CaUC03G064100 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G064100
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description(1->3)-beta-glucan endohydrolase
LocationCiama_Chr03: 29437881 .. 29438271 (+)
RNA-Seq ExpressionCaUC03G064100
SyntenyCaUC03G064100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGAATCCTCCAGTTCTTGTGGGAACAAGGGTCACCATTGATGCTTAGCTTACATCCATATAAAACATATGTTTACAGTAGCAATATAAGTTTGGGTTATGCAACATTCACCGAAGAAAGAAATCTGAGATGTGGCCATATATTGCAGTTGGGGAAACTGGGTGCCCAACTTGTGGGAATTACAATTCTACAACATCACTTGCAGCTACATACAACAAAAATTTTAAGAGTCATATTTAATTAGCTCTAGCAAGGGGACACCAATGAACCCAAATATTTATATCCAGAGTATATTCAACGAGAATGAAGAGCCTGAAGGGGAGTCACGGTGTTATGGGATGTTCAATGTTGATTCCACCACACCTATTTATCCGCCTGTGTTTTAA

mRNA sequence

ATGAGAGGAATCCTCCAGTTCTTGTGGGAACAAGGGTCACCATTGATGCTTAGCTTACATCCATATAAAACATATGTTTACAGTAGCAATATAAGTTTGGGTTATGCAACATTCACCGAAGAAAGAAATCTGAGATGTGGCCATATATTGCAGTTGGGGAAACTGGGTGCCCAACTTGTGGGAATTACAATTCTACAACATCACTTGCAGCTACATACAACAAAAATTTTAAGAGGGACACCAATGAACCCAAATATTTATATCCAGAGTATATTCAACGAGAATGAAGAGCCTGAAGGGGAGTCACGGTGTTATGGGATGTTCAATGTTGATTCCACCACACCTATTTATCCGCCTGTGTTTTAA

Coding sequence (CDS)

ATGAGAGGAATCCTCCAGTTCTTGTGGGAACAAGGGTCACCATTGATGCTTAGCTTACATCCATATAAAACATATGTTTACAGTAGCAATATAAGTTTGGGTTATGCAACATTCACCGAAGAAAGAAATCTGAGATGTGGCCATATATTGCAGTTGGGGAAACTGGGTGCCCAACTTGTGGGAATTACAATTCTACAACATCACTTGCAGCTACATACAACAAAAATTTTAAGAGGGACACCAATGAACCCAAATATTTATATCCAGAGTATATTCAACGAGAATGAAGAGCCTGAAGGGGAGTCACGGTGTTATGGGATGTTCAATGTTGATTCCACCACACCTATTTATCCGCCTGTGTTTTAA

Protein sequence

MRGILQFLWEQGSPLMLSLHPYKTYVYSSNISLGYATFTEERNLRCGHILQLGKLGAQLVGITILQHHLQLHTTKILRGTPMNPNIYIQSIFNENEEPEGESRCYGMFNVDSTTPIYPPVF
Homology
BLAST of CaUC03G064100 vs. NCBI nr
Match: XP_038880685.1 (probable glucan endo-1,3-beta-glucosidase BG5 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-26
Identity = 80/166 (48.19%), Postives = 94/166 (56.63%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSSNISLGYATFTEER-NLRCGHI---------- 60
           MRGIL FLWEQGSPLM+SL+P+KTY YS N+SLGYATF EE  ++R G +          
Sbjct: 177 MRGILHFLWEQGSPLMVSLYPHKTYFYSGNMSLGYATFAEENFSIRDGDLSYNNLFDEMM 236

Query: 61  ----------------LQLGKLGAQLVGITILQHHLQLHTTKIL--------------RG 120
                           + +G+ G    G      HL + TT I               +G
Sbjct: 237 DAFYAAIDKEDVGDVAIAVGETGWPTCG------HLNITTTSIAATYNRNFKNHITSGKG 296

Query: 121 TPMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           TPM  NIYIQ    SIFNENEEPEGES+CYGMF+VDS TPIY PVF
Sbjct: 297 TPMKSNIYIQGFIKSIFNENEEPEGESKCYGMFHVDS-TPIYSPVF 335

BLAST of CaUC03G064100 vs. NCBI nr
Match: TYK10032.1 (lichenase-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-21
Identity = 76/165 (46.06%), Postives = 91/165 (55.15%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSSNISLGYATFTEE---------------RNL- 60
           MRGILQFLW QGSPLMLSL+PY+ Y Y +NISLGYATFT +                NL 
Sbjct: 180 MRGILQFLWGQGSPLMLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLF 239

Query: 61  --------------RCGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGT 120
                           GH+ + +G+ G    G               + + H +   +GT
Sbjct: 240 DEVVDAFYAAIDKASVGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGT 299

