CaUC02G043770 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G043770
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 31437854 .. 31440350 (-)
RNA-Seq ExpressionCaUC02G043770
SyntenyCaUC02G043770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAGTGTTACCACACGGCACATCCTCCACCGTTTCTTGCTTCTTTCCCATCCAAATGACAGTTCTCTGGACACTCTTCACATACAAATCTTTCTTCTCGCCGGGAACATAGTTTGGTCCCATAATTCTAACTTTCAAACCAGTTGAAACTTTCCCAGAGAAGACACGTCCAAAGGCAAAGAACCTGCCCTTGTCTGATGCAGGAATCATCTTCGATACATAAAGCATAAGAGGTCCTTCAGGATCACAACTTCTAATGGCACTCGCATAAGCATCATCTAGTGGACCCTCGTACAAATTCTCAACACGGTACTTTTGAGCCGTGGCAGGCGATGGAAGATGAAAGATCATCATTTCCAAAAGAGCATTGCTTGCTGGGAGCCATGTTTGCATGACCCTCTTCATCAATGCTTTACTCATCAGATCCTTCTCTTCAGACTTCATCACAACTCCAAGCTTCTGCAACATGGGCCATAGCTTGTCCTTCTGATCGTTCATGCAAGTTGCAATGATCTGCTTGATGGGTTCGTAGCAGAACTGGACAAACCCACGCTTGCATGTTGGAGAGCCAGTGTTCTTGCTCGTCCACTTCTTGGTTGCAGGATCAAAGAAGTTCTCACCCCAAAGTCTCTCCATCATCTTTGACTCGTCAACTCCAAACTTGGAGGCATACATCTTCGCAAAGTTAGTCAGGGTAAACGCCCAACCGTGCAGACCAGCAGAGAAAGCGACTGTTCCTTTCTCGGGGTACACTTGAACATCCCCAAGAAGTGGATCCTCGTATGTGGCCATAATCACATTGGCATTCTCTATCACCCTCTGAAATGTTTGATAAGCCTCTTCTCCATCCACTTGGAGTTCAAGGAAGCACCTGTCCATCTTGTTAACAGTCAAGACAGGTCTAATCCTCTCTCCCAAAGCCTGACGGAGCACGGTCTCTGTTTGGACACAAACACCTTCGACACAATCCACCACAACAAGGGCACCATCGGTAATACGCAAAGCAGCTGTAACCTCAGATGAGAAGTCAACGTGCCCGGGTGAATCAATAAGATTGATAAGATATTCATTTCCCTGTCTCTCTCCCTTGTAACTTTTCAAGGATTCATCAGACATCTCATAGTAGAGGGAGATTCCAGTAGATTTAATGGTGATACCACGCTCTGCCTCATCTTGGCGAGTGTCTGTCATTCGTACATCACCGGCAACTTCTTGTGCAATGATACCCGCAGCAGCCACAAGAGAGTCCGTAAGTGTTGACTTCCCTGAAATGAAAAACAAAAAATAAATAAGCTGTAAAGAAGTTATACAATGACAATTAATAGTTAATTTTAAAACTTTCCTTTTCCCACATTTACTCATTCTTTCAAACAATGATGATACATGATGATACGATATAACAATATGCAGTTTCTTTTACGAATAAAAGAACAGAAGACAACTCTGTCCATCTAAAACTACTGATTCTGTAAAGTCTTTATGCTCCACAAACATCTTTCAACTATCAAAATTTGGTGTGTAATTGGACTTCAAAAGTTGGTGGGCATCAAAATTTGATATCAACAGGAAAGATTGTTTTATTGTCATGTGAATTGACATGTAAAATCCCTCCCCCAAAAAAGTACATGCCAACCCCCACTTACCAAATATACAATAAATGAAAGCTAACGTTGTAGAGCTCCAAAAATAGCCGGCCATCATAAGTGAACTTAAAAATAAGTATCTTACCATGATCGACGTGAGCAATAACCGACATATTACGAATGTTATGCTTAAAGTCCATAATCCGACGGAGCTCCTCGGCTGTAAACTTCACCTGCACACACACAATTTCAAATACACAAAGTCGCATCAGTTATGAATGTAAAGAAGCACCTGACACATCACTTGATTAAAATCGTGACGACGAGAGTATACTAACCATCTTGACAAGTCTTCAGAAACCTGACAATACCCGAGGAATAAGAGGACTATGAACTGCAGAGAAACCAAACCACTACTGTTAAAACGATAAAAATAAGCAAATCAAACAATAACAGCAACATCGAGACAAGCAAATAGTAACTTCGGCATTAAGGATATACGCATCGTTAAAAAAAGGAAGCAAATCTTTAACATAGCCTACTCTCATCAGCTTAAACCCCGTTGATTCAACGAATTCATTCATTAACACAGTAATTATTACTTACAAAACGACTTTAATTGTGCAGTAGAATGTTTTTTTCAATCATTCAATCCATCGCATACTAGCGATTAGGATATGGATCTTGTAAGCATTAATTGAATAGAAACGAGTGAGCAAACAGATCTGGAAAAGCGCAAATACAAACAATCGCGAACGAATCTGAACATGATACGATTAAAAGACGAAAAGGTATGAAATTAGTTGCAAGTTAGATCAGAATGAAGAAGAACCTGAGGGAGAGCAAAGGAAGGCACTCCCCTTCAACCTGCAGAGAAGATTAGAGGAGCACAGAGCAGCAAAACAATGA

