
CaUC04G068040 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCATTGTACATAAAGAAAAATATGTAGATCGACATTCATTGAACATCAAGAAAAGACCCAAATTTTGGGCTTAGTCCAAAATAACGTCATTTTGAGCTGGCTCTTCTTGATGAGCAAAAACCTTTGTCTTAAAATCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGCGCCGCCCTTCTTCCTTGTACCATCATCCGCCAAATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGATGGCACAATGCTCCACGTTCACCTCATCAGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGCCAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTATTCTCGTGGTTTTGGGGTTAATTAAGCGTTAAAGCTATTCAAAGAAATGTTGGGAGTTCGGTTTGAGCCTAGTTCCTCCACTTTTGTAAGCTTATTGTCAGGTTTTGCTGACCCAACTCATGGATATATCTTTCAGGAGCTTTTGGTACAGGTTGCATTACCAAGTTTCAACTTCATGATGACACGCCGGTGGCAAATTCTCTTATGCAAATGTATGTAAACTTTCGTCAAATTGATTCTGCTTGCTCTATTTTTTATGCAACCAGTGACAAGACAGTAATTTCTTGGACAATAATGCTTGGTGGTTACTTGAAAGTTGAGGCTATTGCCAAAGTATTTGACATTTTTAGTCAAATGAGGCAAAATAATGTTGTATTGGATAAATTCTTTTTTGTAGATATAATTTCCTCTTGTATACAACTAGGAAATTTGTTTTTAGCTTCTTCACTTTATTCCCTCCTCTTGAAAATTGGGCTGAATTATGAGGATCCTATTGGTCGTTTGCTTATTAGCATGTATTCAAAATGTGGAGACCTCTTGTCTGTTCGAGCCGTATTTGGTTTGTTATCTGAAAAAAGCATTAATTTCAAAAATGGTTTTAATATTGTTTACAGCTTCCAGAATTTGATATTGGGTTGGTTTATCAACTAATCGTCATTGGCATCAACACATCTCATATCCAAATTTCTTATTAATTCCACCTAATAGACCAAATGCACTGAGTATATGATTTGTATAATTTTCCACTCATCTTCATCTTCTTTCCTGCAGTATAATGTCATGCGGTAATGCGGGTAGAGATGTGGATAGATATATTAGTAATTACACCTATCATTTACAAGCTTGCATTCGAAAAGAACAACTCTAACTCCACTACAAACCTTGTCATTGGTTAGGTAGTGTTCTTTTCCTTCTTCCTTGTCAGCCAATCCTTTTCAAATACCTTATTTGAAGGGAGTGGAAAGTGCTTGTTGCAAGCCTTCTCCAAGCAAGCCTACTGTAAGCAGGGTATCCTATTCCCGTGGGACACAAGCC ATGGTCATTACCCAAATTTTGGGCTTAGTCCAAAATAACGTCATTTTGAGCTGGCTCTTCTTGATGAGCAAAAACCTTTGTCTTAAAATCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGCGCCGCCCTTCTTCCTTGTACCATCATCCGCCAAATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGATGGCACAATGCTCCACGTTCACCTCATCAGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGCCAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTATTCTCGTGGTTTTGGGCTATTCAAAGAAATGTTGGGAGTTCGGTTTGAGCCTAGTTCCTCCACTTTTGTAAGCTTATTGTCAGGTTGCATTACCAAGTTTCAACTTCATGATGACACGCCGGTGGCAAATTCTCTTATGCAAATGTATGTAAACTTTCGTCAAATTGATTCTGCTTGCTCTATTTTTTATGCAACCAGTGACAAGACAGTAATTTCTTGGACAATAATGCTTGGTGGTTACTTGAAAGTTGAGGCTATTGCCAAAGTATTTGACATTTTTAGTCAAATGAGGCAAAATAATGTTGGAGTGGAAAGTGCTTGTTGCAAGCCTTCTCCAAGCAAGCCTACTGTAAGCAGGGTATCCTATTCCCGTGGGACACAAGCC ATGGTCATTACCCAAATTTTGGGCTTAGTCCAAAATAACGTCATTTTGAGCTGGCTCTTCTTGATGAGCAAAAACCTTTGTCTTAAAATCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGCGCCGCCCTTCTTCCTTGTACCATCATCCGCCAAATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGATGGCACAATGCTCCACGTTCACCTCATCAGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGCCAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTATTCTCGTGGTTTTGGGCTATTCAAAGAAATGTTGGGAGTTCGGTTTGAGCCTAGTTCCTCCACTTTTGTAAGCTTATTGTCAGGTTGCATTACCAAGTTTCAACTTCATGATGACACGCCGGTGGCAAATTCTCTTATGCAAATGTATGTAAACTTTCGTCAAATTGATTCTGCTTGCTCTATTTTTTATGCAACCAGTGACAAGACAGTAATTTCTTGGACAATAATGCTTGGTGGTTACTTGAAAGTTGAGGCTATTGCCAAAGTATTTGACATTTTTAGTCAAATGAGGCAAAATAATGTTGGAGTGGAAAGTGCTTGTTGCAAGCCTTCTCCAAGCAAGCCTACTGTAAGCAGGGTATCCTATTCCCGTGGGACACAAGCC MVITQILGLVQNNVILSWLFLMSKNLCLKILFSFETHIVHLRLLHIRAALLPCTIIRQISPYRSSVVVAPIRPPFVEAVVHPLVVPLSFVRWSTMAQCSTFTSSVSGSNQTYLFKPHSSTCTPSAHFPTSRQLFDEMSTRSVVISWNSMIAAYSRGFGLFKEMLGVRFEPSSSTFVSLLSGCITKFQLHDDTPVANSLMQMYVNFRQIDSACSIFYATSDKTVISWTIMLGGYLKVEAIAKVFDIFSQMRQNNVGVESACCKPSPSKPTVSRVSYSRGTQA Homology
BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_038893873.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 195.7 bits (496), Expect = 5.5e-46 Identity = 107/157 (68.15%), Postives = 119/157 (75.80%), Query Frame = 0
BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_004137641.1 (pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]) HSP 1 Score: 189.9 bits (481), Expect = 3.0e-44 Identity = 104/148 (70.27%), Postives = 113/148 (76.35%), Query Frame = 0
BLAST of CaUC04G068040 vs. NCBI nr
Match: TYJ99083.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 184.1 bits (466), Expect = 1.6e-42 Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0
BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_008446053.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo]) HSP 1 Score: 184.1 bits (466), Expect = 1.6e-42 Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0
BLAST of CaUC04G068040 vs. NCBI nr
Match: XP_022137264.1 (pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]) HSP 1 Score: 173.3 bits (438), Expect = 2.9e-39 Identity = 98/149 (65.77%), Postives = 110/149 (73.83%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 7.8e-11 Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10 Identity = 44/160 (27.50%), Postives = 77/160 (48.12%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9STS9 (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 3.0e-10 Identity = 45/141 (31.91%), Postives = 66/141 (46.81%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9SII7 (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E77 PE=3 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 1.5e-09 Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 3.3e-09 Identity = 42/144 (29.17%), Postives = 73/144 (50.69%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A0A0LT91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 1.5e-44 Identity = 104/148 (70.27%), Postives = 113/148 (76.35%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A5D3BIG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002870 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 8.0e-43 Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A1S3BDP0 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488899 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 8.0e-43 Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A6J1C6R4 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111008767 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.4e-39 Identity = 98/149 (65.77%), Postives = 110/149 (73.83%), Query Frame = 0
BLAST of CaUC04G068040 vs. ExPASy TrEMBL
Match: A0A200QK45 (Pentatricopeptide repeat OS=Macleaya cordata OX=56857 GN=BVC80_645g99 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 4.9e-24 Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 0
BLAST of CaUC04G068040 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 69.3 bits (168), Expect = 5.5e-12 Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0
BLAST of CaUC04G068040 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-11 Identity = 44/160 (27.50%), Postives = 77/160 (48.12%), Query Frame = 0
BLAST of CaUC04G068040 vs. TAIR 10
Match: AT3G47840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 67.4 bits (163), Expect = 2.1e-11 Identity = 45/141 (31.91%), Postives = 66/141 (46.81%), Query Frame = 0
BLAST of CaUC04G068040 vs. TAIR 10
Match: AT2G17210.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 65.1 bits (157), Expect = 1.0e-10 Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 0
BLAST of CaUC04G068040 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 2.3e-10 Identity = 42/144 (29.17%), Postives = 73/144 (50.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|