Query: 121 PMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           PM PNIYI+    S+FNENE+PEGESR YGMFNVDS TPIY PVF
Sbjct: 300 PMKPNIYIEGFIKSLFNENEKPEGESRFYGMFNVDS-TPIYSPVF 341

BLAST of CaUC03G064100 vs. NCBI nr
Match: KAA0055781.1 (lichenase-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-21
Identity = 76/165 (46.06%), Postives = 91/165 (55.15%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSSNISLGYATFTEE---------------RNL- 60
           MRGILQFLW QGSPLMLSL+PY+ Y Y +NISLGYATFT +                NL 
Sbjct: 180 MRGILQFLWGQGSPLMLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLF 239

Query: 61  --------------RCGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGT 120
                           GH+ + +G+ G    G               + + H +   +GT
Sbjct: 240 DEVVDAFYAAIDKASVGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGT 299

Query: 121 PMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           PM PNIYI+    S+FNENE+PEGESR YGMFNVDS TPIY PVF
Sbjct: 300 PMKPNIYIEGFIKSLFNENEKPEGESRFYGMFNVDS-TPIYSPVF 341

BLAST of CaUC03G064100 vs. NCBI nr
Match: XP_004153772.3 (probable glucan endo-1,3-beta-glucosidase BG4 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 76/166 (45.78%), Postives = 92/166 (55.42%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYS--SNISLGYATFTEER----------NLRCGH 60
           M+GILQFLW QGSPLMLSL+PY  Y Y+  +NISLGYATFT +           NL   +
Sbjct: 164 MKGILQFLWGQGSPLMLSLYPYDAYAYTGYTNISLGYATFTSQTEQNPPIRIDGNLYYKN 223

Query: 61  ILQ---------LGKLGAQLVGITI------------------LQHHLQL--HTTKILRG 120
           +           + K  A  V I I                  L ++L    H T   +G
Sbjct: 224 VFDEMVDAFHAAIDKACAGDVAIAIGETGWPTEGNYGAGPSLALTYNLNFKNHITS-GKG 283

Query: 121 TPMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           TPM PNIYI+    S+FNENE+PEGES+ YGMF+VDS TPIYP VF
Sbjct: 284 TPMKPNIYIEGFIRSLFNENEKPEGESQFYGMFHVDS-TPIYPSVF 327

BLAST of CaUC03G064100 vs. NCBI nr
Match: KAE8652284.1 (hypothetical protein Csa_021876 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 76/166 (45.78%), Postives = 92/166 (55.42%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYS--SNISLGYATFTEER----------NLRCGH 60
           M+GILQFLW QGSPLMLSL+PY  Y Y+  +NISLGYATFT +           NL   +
Sbjct: 180 MKGILQFLWGQGSPLMLSLYPYDAYAYTGYTNISLGYATFTSQTEQNPPIRIDGNLYYKN 239

Query: 61  ILQ---------LGKLGAQLVGITI------------------LQHHLQL--HTTKILRG 120
           +           + K  A  V I I                  L ++L    H T   +G
Sbjct: 240 VFDEMVDAFHAAIDKACAGDVAIAIGETGWPTEGNYGAGPSLALTYNLNFKNHITS-GKG 299

Query: 121 TPMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           TPM PNIYI+    S+FNENE+PEGES+ YGMF+VDS TPIYP VF
Sbjct: 300 TPMKPNIYIEGFIRSLFNENEKPEGESQFYGMFHVDS-TPIYPSVF 343

BLAST of CaUC03G064100 vs. ExPASy TrEMBL
Match: A0A5A7UQE4 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001680 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 76/165 (46.06%), Postives = 91/165 (55.15%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSSNISLGYATFTEE---------------RNL- 60
           MRGILQFLW QGSPLMLSL+PY+ Y Y +NISLGYATFT +                NL 
Sbjct: 180 MRGILQFLWGQGSPLMLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLF 239

Query: 61  --------------RCGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGT 120
                           GH+ + +G+ G    G               + + H +   +GT
Sbjct: 240 DEVVDAFYAAIDKASVGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGT 299

Query: 121 PMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           PM PNIYI+    S+FNENE+PEGESR YGMFNVDS TPIY PVF
Sbjct: 300 PMKPNIYIEGFIKSLFNENEKPEGESRFYGMFNVDS-TPIYSPVF 341

BLAST of CaUC03G064100 vs. ExPASy TrEMBL
Match: A0A5D3CFE1 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001650 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 76/165 (46.06%), Postives = 91/165 (55.15%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSSNISLGYATFTEE---------------RNL- 60
           MRGILQFLW QGSPLMLSL+PY+ Y Y +NISLGYATFT +                NL 
Sbjct: 180 MRGILQFLWGQGSPLMLSLNPYEAYAY-NNISLGYATFTPQLEQNPPIRIDGNLSYNNLF 239

