CaUC02G033580 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G033580
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein Ycf2
Location	Ciama_Chr02: 9701736 .. 9702583 (+)
RNA-Seq Expression	CaUC02G033580
Synteny	CaUC02G033580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGTCTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAAATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAACCATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGA

mRNA sequence

ATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGTCTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAAATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAACCATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGA

Coding sequence (CDS)

ATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGTCTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAAATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAACCATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGA

Protein sequence

MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGILTDRKRLQSI

Homology

[Close]

BLAST of CaUC02G033580 vs. NCBI nr
Match: YP_010128331.1 (hypothetical protein RF2 [Maclura tricuspidata] >YP_010128348.1 hypothetical protein RF2 [Maclura tricuspidata] >QPQ74940.1 hypothetical protein RF2 [Maclura tricuspidata] >QPQ74957.1 hypothetical protein RF2 [Maclura tricuspidata])

HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-112
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1737 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1796

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1797 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1856

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1857 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1916

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEG SYLYKC + + +  + + IL
Sbjct: 1917 CSIDPISIYMKKKSCNEGDSYLYKCYFELGTSMKKLTIL 1955

[Close]

BLAST of CaUC02G033580 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 413.7 bits (1062), Expect = 1.0e-111
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1732 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1791

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1792 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1851

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1852 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1911

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1912 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1950

[Close]

BLAST of CaUC02G033580 vs. NCBI nr
Match: WP_165486117.1 (Ycf2, partial [Candidatus Frankia meridionalis])

HSP 1 Score: 413.7 bits (1062), Expect = 1.0e-111
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 832  MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 891

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 892  APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 951

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 952  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1011

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1012 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1050

[Close]

BLAST of CaUC02G033580 vs. NCBI nr
Match: YP_009468904.1 (hypothetical chloroplast RF2 [Gynostemma compressum] >YP_009468924.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29805.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29806.1 hypothetical chloroplast RF2 [Gynostemma compressum])

HSP 1 Score: 413.7 bits (1062), Expect = 1.0e-111
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1729 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1788

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1789 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1848

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1849 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1908

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1909 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1947

[Close]

BLAST of CaUC02G033580 vs. NCBI nr
Match: YP_009752370.1 (Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata] >QIT04344.1 Ycf2 protein [Bryonia marmorata] >QIT04362.1 Ycf2 protein [Bryonia marmorata])

HSP 1 Score: 413.7 bits (1062), Expect = 1.0e-111
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1732 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1791

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1792 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1851

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1852 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1911

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1912 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1950

[Close]

BLAST of CaUC02G033580 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 2.6e-113
Identity = 204/219 (93.15%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1735 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1794

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1795 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1854

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSA HRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1855 NEALSISITQKKSIIDTNIIRSAFHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1914

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEG SYLYK  + + +  + + IL
Sbjct: 1915 CSIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTIL 1953

[Close]

BLAST of CaUC02G033580 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 3.7e-112
Identity = 202/219 (92.24%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1732 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1791

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSN RDLVALT
Sbjct: 1792 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1851

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1852 NEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1911

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            C IDPISIYMKKKSCNEG SYLYK  + + +  + + IL
Sbjct: 1912 CPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTIL 1950

[Close]

BLAST of CaUC02G033580 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 3.7e-112
Identity = 202/219 (92.24%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1750 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1809

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSN RDLVALT
Sbjct: 1810 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1869

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1870 NEALSISITQKKSIIDTNAIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1929

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            C IDPISIYMKKKSCNEG SYLYK  + + +  + + IL
Sbjct: 1930 CPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTIL 1968

[Close]

BLAST of CaUC02G033580 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 6.3e-112
Identity = 201/219 (91.78%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCST+NILVIASTHIPQKVDPALI
Sbjct: 1730 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTQNILVIASTHIPQKVDPALI 1789

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1790 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1849

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSI+DTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1850 NEALSISITQKKSILDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1909

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            C IDPISIYMKKKSCNEG SYLYK  + + +  + + IL
Sbjct: 1910 CPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTIL 1948

[Close]

BLAST of CaUC02G033580 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 9.1e-111
Identity = 199/219 (90.87%), Postives = 205/219 (93.61%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1750 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1809

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRR LIPQQRKHFFTLSYTRGFHLE KMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1810 APNKLNTCIKIRRFLIPQQRKHFFTLSYTRGFHLENKMFHTNGFGSITMGSNVRDLVALT 1869

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRS+VRSVQDHGI FYQIGRAVAQNV LSN
Sbjct: 1870 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSRVRSVQDHGIFFYQIGRAVAQNVFLSN 1929

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            C IDPISIYMKKKSCNEG SYLYK  + + +  + + IL
Sbjct: 1930 CPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTIL 1968

[Close]

BLAST of CaUC02G033580 vs. ExPASy TrEMBL
Match: A0A7T2HD08 (Uncharacterized protein OS=Maclura tricuspidata OX=210328 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1737 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1796

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1797 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1856

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1857 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1916

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEG SYLYKC + + +  + + IL
Sbjct: 1917 CSIDPISIYMKKKSCNEGDSYLYKCYFELGTSMKKLTIL 1955

[Close]

BLAST of CaUC02G033580 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.0e-112
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1730 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1789

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1790 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1849

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1850 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1909

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1910 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1948

[Close]

BLAST of CaUC02G033580 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.0e-112
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1729 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1788

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1789 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1848

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1849 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1908

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1909 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1947

[Close]

BLAST of CaUC02G033580 vs. ExPASy TrEMBL
Match: A0A6M3RUH1 (Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.0e-112
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1732 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1791

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1792 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1851

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1852 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1911

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1912 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1950

[Close]

BLAST of CaUC02G033580 vs. ExPASy TrEMBL
Match: A0A410HFC5 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.0e-112
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1732 MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 1791

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT
Sbjct: 1792 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 1851

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN
Sbjct: 1852 NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 1911

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            CSIDPISIYMKKKSCNEGGSYLYK  + + +  + + IL
Sbjct: 1912 CSIDPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTIL 1950

[Close]

BLAST of CaUC02G033580 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 392.5 bits (1007), Expect = 2.3e-109
Identity = 196/219 (89.50%), Postives = 204/219 (93.15%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNES+YL+LGLLVN LSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1744 MSPCIIWIPNIHDLDVNESSYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALI 1803

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGF SITMGS+ RDLVALT
Sbjct: 1804 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFESITMGSSARDLVALT 1863

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVL+SN
Sbjct: 1864 NEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLISN 1923

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            C IDPISIYMKKKSCNEG SYLYK  + + +  +   IL
Sbjct: 1924 CPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTIL 1962

[Close]

BLAST of CaUC02G033580 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 392.5 bits (1007), Expect = 2.3e-109
Identity = 196/219 (89.50%), Postives = 204/219 (93.15%), Query Frame = 0


Query: 1    MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALI 60
            MSPCIIWIPNIHDLDVNES+YL+LGLLVN LSRDCERCSTRNILVIASTHIPQKVDPALI
Sbjct: 1744 MSPCIIWIPNIHDLDVNESSYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALI 1803

Query: 61   APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALT 120
            APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGF SITMGS+ RDLVALT
Sbjct: 1804 APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFESITMGSSARDLVALT 1863

Query: 121  NEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSN 180
            NEALSISITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVL+SN
Sbjct: 1864 NEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLISN 1923

Query: 181  CSIDPISIYMKKKSCNEGGSYLYKCSWPIRSRRRSVGIL 220
            C IDPISIYMKKKSCNEG SYLYK  + + +  +   IL
Sbjct: 1924 CPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTIL 1962

The following BLAST results are available for this feature:

BLAST of CaUC02G033580 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010128331.1	3.6e-112	94.06	hypothetical protein RF2 [Maclura tricuspidata] >YP_010128348.1 hypothetical pro...	[more]
QIT04093.1	1.0e-111	94.06	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
WP_165486117.1	1.0e-111	94.06	Ycf2, partial [Candidatus Frankia meridionalis]	[more]
YP_009468904.1	1.0e-111	94.06	hypothetical chloroplast RF2 [Gynostemma compressum] >YP_009468924.1 hypothetica...	[more]
YP_009752370.1	1.0e-111	94.06	Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata...	[more]

BLAST of CaUC02G033580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WV7	2.6e-113	93.15	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	3.7e-112	92.24	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]
Q0ZIV6	3.7e-112	92.24	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	6.3e-112	91.78	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
B1NWJ3	9.1e-111	90.87	Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1	[more]

BLAST of CaUC02G033580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T2HD08	1.7e-112	94.06	Uncharacterized protein OS=Maclura tricuspidata OX=210328 GN=ycf2 PE=4 SV=1	[more]
A0A343F2F1	5.0e-112	94.06	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ET42	5.0e-112	94.06	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]
A0A6M3RUH1	5.0e-112	94.06	Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1	[more]
A0A410HFC5	5.0e-112	94.06	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]

BLAST of CaUC02G033580 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	2.3e-109	89.50	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.3e-109	89.50	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..74 e-value: 1.1E-7 score: 33.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..146
None	No IPR available	GENE3D	1.10.8.60		coord: 75..143 e-value: 1.1E-7 score: 33.4
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..204
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078:SF22	PROTEIN YCF2	coord: 1..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G033580.1	CaUC02G033580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity