Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAGTGATCTCAGCTTCCTTACTCTCTGCAATGGTATTTTACTCTTCTCTCCTCCCTTTTCTCCACTCTTTAAACCTTTATATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGGAATTCCGGTCTTATCGGCAACTCCGGCGACGAACATAGCGGCAGAAATGAAGCTCTAGGAGCTGCAATGGCAGATGGGAGCAGAAAAATTGAGAGGAAAGTTGAAATTGGAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAATTGAAGAATTGATTACAGAAGATGATAATGAAGATGAAGATGAAGAACAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGATTGTTTTGTAA
mRNA sequence
ATGAAGTTAGTGATCTCAGCTTCCTTACTCTCTGCAATGGTATTTTACTCTTCTCTCCTCCCTTTTCTCCACTCTTTAAACCTTTATATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGGAATTCCGGTCTTATCGGCAACTCCGGCGACGAACATAGCGGCAGAAATGAAGCTCTAGGAGCTGCAATGGCAGATGGGAGCAGAAAAATTGAGAGGAAAGTTGAAATTGGAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAATTGAAGAATTGATTACAGAAGATGATAATGAAGATGAAGATGAAGAACAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGATTGTTTTGTAA
Coding sequence (CDS)
ATGAAGTTAGTGATCTCAGCTTCCTTACTCTCTGCAATGGTATTTTACTCTTCTCTCCTCCCTTTTCTCCACTCTTTAAACCTTTATATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGGAATTCCGGTCTTATCGGCAACTCCGGCGACGAACATAGCGGCAGAAATGAAGCTCTAGGAGCTGCAATGGCAGATGGGAGCAGAAAAATTGAGAGGAAAGTTGAAATTGGAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAATTGAAGAATTGATTACAGAAGATGATAATGAAGATGAAGATGAAGAACAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGATTGTTTTGTAA
Protein sequence
MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNSGDEHSGRNEALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQEERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL
Homology
BLAST of CaUC02G028700 vs. NCBI nr
Match:
XP_038888415.1 (histone H3.v1-like [Benincasa hispida])
HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 149/166 (89.76%), Postives = 154/166 (92.77%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKLVISASLLSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLIGNS
Sbjct: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
Query: 61 GDEHSGRNEALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQE 120
DE SGRNEALGAAMADG+RKIE KVEI EERENGLIAKEEE EELIT +DE++E
Sbjct: 61 SDEQSGRNEALGAAMADGNRKIESKVEIEEERENGLIAKEEENEELIT------KDEDEE 120
Query: 121 ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQV VL
Sbjct: 121 ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFVL 160
BLAST of CaUC02G028700 vs. NCBI nr
Match:
XP_011658666.2 (glutamic acid-rich protein [Cucumis sativus])
HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 135/176 (76.70%), Postives = 149/176 (84.66%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+
Sbjct: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
Query: 61 GDEHSGRNEALGAA-MADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDE---- 120
DE S NEALGAA MADG+RKIE KVEI EER NGL+ E++IE LIT+++ E+E
Sbjct: 61 SDERSSGNEALGAATMADGNRKIESKVEIEEERGNGLVVNEDKIENLITDNEVEEERFMS 120
Query: 121 -DEEQEERFNFYEEE----EEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
+EE+EE + EEE EEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 YEEEEEEEIDEEEEEEEIDEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 176
BLAST of CaUC02G028700 vs. NCBI nr
Match:
XP_008462077.2 (PREDICTED: gem-associated protein 2-like [Cucumis melo])
HSP 1 Score: 190.7 bits (483), Expect = 1.0e-44
Identity = 123/161 (76.40%), Postives = 133/161 (82.61%), Query Frame = 0
Query: 13 MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNSGDEHSGRNEALG 72
MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+ +E S RNEALG
Sbjct: 1 MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 60
Query: 73 A-AMADGSRKIERK--VEIGEERENGLIAKEEEIEELITEDDNEDEDEE----QEERFNF 132
A MADG+RKIE K VE+ EER NGL+ EE+ E LIT DNEDE+E +EE
Sbjct: 61 AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLIT--DNEDEEERFISYEEEEEEE 120
Query: 133 YEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
EEEEEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 EEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 159
BLAST of CaUC02G028700 vs. NCBI nr
Match:
KAG6572225.1 (hypothetical protein SDJN03_28953, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 182.6 bits (462), Expect = 2.8e-42
Identity = 124/177 (70.06%), Postives = 141/177 (79.66%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI +S
Sbjct: 1 MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60
Query: 61 GDEHSGRN-----EALGAAMADGSRKIERKVEIGEERENGLIAKE--EEIEELITEDDNE 120
G E G + E+ GAAM D + IERKVE GEERENG IA+E EE E L+TE++ +
Sbjct: 61 GREQCGGHGSREAESPGAAMEDSTTIIERKVEDGEERENGFIAEEEQEESERLVTEEEQQ 120
Query: 121 DEDEEQEERFNFYEEEEEEEEEEI----DEELNKKCEEFIRKMKEGIKFESQQVIVL 167
E EEQEE+ EEEEEEE EE+ +EEL+KK EEFIRKMK GIK ESQQV++L
Sbjct: 121 QEHEEQEEQEEEEEEEEEEEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 177
BLAST of CaUC02G028700 vs. NCBI nr
Match:
KAG6589100.1 (hypothetical protein SDJN03_17665, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 180.6 bits (457), Expect = 1.1e-41
Identity = 117/170 (68.82%), Postives = 128/170 (75.29%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKL+ISASLLSAMVFYSSLLPFLHS NLYIS+T HKNYMFLLCNGLLVFIVRNSGLI S
Sbjct: 1 MKLLISASLLSAMVFYSSLLPFLHSFNLYISATAHKNYMFLLCNGLLVFIVRNSGLISCS 60
Query: 61 GDEHSGRN----EALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDED 120
GD HSG + EAL A+MADGS KIE KVE EER NGLI K+EE E I EDD+ D+D
Sbjct: 61 GDRHSGGDSRGAEALEASMADGSSKIESKVEDREERGNGLIQKDEESERSIMEDDDNDDD 120
Query: 121 EEQEERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
EE+ + EELNKKCEEFIRKMK GIK ESQQ++VL
Sbjct: 121 EEEVGALS-------------KEELNKKCEEFIRKMKAGIKLESQQLLVL 157
BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match:
A0A0A0K349 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 4.7e-51
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+
Sbjct: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
Query: 61 GDEHSGRNEALGAA-MADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQ 120
DE S NEALGAA MADG+RKIE KVEI EER NGL+ E++IE LIT ++E +
Sbjct: 61 SDERSSGNEALGAATMADGNRKIESKVEIEEERGNGLVVNEDKIENLIT------DNEVE 120
Query: 121 EERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
EERF Y EEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 EERFMSY---EEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 158
BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match:
A0A1S3CG16 (gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 5.0e-45
Identity = 123/161 (76.40%), Postives = 133/161 (82.61%), Query Frame = 0
Query: 13 MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNSGDEHSGRNEALG 72
MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+ +E S RNEALG
Sbjct: 1 MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 60
Query: 73 A-AMADGSRKIERK--VEIGEERENGLIAKEEEIEELITEDDNEDEDEE----QEERFNF 132
A MADG+RKIE K VE+ EER NGL+ EE+ E LIT DNEDE+E +EE
Sbjct: 61 AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLIT--DNEDEEERFISYEEEEEEE 120
Query: 133 YEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
EEEEEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 EEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 159
BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match:
A0A6J1EJY9 (uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC111435260 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.6e-41
Identity = 118/170 (69.41%), Postives = 129/170 (75.88%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKL+ISASLLSAMVFYSSLLPFLHS NLYIS+T HKNYMFLLCNGLLVFIVRNSGLI S
Sbjct: 1 MKLLISASLLSAMVFYSSLLPFLHSFNLYISATAHKNYMFLLCNGLLVFIVRNSGLISCS 60
Query: 61 GDEHSGRN----EALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDED 120
GD HSG + EAL A+MADGS KIE KVE EER NGLI K+EE E I EDD+ D+D
Sbjct: 61 GDRHSGGDSRGAEALEASMADGSSKIESKVEDREERGNGLIQKDEESERSIVEDDDNDDD 120
Query: 121 EEQEERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
++EEE EELNKKCEEFIRKMK GIK ESQQ++VL
Sbjct: 121 -----------DDEEEVGALSKEELNKKCEEFIRKMKAGIKLESQQLLVL 159
BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match:
A0A6J1I0H9 (sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468328 PE=4 SV=1)
HSP 1 Score: 174.9 bits (442), Expect = 2.9e-40
Identity = 120/176 (68.18%), Postives = 138/176 (78.41%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI +S
Sbjct: 1 MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60
Query: 61 GDEHSGRN-----EALGAAMADGSRKIERKVEIGEERENGLIAKEE-EIEELITEDDNED 120
G E G + EALGAAM D + IERKVE GEERENG IA+EE E E L+TE++ +
Sbjct: 61 GREQCGGHGSREAEALGAAMEDSTTIIERKVEDGEERENGFIAEEEQESERLVTEEEQQQ 120
Query: 121 EDEEQEERFNFYEEEEEEEEEEI----DEELNKKCEEFIRKMKEGIKFESQQVIVL 167
E EE+ +EEE+ E EE+ +EEL+KK EEFIRKMK GIK ESQQV++L
Sbjct: 121 EHEEE-------QEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 169
BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match:
A0A6J1C4P4 (ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 PE=4 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 3.0e-37
Identity = 108/165 (65.45%), Postives = 125/165 (75.76%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MK++ISASLLSAMV YSSLLPFLHSLNLYIS+TIHKNY+FLLCNGLLVFIVRNSGLIG S
Sbjct: 1 MKILISASLLSAMVLYSSLLPFLHSLNLYISATIHKNYIFLLCNGLLVFIVRNSGLIGGS 60
Query: 61 GDEHSGRNEALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQE 120
G+E G K+E KVE GEERENGL+A++EE E+LITED+ +E+
Sbjct: 61 GEEQG------------GGGKVESKVEDGEERENGLVAEQEESEKLITEDEEHEEE---- 120
Query: 121 ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIV 166
EEEEEE+ +EELN+KCEEFIRKMK IKFE QQV+V
Sbjct: 121 ------EEEEEEDGGLSNEELNQKCEEFIRKMKAEIKFELQQVLV 143
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038888415.1 | 1.9e-62 | 89.76 | histone H3.v1-like [Benincasa hispida] | [more] |
XP_011658666.2 | 2.2e-50 | 76.70 | glutamic acid-rich protein [Cucumis sativus] | [more] |
XP_008462077.2 | 1.0e-44 | 76.40 | PREDICTED: gem-associated protein 2-like [Cucumis melo] | [more] |
KAG6572225.1 | 2.8e-42 | 70.06 | hypothetical protein SDJN03_28953, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6589100.1 | 1.1e-41 | 68.82 | hypothetical protein SDJN03_17665, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K349 | 4.7e-51 | 79.04 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1 | [more] |
A0A1S3CG16 | 5.0e-45 | 76.40 | gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1 | [more] |
A0A6J1EJY9 | 2.6e-41 | 69.41 | uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC1114352... | [more] |
A0A6J1I0H9 | 2.9e-40 | 68.18 | sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
A0A6J1C4P4 | 3.0e-37 | 65.45 | ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 P... | [more] |
Match Name | E-value | Identity | Description | |