Query: 61  --------------RCGHI-LQLGKLGAQLVG---------ITILQHHLQLHTTKILRGT 120
                           GH+ + +G+ G    G               + + H +   +GT
Sbjct: 240 DEVVDAFYAAIDKASVGHVAIAIGETGWPTNGGNDGASPKLAATYNINFKNHISS-GKGT 299

Query: 121 PMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           PM PNIYI+    S+FNENE+PEGESR YGMFNVDS TPIY PVF
Sbjct: 300 PMKPNIYIEGFIKSLFNENEKPEGESRFYGMFNVDS-TPIYSPVF 341

BLAST of CaUC03G064100 vs. ExPASy TrEMBL
Match: A0A0A0LR03 ((1->3)-beta-glucan endohydrolase OS=Cucumis sativus OX=3659 GN=Csa_2G416760 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.3e-20
Identity = 75/167 (44.91%), Postives = 92/167 (55.09%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYV---YSSNISLGYATFTEER----------NLRCG 60
           M+GIL+FLW QGSPLMLSL+PY  Y    Y++NISLGYATFT +           NL   
Sbjct: 180 MKGILKFLWGQGSPLMLSLYPYDAYAYTGYTNNISLGYATFTSQTEQNPPIRIDGNLYYK 239

Query: 61  HILQ---------LGKLGAQLVGITI------------------LQHHLQL--HTTKILR 120
           ++           + K  A  V I I                  L ++L    H T   +
Sbjct: 240 NVFDDMVDAFHAAIDKACAGDVAIAIGETGWPTEGNYGAGPSLALTYNLNFKNHITS-GK 299

Query: 121 GTPMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           GTPM PNIYI+    S+FNENE+PEGES+ YGMF+VDS TPIYP VF
Sbjct: 300 GTPMKPNIYIEGFIRSLFNENEKPEGESQFYGMFHVDS-TPIYPSVF 344

BLAST of CaUC03G064100 vs. ExPASy TrEMBL
Match: A0A1S3BQU9 ((1->3)-beta-glucan endohydrolase OS=Cucumis melo OX=3656 GN=LOC103492534 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 71/166 (42.77%), Postives = 85/166 (51.20%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYS---SNISLGYATFTEER--------------- 60
           MRGIL FL  QGSPLMLSL+PY+ Y YS   +NI+LGYATFT +                
Sbjct: 46  MRGILHFLRGQGSPLMLSLYPYQAYAYSGYTNNITLGYATFTSQTEQNSSIRIDGDLTYN 105

Query: 61  ---------------NLRCGHI-LQLGKLGAQLVGITILQHHLQLHTTKIL-------RG 120
                              G++ + +G+ G    G       L L   K         +G
Sbjct: 106 NIFDEMVDAFYAAIDKANVGNVAIAIGETGWPTNGNYAANPSLALTYNKKFKNHITSGKG 165

Query: 121 TPMNPNIYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           TPM PNIYI+    S+FNENE+PEGESR YGMFNVDST P Y  VF
Sbjct: 166 TPMKPNIYIEGFIRSLFNENEKPEGESRFYGMFNVDSTRPSYSNVF 211

BLAST of CaUC03G064100 vs. ExPASy TrEMBL
Match: A0A6J1HVR6 ((1->3)-beta-glucan endohydrolase OS=Cucurbita maxima OX=3661 GN=LOC111467895 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 69/160 (43.12%), Postives = 86/160 (53.75%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSSNISLGYATFTEERNLRCGHILQLGKLGAQL- 60
           MRGIL+FL  +GSPLM+S++ Y  YVY  N SLGYAT +E+ +L    +L    L  ++ 
Sbjct: 177 MRGILEFLRGEGSPLMVSVYTYDQYVYGGNRSLGYATLSEQNSLVRDGMLSYNNLFDEMV 236

Query: 61  --------------VGITILQHHLQL-----HTTKIL---------------RGTPMNPN 120
                         V I I +           TT +L               +GTP   N
Sbjct: 237 DAFYAAIDKENVGDVAIVIGETGWPTCGNYNATTPLLAAEYNRNFKSHISSGKGTPRKEN 296

Query: 121 IYIQ----SIFNENEEPEGESRCYGMFNVDSTTPIYPPVF 122
           IYI+    SIFNEN++PEGESRCYGMFNVDS TPIY PVF
Sbjct: 297 IYIEGFIRSIFNENQKPEGESRCYGMFNVDS-TPIYSPVF 335

BLAST of CaUC03G064100 vs. TAIR 10
Match: AT5G56590.1 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 44.3 bits (103), Expect = 8.2e-05
Identity = 43/159 (27.04%), Postives = 64/159 (40.25%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYS-SNISLGYATFTEERNLRCGH--ILQLGKLGA 60
           +R +L+FL E  SP M+ L+PY  Y  S +N+SL Y  F     +   +  +L      A
Sbjct: 182 LRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSSEVIDPNTGLLYKNMFDA 241

Query: 61  QLVGITILQHHLQLHTTKIL-------------------------------------RGT 115
           Q+  +      L   T KI+                                     +GT
Sbjct: 242 QVDALYYALTALNFRTIKIMVTETGWPTKGSPKEKAAASSDNAETYNSNIIRHVVTNQGT 301

BLAST of CaUC03G064100 vs. TAIR 10
Match: AT4G29360.2 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 41/157 (26.11%), Postives = 61/157 (38.85%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSS-NISLGYATFTEERNL--RCGHILQLGKLGA 60
           ++ +L+FL E  SP M+ L+PY  Y  S+  + L YA F     +      +L      A
Sbjct: 182 LKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSSQVVDPATGLLYSNMFDA 241

Query: 61  QLVGITILQHHLQLHTTKIL------------------------------------RGTP 114
           QL  I      +   T K++                                     GTP
Sbjct: 242 QLDAIYFALTAMSFKTVKVMVTESGWPSKGSPKETAATPENALAYNTNLIRHVIGDPGTP 301

BLAST of CaUC03G064100 vs. TAIR 10
Match: AT4G29360.1 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 41/157 (26.11%), Postives = 61/157 (38.85%), Query Frame = 0

Query: 1   MRGILQFLWEQGSPLMLSLHPYKTYVYSS-NISLGYATFTEERNL--RCGHILQLGKLGA 60
           ++ +L+FL E  SP M+ L+PY  Y  S+  + L YA F     +      +L      A
Sbjct: 182 LKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSSQVVDPATGLLYSNMFDA 241

Query: 61  QLVGITILQHHLQLHTTKIL------------------------------------RGTP 114
           QL  I      +   T K++                                     GTP
Sbjct: 242 QLDAIYFALTAMSFKTVKVMVTESGWPSKGSPKETAATPENALAYNTNLIRHVIGDPGTP 301

BLAST of CaUC03G064100 vs. TAIR 10
Match: AT5G20340.1 (beta-1,3-glucanase 5 )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 38/159 (23.90%), Postives = 64/159 (40.25%), Query Frame = 0

Query: 4   ILQFLWEQGSPLMLSLHPYKTYVYS-SNISLGYATFTEERNLRCGHILQLGKLGAQLVGI 63
           +L+ L +  SP+++ ++PY +Y    S+I L YATF  E       ++Q G LG   +  
Sbjct: 198 VLKLLSQTNSPILVKIYPYFSYASDPSSIRLDYATFNTE-----AIVVQDGSLGYSNMFD 257

Query: 64  TILQHHL--------------------------QLHTTKIL--------------RGTPM 118
            I    +                           + T  I               +GTP 
Sbjct: 258 AIFDAFVWAMEKEGVKDLPMVVSETGWPSAGNGNITTPDIAGTYNRNFVKHIASGKGTPK 317

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880685.12.1e-2648.19probable glucan endo-1,3-beta-glucosidase BG5 [Benincasa hispida][more]
TYK10032.12.6e-2146.06lichenase-2-like [Cucumis melo var. makuwa][more]
KAA0055781.12.6e-2146.06lichenase-2-like [Cucumis melo var. makuwa][more]
XP_004153772.32.9e-2045.78probable glucan endo-1,3-beta-glucosidase BG4 [Cucumis sativus][more]
KAE8652284.12.9e-2045.78hypothetical protein Csa_021876 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UQE41.3e-2146.06(1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3CFE11.3e-2146.06(1->3)-beta-glucan endohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A0A0LR035.3e-2044.91(1->3)-beta-glucan endohydrolase OS=Cucumis sativus OX=3659 GN=Csa_2G416760 PE=3... [more]
A0A1S3BQU91.2e-1942.77(1->3)-beta-glucan endohydrolase OS=Cucumis melo OX=3656 GN=LOC103492534 PE=3 SV... [more]
A0A6J1HVR61.0e-1843.13(1->3)-beta-glucan endohydrolase OS=Cucurbita maxima OX=3661 GN=LOC111467895 PE=... [more]
Match NameE-valueIdentityDescription
AT5G56590.18.2e-0527.04O-Glycosyl hydrolases family 17 protein [more]
AT4G29360.24.1e-0426.11O-Glycosyl hydrolases family 17 protein [more]
AT4G29360.14.1e-0426.11O-Glycosyl hydrolases family 17 protein [more]
AT5G20340.14.1e-0423.90beta-1,3-glucanase 5 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.20.20.80Glycosidasescoord: 1..59
e-value: 1.1E-6
score: 29.8
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G064100.1CaUC03G064100.1mRNA