mRNA sequence

ATGGCAACAAACTGGACAAACCCACGCTTGCATGTTGGAGAGCCAGTGTTCTTGCTCGTCCACTTCTTGGTTGCAGGATCAAAGAAGTTCTCACCCCAAAGTCTCTCCATCATCTTTGACTCGTCAACTCCAAACTTGGAGGCATACATCTTCGCAAAGTTAGTCAGGGTAAACGCCCAACCGTGCAGACCAGCAGAGAAAGCGACTGTTCCTTTCTCGGGCCTCTTCTCCATCCACTTGGAGTTCAAGGAAGCACCTGTCCATCTTGTTAACAGTCAAGACAGGTCTAATCCTCTCTCCCAAAGCCTGACGGAGCACGGTCTCTGTTTGGACACAAACACCTTCGACACAATCCACCACAACAAGGGCACCATCGGATTCATCAGACATCTCATAGTAGAGGGAGATTCCAGTAGATTTAATGGTGATACCACGCTCTGCCTCATCTTGGCGAGTGTCTGTCATTCGTACATCACCGGCAACTTCTTGTGCAATGATACCCGCAGCAGCCACAAGAGAGTCCAAACGAGTGAGCAAACAGATCTGGAAAAGCGCAAATACAAACAATCGCGAACGAATCTGAACATGATACGATTAAAAGACGAAAAGAATGAAGAAGAACCTGAGGGAGAGCAAAGGAAGGCACTCCCCTTCAACCTGCAGAGAAGATTAGAGGAGCACAGAGCAGCAAAACAATGA

Coding sequence (CDS)

ATGGCAACAAACTGGACAAACCCACGCTTGCATGTTGGAGAGCCAGTGTTCTTGCTCGTCCACTTCTTGGTTGCAGGATCAAAGAAGTTCTCACCCCAAAGTCTCTCCATCATCTTTGACTCGTCAACTCCAAACTTGGAGGCATACATCTTCGCAAAGTTAGTCAGGGTAAACGCCCAACCGTGCAGACCAGCAGAGAAAGCGACTGTTCCTTTCTCGGGCCTCTTCTCCATCCACTTGGAGTTCAAGGAAGCACCTGTCCATCTTGTTAACAGTCAAGACAGGTCTAATCCTCTCTCCCAAAGCCTGACGGAGCACGGTCTCTGTTTGGACACAAACACCTTCGACACAATCCACCACAACAAGGGCACCATCGGATTCATCAGACATCTCATAGTAGAGGGAGATTCCAGTAGATTTAATGGTGATACCACGCTCTGCCTCATCTTGGCGAGTGTCTGTCATTCGTACATCACCGGCAACTTCTTGTGCAATGATACCCGCAGCAGCCACAAGAGAGTCCAAACGAGTGAGCAAACAGATCTGGAAAAGCGCAAATACAAACAATCGCGAACGAATCTGAACATGATACGATTAAAAGACGAAAAGAATGAAGAAGAACCTGAGGGAGAGCAAAGGAAGGCACTCCCCTTCAACCTGCAGAGAAGATTAGAGGAGCACAGAGCAGCAAAACAATGA

Protein sequence

MATNWTNPRLHVGEPVFLLVHFLVAGSKKFSPQSLSIIFDSSTPNLEAYIFAKLVRVNAQPCRPAEKATVPFSGLFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTIGFIRHLIVEGDSSRFNGDTTLCLILASVCHSYITGNFLCNDTRSSHKRVQTSEQTDLEKRKYKQSRTNLNMIRLKDEKNEEEPEGEQRKALPFNLQRRLEEHRAAKQ
Homology
[Close]
BLAST of CaUC02G043770 vs. NCBI nr
Match: PNR45791.1 (hypothetical protein PHYPA_015562 [Physcomitrium patens])

HSP 1 Score: 78.6 bits (192), Expect = 8.1e-11
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0 

Query: 75  LFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTI--------- 134
           L ++HL+ ++APVHLV+SQ R +PLSQ L +H L L  ++   +HH++ ++         
Sbjct: 365 LLALHLQLQKAPVHLVHSQHRPDPLSQCLPQHRLRLHAHSLHAVHHHQSSVRDPQRRRHL 424

Query: 135 ----------------------------GFIRHLIVEGDSSRFNGDTTLCLILASVCHSY 176
                                         +RHL+V+ D+ R +GD T+ LIL SV   +
Sbjct: 425 RRKVHMPGRVDQVDQVIMPVLLALVVLQRLLRHLVVQRDTGRLDGDATVRLILPSVRQPH 484

[Close]
BLAST of CaUC02G043770 vs. NCBI nr
Match: KAB8094714.1 (hypothetical protein EE612_021994 [Oryza sativa] >BAS87631.1 Os04g0118450 [Oryza sativa Japonica Group])

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-05
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 75  LFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTI 126
           L +  L+ KEAPVHLV+S+DR NPL++SL EH   L T+T +T+++++ TI
Sbjct: 44  LLTFDLKLKEAPVHLVHSKDRPNPLTKSLAEHSFSLHTDTLNTVNNHQSTI 94

[Close]
BLAST of CaUC02G043770 vs. NCBI nr
Match: BAS78940.1 (Os02g0519950 [Oryza sativa Japonica Group])

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-05
Identity = 25/52 (48.08%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 74  GLFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTI 126
           GL + +L+ KEAPVHLV+S+DR NPL++ L +H   L T+T +T+++++ TI
Sbjct: 43  GLLTFNLKLKEAPVHLVHSKDRPNPLTKGLAKHSFSLHTDTLNTVNNHQSTI 94

[Close]
BLAST of CaUC02G043770 vs. ExPASy TrEMBL
Match: A0A2K1JW97 (Uncharacterized protein OS=Physcomitrium patens OX=3218 GN=PHYPA_015562 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0 

Query: 75  LFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTI--------- 134
           L ++HL+ ++APVHLV+SQ R +PLSQ L +H L L  ++   +HH++ ++         
Sbjct: 365 LLALHLQLQKAPVHLVHSQHRPDPLSQCLPQHRLRLHAHSLHAVHHHQSSVRDPQRRRHL 424

Query: 135 ----------------------------GFIRHLIVEGDSSRFNGDTTLCLILASVCHSY 176
                                         +RHL+V+ D+ R +GD T+ LIL SV   +
Sbjct: 425 RRKVHMPGRVDQVDQVIMPVLLALVVLQRLLRHLVVQRDTGRLDGDATVRLILPSVRQPH 484

[Close]
BLAST of CaUC02G043770 vs. ExPASy TrEMBL
Match: A0A0P0VJL6 (Os02g0519950 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0519950 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 25/52 (48.08%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 74  GLFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTI 126
           GL + +L+ KEAPVHLV+S+DR NPL++ L +H   L T+T +T+++++ TI
Sbjct: 43  GLLTFNLKLKEAPVHLVHSKDRPNPLTKGLAKHSFSLHTDTLNTVNNHQSTI 94

[Close]
BLAST of CaUC02G043770 vs. ExPASy TrEMBL
Match: A0A0P0W6P2 (Os04g0118450 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0118450 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 75  LFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTI 126
           L +  L+ KEAPVHLV+S+DR NPL++SL EH   L T+T +T+++++ TI
Sbjct: 44  LLTFDLKLKEAPVHLVHSKDRPNPLTKSLAEHSFSLHTDTLNTVNNHQSTI 94

[Close]
BLAST of CaUC02G043770 vs. ExPASy TrEMBL
Match: A0A0E0DZ39 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 26/91 (28.57%), Postives = 48/91 (52.75%), Query Frame = 0 

Query: 39  FDSSTPNLEAYIFAKLVRVNAQPCRPAEKATVPFSGLFSIHLEFKEAPVHLVNSQDRSNP 98
           F     NL   + A+L + +    R  E          + +L+FK+  +HLV+S+DR NP
Sbjct: 13  FPHGVDNLPDGLIAELNKTSLASIRTGES----LISFLTTNLKFKKTSIHLVHSEDRPNP 72

Query: 99  LSQSLTEHGLCLDTNTFDTIHHNKGTIGFIR 130
           L++ L +H    + +T +T++HN+  I + +
Sbjct: 73  LTKGLAKHSFSSNADTLNTVNHNQNAISYTK 99

[Close]
BLAST of CaUC02G043770 vs. ExPASy TrEMBL
Match: A0A5J9VI01 (Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_17024 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.9e-04
Identity = 21/56 (37.50%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 74  GLFSIHLEFKEAPVHLVNSQDRSNPLSQSLTEHGLCLDTNTFDTIHHNKGTIGFIR 130
           G  + +L+ KEA +HLV++++R NPL++ LTEH   L T+  + ++H + TI + +
Sbjct: 461 GFLTANLKLKEASIHLVHNENRPNPLTKGLTEHSFSLHTDALNAVNHYQSTISYTK 516

The following BLAST results are available for this feature:
BLAST of CaUC02G043770 vs. NCBI nr
Match NameE-valueIdentityDescription
PNR45791.18.1e-1131.88hypothetical protein PHYPA_015562 [Physcomitrium patens][more]
KAB8094714.15.1e-0550.98hypothetical protein EE612_021994 [Oryza sativa] >BAS87631.1 Os04g0118450 [Oryza... [more]
BAS78940.15.1e-0548.08Os02g0519950 [Oryza sativa Japonica Group][more]
BLAST of CaUC02G043770 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G043770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2K1JW973.9e-1131.88Uncharacterized protein OS=Physcomitrium patens OX=3218 GN=PHYPA_015562 PE=4 SV=... [more]
A0A0P0VJL62.4e-0548.08Os02g0519950 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0519950 PE... [more]
A0A0P0W6P22.4e-0550.98Os04g0118450 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0118450 PE... [more]
A0A0E0DZ393.5e-0428.57Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A5J9VI017.9e-0437.50Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_17024... [more]
BLAST of CaUC02G043770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G043770.1CaUC02G043770.1mRNA