CaUC04G067940 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G067940
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Gag/pol protein
Location	Ciama_Chr04: 4103652 .. 4104017 (+)
RNA-Seq Expression	CaUC04G067940
Synteny	CaUC04G067940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTACAGGATACTCAGACTCTGATTTTCAAACTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTGTTCACTCTTAACGGCGGGGCTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCAGGATATGTAGCTGCTTGTGAAGCTACTAAGGAGGTCGTCTGGCTTAGGAAGTTTTTTACAGACCTGGAAATTATTCCTAACATATCAATGCCCATCACTCTTTATTGTGATAATAGTGGTGTTATGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA

mRNA sequence

ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTACAGGATACTCAGACTCTGATTTTCAAACTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTGTTCACTCTTAACGGCGGGGCTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCAGGATATGTAGCTGCTTGTGAAGCTACTAAGGAGGTCGTCTGGCTTAGGAAGTTTTTTACAGACCTGGAAATTATTCCTAACATATCAATGCCCATCACTCTTTATTGTGATAATAGTGGTGTTATGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA

Coding sequence (CDS)

ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTACAGGATACTCAGACTCTGATTTTCAAACTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTGTTCACTCTTAACGGCGGGGCTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCAGGATATGTAGCTGCTTGTGAAGCTACTAAGGAGGTCGTCTGGCTTAGGAAGTTTTTTACAGACCTGGAAATTATTCCTAACATATCAATGCCCATCACTCTTTATTGTGATAATAGTGGTGTTATGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA

Protein sequence

MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILRASII

Homology

[Close]

BLAST of CaUC04G067940 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.8e-47
Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLILTGY+DSDFQTDKDSRKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 131 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 190

Query: 61  VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
           VAACEA KE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 191 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 247

[Close]

BLAST of CaUC04G067940 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.8e-47
Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1    MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLILTGY+DSDFQTDKDSRKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 1066 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 1125

Query: 61   VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 1126 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1182

[Close]

BLAST of CaUC04G067940 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.8e-47
Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1    MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLILTGY+DSDFQTDKDSRKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 940  MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 999

Query: 61   VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 1000 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1056

[Close]

BLAST of CaUC04G067940 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLILTGY+DSDFQTDKD RKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of CaUC04G067940 vs. NCBI nr
Match: TYK17670.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLILTGY+DSDFQTDKD RKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of CaUC04G067940 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.4e-19
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2    LVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGYV 61
            L FG  D IL GY+D+D   D D+RKS+ G +FT +GGA+ WQS  Q C+A ST EA Y+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 62   AACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESI 116
            AA E  KE++WL++F  +L +         +YCD+   +  SK    H   + I
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHI 1276

[Close]

BLAST of CaUC04G067940 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-11
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 11  LTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGYVAACEATKEV 70
           L GYSD+D+  D +SR+ST G +F LNGG V W+S KQ  +A S+ E  Y+A  EAT+E 
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 71  VWL 74
           VWL
Sbjct: 131 VWL 133

[Close]

BLAST of CaUC04G067940 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-10
Identity = 35/106 (33.02%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 11   LTGYSDSDFQTDKDSRKSTLGSVFTL-NGGAVVWQSIKQGCIADSTMEAGYVAACEATKE 70
            + GY DSD+   +  RKST G +F + +   + W + +Q  +A S+ EA Y+A  EA +E
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   VVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESI 116
             +WL+   T + I   +  PI +Y DN G ++ +  P  H   + I
Sbjct: 1308 ALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHI 1351

[Close]

BLAST of CaUC04G067940 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1    MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLILTGY+DSDFQTDKDSRKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 1066 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 1125

Query: 61   VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 1126 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1182

[Close]

BLAST of CaUC04G067940 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1    MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
            MLV+GAKDLILTGY+DSDFQTDKDSRKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 940  MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 999

Query: 61   VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
            VAACEA KE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 1000 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 1056

[Close]

BLAST of CaUC04G067940 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLILTGY+DSDFQTDKDSRKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 131 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 190

Query: 61  VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
           VAACEA KE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 191 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 247

[Close]

BLAST of CaUC04G067940 vs. ExPASy TrEMBL
Match: A0A5D3D214 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14220G00010 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLILTGY+DSDFQTDKD RKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of CaUC04G067940 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MLVFGAKDLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGY 60
           MLV+GAKDLILTGY+DSDFQTDKD RKST GSVFTLNGGAVVW+SIKQGCIADSTMEA Y
Sbjct: 1   MLVYGAKDLILTGYTDSDFQTDKDFRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 60

Query: 61  VAACEATKEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESILR 118
           V ACEATKE VWLRKF  DLE++PN+++PITLYCDNSG +ANSKEP+SH   + I R
Sbjct: 61  VIACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIER 117

[Close]

BLAST of CaUC04G067940 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-12
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 8   DLILTGYSDSDFQTDKDSRKSTLGSVFTLNGGAVVWQSIKQGCIADSTMEAGYVAACEAT 67
           ++ L  +SD+ FQ+ KD+R+ST G    L    + W+S KQ  ++ S+ EA Y A   AT
Sbjct: 439 EMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFAT 498

Query: 68  KEVVWLRKFFTDLEIIPNISMPITLYCDNSGVMANSKEPKSHTNVESI 116
            E++WL +FF +L++   +S P  L+CDN+  +  +     H   + I
Sbjct: 499 DEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHI 544

The following BLAST results are available for this feature:

BLAST of CaUC04G067940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042496.1	4.8e-47	80.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	4.8e-47	80.34	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	4.8e-47	80.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0043328.1	2.4e-46	79.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK17670.1	2.4e-46	79.49	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CaUC04G067940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.4e-19	42.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	4.4e-11	53.97	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	3.7e-10	33.02	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of CaUC04G067940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	2.3e-47	80.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	2.3e-47	80.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TKM4	2.3e-47	80.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5D3D214	1.1e-46	79.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14220G00...	[more]
A0A5A7TKJ4	1.1e-46	79.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023...	[more]

BLAST of CaUC04G067940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.1e-12	34.26	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 35..101
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 35..101
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..109 e-value: 1.68691E-42 score: 134.518

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G067940.1	CaUC04G067940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding