040 vs. TAIR 10
Match: AT3G47840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-11
Identity = 45/141 (31.91%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 133 LFDEMSTRSVVISWNSMIAAYSR------GFGLFKEMLGVRFEPSSSTFVSLLSGC---- 192
           LF+ MS R VV SW S+I AY R          F +M   +  P+  TF S+ S C    
Sbjct: 266 LFENMSERDVV-SWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLS 325

Query: 193 -----------ITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISWTIMLG 252
                      +    L+D   V+NS+M+MY     + SA  +F     + +ISW+ ++G
Sbjct: 326 RLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIG 385

[Close]

BLAST of CaUC04G068040 vs. TAIR 10
Match: AT2G17210.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-10
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 129 TSRQLFDEMSTRSVVISWNSMIAAYSR------GFGLFKEML-GVRFEPSSSTFVSLLSG 188
           ++R+LFDEMS R  VISW+ +I +Y +      G  LFKEM+   + EP   T  S+L  
Sbjct: 177 SARKLFDEMSERD-VISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKA 236

Query: 189 C-----------ITKFQLH-----DDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVIS 248
           C           +  F +       D  V NSL+ MY     +DSA  +F  T+ + ++S
Sbjct: 237 CTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVS 296

Query: 249 WTIMLGGYLKVEAIAKVFDIFSQMRQNNVGVE 258
           W  +L G++  +   +  ++F  M Q  V V+
Sbjct: 297 WNSILAGFVHNQRYDEALEMFHLMVQEAVEVD 327

[Close]

BLAST of CaUC04G068040 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-10
Identity = 42/144 (29.17%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 124 SAHFPTSRQLFDEMSTRSVVISWNSMIAAY--SRGFGLFKEMLGVRFEPSSSTFVSLLS- 183
           +  F  +R+LFDEM  R +V SWN MI  Y  +R  G  +E+  +  E    ++ ++LS 
Sbjct: 108 NGEFELARKLFDEMPERDLV-SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSG 167

Query: 184 ----GCITKFQ-LHDDTPVA-----NSLMQMYVNFRQIDSACSIFYATSDKTVISWTIML 243
               GC+   + + D  P       N+L+  YV   +++ AC +F +  +  ++SW  +L
Sbjct: 168 YAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLL 227

Query: 244 GGYLKVEAIAKVFDIFSQMRQNNV 255
           GG++K + I +    F  M   +V
Sbjct: 228 GGFVKKKKIVEARQFFDSMNVRDV 250

The following BLAST results are available for this feature:

BLAST of CaUC04G068040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893873.1	5.5e-46	68.15	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloropla...	[more]
XP_004137641.1	3.0e-44	70.27	pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]	[more]
TYJ99083.1	1.6e-42	68.24	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008446053.1	1.6e-42	68.24	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-...	[more]
XP_022137264.1	2.9e-39	65.77	pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]	[more]

BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E6Q1	7.8e-11	31.29	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
Q9LN01	1.7e-10	27.50	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9STS9	3.0e-10	31.91	Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis th...	[more]
Q9SII7	1.5e-09	31.58	Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana OX...	[more]
Q9SY02	3.3e-09	29.17	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]

BLAST of CaUC04G068040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT91	1.5e-44	70.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1	[more]
A0A5D3BIG9	8.0e-43	68.24	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BDP0	8.0e-43	68.24	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc...	[more]
A0A6J1C6R4	1.4e-39	65.77	pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charanti...	[more]
A0A200QK45	4.9e-24	41.40	Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_645g99 PE=4 SV=1	[more]

BLAST of CaUC04G068040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11290.1	5.5e-12	31.29	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G08070.1	1.2e-11	27.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G47840.1	2.1e-11	31.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G17210.1	1.0e-10	31.58	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G02750.1	2.3e-10	29.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 224..254 e-value: 0.0048 score: 17.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 119..186 e-value: 1.2E-8 score: 36.5 coord: 187..267 e-value: 5.2E-9 score: 37.7
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 125..257
None	No IPR available	PANTHER	PTHR24015:SF1934	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 125..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G068040.1	CaUC04G068040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding