CaUC03G056420 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G056420
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	transcription factor TCP10-like
Location	Ciama_Chr03: 7120060 .. 7120314 (-)
RNA-Seq Expression	CaUC03G056420
Synteny	CaUC03G056420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTCAAAGGCTTTCTCTTAATGATGGGGATAACAAGACCGCGAAGCTCGGCCGGAGAGACCGTCGCATCCGTTCAAGCGTCGGCGCCGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGACCGGCATTGAAGTCTACGACGTTGAGGATCACCTTGGCTACGACCGACCAATTGAAGCCATCGGTTGGCTTCTTCAGGATGCCAAATCCGCCATTGATGCCCTTTCTCGACCATTAG

mRNA sequence

ATGGGTTCTCAAAGGCTTTCTCTTAATGATGGGGATAACAAGACCGCGAAGCTCGGCCGGAGAGACCGTCGCATCCGTTCAAGCGTCGGCGCCGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGACCGGCATTGAAGTCTACGACGTTGAGGATCACCTTGGCTACGACCGACCAATTGAAGCCATCGGTTGGCTTCTTCAGGATGCCAAATCCGCCATTGATGCCCTTTCTCGACCATTAG

Coding sequence (CDS)

ATGGGTTCTCAAAGGCTTTCTCTTAATGATGGGGATAACAAGACCGCGAAGCTCGGCCGGAGAGACCGTCGCATCCGTTCAAGCGTCGGCGCCGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGACCGGCATTGAAGTCTACGACGTTGAGGATCACCTTGGCTACGACCGACCAATTGAAGCCATCGGTTGGCTTCTTCAGGATGCCAAATCCGCCATTGATGCCCTTTCTCGACCATTAG

Protein sequence

MGSQRLSLNDGDNKTAKLGRRDRRIRSSVGAGKVYTSKGLRARRLRPALKSTTLRITLATTDQLKPSVGFFRMPNPPLMPFLDH

Homology

[Close]

BLAST of CaUC03G056420 vs. NCBI nr
Match: XP_038893685.1 (transcription factor TCP10-like [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MGSQRLSLNDGDNKTAKLGRRDRRIRSSVGA--GKVYTSKGLRARRLR 47
          MGSQRLSLND D KTAKLGRRDRR+RSS GA  GKVYTS+GLRARR R
Sbjct: 1  MGSQRLSLNDEDEKTAKLGRRDRRLRSSAGAVPGKVYTSRGLRARRFR 48

[Close]

BLAST of CaUC03G056420 vs. NCBI nr
Match: XP_008443015.1 (PREDICTED: transcription factor TCP10-like [Cucumis melo] >KAA0057025.1 transcription factor TCP10-like [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-04
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 7  SLNDGDNKTAKLGRRDRRIRSS--VGAGKVYTSKGLRARRLR 47
          SL+D D K AK+GRR+RR+ SS   GAGKVYTSKGLRARRLR
Sbjct: 3  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLR 44

[Close]

BLAST of CaUC03G056420 vs. ExPASy TrEMBL
Match: A0A5A7UTZ9 (Transcription factor TCP10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002100 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 7  SLNDGDNKTAKLGRRDRRIRSS--VGAGKVYTSKGLRARRLR 47
          SL+D D K AK+GRR+RR+ SS   GAGKVYTSKGLRARRLR
Sbjct: 3  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLR 44

[Close]

BLAST of CaUC03G056420 vs. ExPASy TrEMBL
Match: A0A1S3B7T4 (transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 7  SLNDGDNKTAKLGRRDRRIRSS--VGAGKVYTSKGLRARRLR 47
          SL+D D K AK+GRR+RR+ SS   GAGKVYTSKGLRARRLR
Sbjct: 3  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLR 44

The following BLAST results are available for this feature:

BLAST of CaUC03G056420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893685.1	1.6e-09	83.33	transcription factor TCP10-like [Benincasa hispida]	[more]
XP_008443015.1	4.5e-04	73.81	PREDICTED: transcription factor TCP10-like [Cucumis melo] >KAA0057025.1 transcri...	[more]

BLAST of CaUC03G056420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G056420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTZ9	2.2e-04	73.81	Transcription factor TCP10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3B7T4	2.2e-04	73.81	transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=...	[more]

BLAST of CaUC03G056420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G056420.1	CaUC03G056420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity