CaUC02G028700 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G028700
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionsodium/potassium/calcium exchanger 1-like
LocationCiama_Chr02: 2926222 .. 2926722 (+)
RNA-Seq ExpressionCaUC02G028700
SyntenyCaUC02G028700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAGTGATCTCAGCTTCCTTACTCTCTGCAATGGTATTTTACTCTTCTCTCCTCCCTTTTCTCCACTCTTTAAACCTTTATATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGGAATTCCGGTCTTATCGGCAACTCCGGCGACGAACATAGCGGCAGAAATGAAGCTCTAGGAGCTGCAATGGCAGATGGGAGCAGAAAAATTGAGAGGAAAGTTGAAATTGGAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAATTGAAGAATTGATTACAGAAGATGATAATGAAGATGAAGATGAAGAACAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGATTGTTTTGTAA

mRNA sequence

ATGAAGTTAGTGATCTCAGCTTCCTTACTCTCTGCAATGGTATTTTACTCTTCTCTCCTCCCTTTTCTCCACTCTTTAAACCTTTATATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGGAATTCCGGTCTTATCGGCAACTCCGGCGACGAACATAGCGGCAGAAATGAAGCTCTAGGAGCTGCAATGGCAGATGGGAGCAGAAAAATTGAGAGGAAAGTTGAAATTGGAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAATTGAAGAATTGATTACAGAAGATGATAATGAAGATGAAGATGAAGAACAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGATTGTTTTGTAA

Coding sequence (CDS)

ATGAAGTTAGTGATCTCAGCTTCCTTACTCTCTGCAATGGTATTTTACTCTTCTCTCCTCCCTTTTCTCCACTCTTTAAACCTTTATATCTCTTCAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGGAATTCCGGTCTTATCGGCAACTCCGGCGACGAACATAGCGGCAGAAATGAAGCTCTAGGAGCTGCAATGGCAGATGGGAGCAGAAAAATTGAGAGGAAAGTTGAAATTGGAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAATTGAAGAATTGATTACAGAAGATGATAATGAAGATGAAGATGAAGAACAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAATTGATGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGATTGTTTTGTAA

Protein sequence

MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNSGDEHSGRNEALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQEERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL
Homology
BLAST of CaUC02G028700 vs. NCBI nr
Match: XP_038888415.1 (histone H3.v1-like [Benincasa hispida])

HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 149/166 (89.76%), Postives = 154/166 (92.77%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MKLVISASLLSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLIGNS
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60

Query: 61  GDEHSGRNEALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQE 120
            DE SGRNEALGAAMADG+RKIE KVEI EERENGLIAKEEE EELIT      +DE++E
Sbjct: 61  SDEQSGRNEALGAAMADGNRKIESKVEIEEERENGLIAKEEENEELIT------KDEDEE 120

Query: 121 ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
           ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQV VL
Sbjct: 121 ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFVL 160

BLAST of CaUC02G028700 vs. NCBI nr
Match: XP_011658666.2 (glutamic acid-rich protein [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 135/176 (76.70%), Postives = 149/176 (84.66%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60

Query: 61  GDEHSGRNEALGAA-MADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDE---- 120
            DE S  NEALGAA MADG+RKIE KVEI EER NGL+  E++IE LIT+++ E+E    
Sbjct: 61  SDERSSGNEALGAATMADGNRKIESKVEIEEERGNGLVVNEDKIENLITDNEVEEERFMS 120

Query: 121 -DEEQEERFNFYEEE----EEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
            +EE+EE  +  EEE    EEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 YEEEEEEEIDEEEEEEEIDEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 176

BLAST of CaUC02G028700 vs. NCBI nr
Match: XP_008462077.2 (PREDICTED: gem-associated protein 2-like [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.0e-44
Identity = 123/161 (76.40%), Postives = 133/161 (82.61%), Query Frame = 0

Query: 13  MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNSGDEHSGRNEALG 72
           MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+ +E S RNEALG
Sbjct: 1   MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 60

Query: 73  A-AMADGSRKIERK--VEIGEERENGLIAKEEEIEELITEDDNEDEDEE----QEERFNF 132
           A  MADG+RKIE K  VE+ EER NGL+  EE+ E LIT  DNEDE+E     +EE    
Sbjct: 61  AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLIT--DNEDEEERFISYEEEEEEE 120

Query: 133 YEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
            EEEEEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 EEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 159

BLAST of CaUC02G028700 vs. NCBI nr
Match: KAG6572225.1 (hypothetical protein SDJN03_28953, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.6 bits (462), Expect = 2.8e-42
Identity = 124/177 (70.06%), Postives = 141/177 (79.66%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI +S
Sbjct: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60

Query: 61  GDEHSGRN-----EALGAAMADGSRKIERKVEIGEERENGLIAKE--EEIEELITEDDNE 120
           G E  G +     E+ GAAM D +  IERKVE GEERENG IA+E  EE E L+TE++ +
Sbjct: 61  GREQCGGHGSREAESPGAAMEDSTTIIERKVEDGEERENGFIAEEEQEESERLVTEEEQQ 120

Query: 121 DEDEEQEERFNFYEEEEEEEEEEI----DEELNKKCEEFIRKMKEGIKFESQQVIVL 167
            E EEQEE+    EEEEEEE EE+    +EEL+KK EEFIRKMK GIK ESQQV++L
Sbjct: 121 QEHEEQEEQEEEEEEEEEEEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 177

BLAST of CaUC02G028700 vs. NCBI nr
Match: KAG6589100.1 (hypothetical protein SDJN03_17665, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-41
Identity = 117/170 (68.82%), Postives = 128/170 (75.29%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MKL+ISASLLSAMVFYSSLLPFLHS NLYIS+T HKNYMFLLCNGLLVFIVRNSGLI  S
Sbjct: 1   MKLLISASLLSAMVFYSSLLPFLHSFNLYISATAHKNYMFLLCNGLLVFIVRNSGLISCS 60

Query: 61  GDEHSGRN----EALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDED 120
           GD HSG +    EAL A+MADGS KIE KVE  EER NGLI K+EE E  I EDD+ D+D
Sbjct: 61  GDRHSGGDSRGAEALEASMADGSSKIESKVEDREERGNGLIQKDEESERSIMEDDDNDDD 120

Query: 121 EEQEERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
           EE+    +              EELNKKCEEFIRKMK GIK ESQQ++VL
Sbjct: 121 EEEVGALS-------------KEELNKKCEEFIRKMKAGIKLESQQLLVL 157

BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match: A0A0A0K349 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.7e-51
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60

Query: 61  GDEHSGRNEALGAA-MADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQ 120
            DE S  NEALGAA MADG+RKIE KVEI EER NGL+  E++IE LIT      ++E +
Sbjct: 61  SDERSSGNEALGAATMADGNRKIESKVEIEEERGNGLVVNEDKIENLIT------DNEVE 120

Query: 121 EERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
           EERF  Y   EEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 EERFMSY---EEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 158

BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match: A0A1S3CG16 (gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 5.0e-45
Identity = 123/161 (76.40%), Postives = 133/161 (82.61%), Query Frame = 0

Query: 13  MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNSGDEHSGRNEALG 72
           MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGN+ +E S RNEALG
Sbjct: 1   MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 60

Query: 73  A-AMADGSRKIERK--VEIGEERENGLIAKEEEIEELITEDDNEDEDEE----QEERFNF 132
           A  MADG+RKIE K  VE+ EER NGL+  EE+ E LIT  DNEDE+E     +EE    
Sbjct: 61  AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLIT--DNEDEEERFISYEEEEEEE 120

Query: 133 YEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
            EEEEEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+ +L
Sbjct: 121 EEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 159

BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match: A0A6J1EJY9 (uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC111435260 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.6e-41
Identity = 118/170 (69.41%), Postives = 129/170 (75.88%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MKL+ISASLLSAMVFYSSLLPFLHS NLYIS+T HKNYMFLLCNGLLVFIVRNSGLI  S
Sbjct: 1   MKLLISASLLSAMVFYSSLLPFLHSFNLYISATAHKNYMFLLCNGLLVFIVRNSGLISCS 60

Query: 61  GDEHSGRN----EALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDED 120
           GD HSG +    EAL A+MADGS KIE KVE  EER NGLI K+EE E  I EDD+ D+D
Sbjct: 61  GDRHSGGDSRGAEALEASMADGSSKIESKVEDREERGNGLIQKDEESERSIVEDDDNDDD 120

Query: 121 EEQEERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIVL 167
                      ++EEE      EELNKKCEEFIRKMK GIK ESQQ++VL
Sbjct: 121 -----------DDEEEVGALSKEELNKKCEEFIRKMKAGIKLESQQLLVL 159

BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match: A0A6J1I0H9 (sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468328 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.9e-40
Identity = 120/176 (68.18%), Postives = 138/176 (78.41%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI +S
Sbjct: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60

Query: 61  GDEHSGRN-----EALGAAMADGSRKIERKVEIGEERENGLIAKEE-EIEELITEDDNED 120
           G E  G +     EALGAAM D +  IERKVE GEERENG IA+EE E E L+TE++ + 
Sbjct: 61  GREQCGGHGSREAEALGAAMEDSTTIIERKVEDGEERENGFIAEEEQESERLVTEEEQQQ 120

Query: 121 EDEEQEERFNFYEEEEEEEEEEI----DEELNKKCEEFIRKMKEGIKFESQQVIVL 167
           E EE+       +EEE+ E EE+    +EEL+KK EEFIRKMK GIK ESQQV++L
Sbjct: 121 EHEEE-------QEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 169

BLAST of CaUC02G028700 vs. ExPASy TrEMBL
Match: A0A6J1C4P4 (ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.0e-37
Identity = 108/165 (65.45%), Postives = 125/165 (75.76%), Query Frame = 0

Query: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
           MK++ISASLLSAMV YSSLLPFLHSLNLYIS+TIHKNY+FLLCNGLLVFIVRNSGLIG S
Sbjct: 1   MKILISASLLSAMVLYSSLLPFLHSLNLYISATIHKNYIFLLCNGLLVFIVRNSGLIGGS 60

Query: 61  GDEHSGRNEALGAAMADGSRKIERKVEIGEERENGLIAKEEEIEELITEDDNEDEDEEQE 120
           G+E              G  K+E KVE GEERENGL+A++EE E+LITED+  +E+    
Sbjct: 61  GEEQG------------GGGKVESKVEDGEERENGLVAEQEESEKLITEDEEHEEE---- 120

Query: 121 ERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVIV 166
                 EEEEEE+    +EELN+KCEEFIRKMK  IKFE QQV+V
Sbjct: 121 ------EEEEEEDGGLSNEELNQKCEEFIRKMKAEIKFELQQVLV 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888415.11.9e-6289.76histone H3.v1-like [Benincasa hispida][more]
XP_011658666.22.2e-5076.70glutamic acid-rich protein [Cucumis sativus][more]
XP_008462077.21.0e-4476.40PREDICTED: gem-associated protein 2-like [Cucumis melo][more]
KAG6572225.12.8e-4270.06hypothetical protein SDJN03_28953, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589100.11.1e-4168.82hypothetical protein SDJN03_17665, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K3494.7e-5179.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1[more]
A0A1S3CG165.0e-4576.40gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1[more]
A0A6J1EJY92.6e-4169.41uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC1114352... [more]
A0A6J1I0H92.9e-4068.18sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1C4P43.0e-3765.45ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 116..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..140
NoneNo IPR availablePANTHERPTHR34947TRANSMEMBRANE PROTEINcoord: 1..165
NoneNo IPR availablePANTHERPTHR34947:SF3TRANSMEMBRANE PROTEINcoord: 1..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G028700.1CaUC02G028700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane