CaUC03G058030 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G058030
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein L33-like
Location	Ciama_Chr03: 9368188 .. 9369280 (-)
RNA-Seq Expression	CaUC03G058030
Synteny	CaUC03G058030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTATGCACTAAATCTCTAAACGGTTGAACTCTTAACGTTAAATTTTGTGTCTAGGTCTCATAATTTTCAATTTTGTATCAAGTCCTGAAATATTCTAACATCTTTTAAATTTAGGGACGTACTAAACACAAAATTGAAAATTTAAGGTCTCACTAGACATAAAATTCAATTCTATATCAGCTAATTTTTAAATATGTCAAGGCTTATTGGCACAAATTTGAAAGTTGGGGGATTCATTAGACACTTTTACTGTTCAGGGACCTATTAGACACAAAATTGATAATTCAAGTGCTATTATACACCTGTTGAAGTTAAACCGACTTGAAAGATTAGAGATTGGCGATTTAGCATGATATTTGAGTAAAAGCCCTGTGAATCATCATAATTTCATTTAACTTAGCATCTGCACGGTTTCATTGCAAATACCTGCTTGAATATGTTTTCTCATCCTCATTTTCTTCATGCTAATTCTATAACATAGCATATCAAGAACTAGCATTCAAAGTGACTTGTTGAAAGATACGTGAGAGATGAGACAATCTGGTGTAGGACGTATCTTGGGAATCTTTCATGATCTTTCTTTGATTCTTGGCTATCTTATAAAGTTTTTCAAGGTTTTTTGTTTTGAACCTTATCTTGTCTGGACAAAGTCTTTTGTTGTATTTAGTCTTTTTTATTGTATTCTTTAAAGTTGTTAGATGGCCAATAGTTTGTTAAAACAGCTTGTCCAGTTGGGTTTCCCAGCCCCGGGCTGCCTTCATTAATAAAATCATTACTGAATTTCTGTGGAAATTTTCTGTCATTCTCGACTTCACCAAGTGGTATCAGAGAGCACGATCCTTGCTCGTGAAACAGACCCTTGACTCTAAATGACTGGATGAGTTATTGTTTCTTCTTTTTGGTGTGTTAGGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGGTTCTTCTATGTCAAAAGAAAGCCAACCAAAATTACAGAGAAGCTTGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTCACGGAAGCGAAAATGAAGTGA

mRNA sequence

ATGGGAGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGGTTCTTCTATGTCAAAAGAAAGCCAACCAAAATTACAGAGAAGCTTGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTCACGGAAGCGAAAATGAAGTGA

Coding sequence (CDS)

ATGGGAGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGGTTCTTCTATGTCAAAAGAAAGCCAACCAAAATTACAGAGAAGCTTGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTCACGGAAGCGAAAATGAAGTGA

Protein sequence

MGEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Homology

[Close]

BLAST of CaUC03G058030 vs. NCBI nr
Match: KAG6575038.1 (hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 3  EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 34 EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 91

[Close]

BLAST of CaUC03G058030 vs. NCBI nr
Match: KAG7013613.1 (rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 3  EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 8  EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 65

[Close]

BLAST of CaUC03G058030 vs. NCBI nr
Match: XP_004135554.1 (uncharacterized protein LOC101212288 [Cucumis sativus] >XP_008445095.1 PREDICTED: 50S ribosomal protein L33-like [Cucumis melo] >XP_022138424.1 uncharacterized protein LOC111009599 [Momordica charantia] >XP_022958839.1 uncharacterized protein LOC111459991 [Cucurbita moschata] >XP_023006427.1 uncharacterized protein LOC111499157 [Cucurbita maxima] >XP_023548396.1 uncharacterized protein LOC111807061 [Cucurbita pepo subsp. pepo] >XP_038894807.1 50S ribosomal protein L33-like [Benincasa hispida] >KGN65933.1 hypothetical protein Csa_023249 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 6.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. NCBI nr
Match: XP_022137876.1 (uncharacterized protein LOC111009198 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. NCBI nr
Match: XP_007223555.1 (uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: 50S ribosomal protein L33 [Prunus mume] >XP_021808617.1 uncharacterized protein LOC110752307 [Prunus avium] >XP_034201389.1 50S ribosomal protein L33 [Prunus dulcis] >ONI28500.1 hypothetical protein PRUPE_1G144200 [Prunus persica] >ONI28501.1 hypothetical protein PRUPE_1G144200 [Prunus persica])

HSP 1 Score: 113.2 bits (282), Expect = 7.6e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. ExPASy Swiss-Prot
Match: Q2W1A2 (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 9  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Sbjct: 3  KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55

[Close]

BLAST of CaUC03G058030 vs. ExPASy Swiss-Prot
Match: B6IN38 (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 9  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Sbjct: 3  KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55

[Close]

BLAST of CaUC03G058030 vs. ExPASy Swiss-Prot
Match: B3CRY6 (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 8  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Sbjct: 3  RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56

[Close]

BLAST of CaUC03G058030 vs. ExPASy Swiss-Prot
Match: A8GY80 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 8  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of CaUC03G058030 vs. ExPASy Swiss-Prot
Match: Q1RGQ4 (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 8  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of CaUC03G058030 vs. ExPASy TrEMBL
Match: A0A6J1KVU2 (uncharacterized protein LOC111499157 OS=Cucurbita maxima OX=3661 GN=LOC111499157 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. ExPASy TrEMBL
Match: A0A0A0LVW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. ExPASy TrEMBL
Match: A0A6J1CA39 (uncharacterized protein LOC111009599 OS=Momordica charantia OX=3673 GN=LOC111009599 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. ExPASy TrEMBL
Match: A0A6J1H6A1 (uncharacterized protein LOC111459991 OS=Cucurbita moschata OX=3662 GN=LOC111459991 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. ExPASy TrEMBL
Match: A0A1S3BBV4 (50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of CaUC03G058030 vs. TAIR 10
Match: AT3G06320.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of CaUC03G058030 vs. TAIR 10
Match: AT5G18790.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

The following BLAST results are available for this feature:

BLAST of CaUC03G058030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575038.1	1.4e-23	100.00	hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7013613.1	1.4e-23	100.00	rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004135554.1	6.9e-23	100.00	uncharacterized protein LOC101212288 [Cucumis sativus] >XP_008445095.1 PREDICTED...	[more]
XP_022137876.1	1.2e-22	98.25	uncharacterized protein LOC111009198 [Momordica charantia]	[more]
XP_007223555.1	7.6e-22	94.74	uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: ...	[more]

BLAST of CaUC03G058030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2W1A2	3.3e-12	67.92	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
B6IN38	5.7e-12	66.04	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
B3CRY6	6.3e-11	61.11	50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=...	[more]
A8GY80	6.3e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]
Q1RGQ4	6.3e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp...	[more]

BLAST of CaUC03G058030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVU2	3.3e-23	100.00	uncharacterized protein LOC111499157 OS=Cucurbita maxima OX=3661 GN=LOC111499157...	[more]
A0A0A0LVW9	3.3e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=3 SV=1	[more]
A0A6J1CA39	3.3e-23	100.00	uncharacterized protein LOC111009599 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1H6A1	3.3e-23	100.00	uncharacterized protein LOC111459991 OS=Cucurbita moschata OX=3662 GN=LOC1114599...	[more]
A0A1S3BBV4	3.3e-23	100.00	50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=3 SV=1	[more]

BLAST of CaUC03G058030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06320.1	1.8e-21	86.21	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.8e-21	86.21	Ribosomal protein L33 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 7..60 e-value: 9.5E-18 score: 62.3
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 15..58 e-value: 1.0E-10 score: 41.9
IPR038584	Ribosomal protein L33 superfamily	GENE3D	2.20.28.120	Ribosomal protein L33	coord: 6..60 e-value: 4.4E-24 score: 86.0
None	No IPR available	PANTHER	PTHR15238:SF1	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 4..60
None	No IPR available	PANTHER	PTHR15238	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 4..60
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 7..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G058030.1	CaUC03G058030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003735	structural constituent of ribosome