CaUC02G028250 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G028250
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
LocationCiama_Chr02: 2578609 .. 2580345 (+)
RNA-Seq ExpressionCaUC02G028250
SyntenyCaUC02G028250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAATTTATAATTTAATTTTAAAAAAGAAAAAGAAAAAGTCCCCCGTTTTCTCTAGTAGCGGCGGCAGGGTTTAGCATATCAATGCCCTAAATCTAAGACGGAACTCCGTTCGTTTATCGTGGCTGCATTCTCAGATTTGCCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGTAATTTCCTCACAAGCCTTCCATTTCAACAAAATGTGTTCAATGTAAATTAATTGTGGAAACTGTGTGAGTTGAGTTAACATGCGTAGAAAAGTATGCCGAGTGTTCTCATAGGTGTTTTCTTTTTTCTATAAAGGATTCCAGTTGAAATGAGCTTCTGCGTGGAGTCCATGCTTCCATTCCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCAGTCTCTTCTTCGTCTTCTAGTAGTTTGTCGAGTGAATTTTACTTTTCCCAATGTTCTTGTTATTGTTGCCACTATGAAGGTTTCTGATTTCTGTTGGCCAAAAAGTTGGATAGCTGTGTTGTCAAATACGCAGAATAGCTTGATTTGTTACTTGGATTGCCTTTGATAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGTTTATATATATATATATATATATATTTATATATTGACAAGAGGACAACTATTTATTGATATTTGAAAAGTTACAAGAAACCAAACTCCTATTACAAACCTAACTAGGAGGATAGTTATAAGAGAAGAACAAAGAGGCTAGGTTCTAAACGTCATTCCATCACGATTTGTGCTGTTTGAAAACAATAATGGATAACAGAAAGAAGCCCGAGGCCGAGCGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGTGCGTTGGGCTTACATTATCACTTTCTGATGAGGGCTTCCATGGCCGCTTTGCTGCCCTAGCTTTGCAGTCAAAGCGAGGGGTTTCGCCCTACATTAAAATAAAAAAATGGATAACAGTTCTCCAACTAGTTCATCACAAATGCTCATGTCAAACCAATGCCAATATTTTGGGCTAAATGTATTTCCCTGCTGCTTTTGTAATCTAAATGCTCTTTTGGCTTGATAGAACAAATGTCCTATCCGGCCCCTTCTTCTTCGCTTTTTCCACATCAATGGATTGTGAATGTGAGTTCATCTTCCTAAGATAAAAGATTAAATGCTGAAGAAGTAACAAATCACTTCTCTCCCACTGTAACTTGTGATTTAGTTCTTTATAAGTGATGCTTGTATATTACAAAACACAACTATTTCTTCCACATAATTGATATAAACGTGAGATACTAATTGTGATGTTTAATCAGTGTTCAATGATGATGTGTGATGATGAATGGTCAAGGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTCGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG

mRNA sequence

CGAATTTATAATTTAATTTTAAAAAAGAAAAAGAAAAAGTCCCCCGTTTTCTCTAGTAGCGGCGGCAGGGTTTAGCATATCAATGCCCTAAATCTAAGACGGAACTCCGTTCGTTTATCGTGGCTGCATTCTCAGATTTGCCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGATTCCAGTTGAAATGAGCTTCTGCGTGGAGTCCATGCTTCCATTCCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGAAAGAAGCCCGAGGCCGAGCGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTCGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGATTCCAGTTGAAATGAGCTTCTGCGTGGAGTCCATGCTTCCATTCCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGAAAGAAGCCCGAGGCCGAGCGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTCGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG

Protein sequence

MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEVQPMEDVICVIYTIDPIFLALRMKDEKEEDEIVKGRKKPEAERFPLELGVAWYSTGRGFSNCGALSGRKVLCAEFYIVTVAAAKFRELIRWNLVFHVLAFSLVCMS
Homology
[Close]
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-34
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFA RAIFRSSSGKAATLLSVGARAAPARSPF +ASKRPFS+CSVRIPVEMSFCVESM
Sbjct: 1  MASFAGRAIFRSSSGKAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVQPME 94
          LPFHSATSSALM SMLSVSRH+YGWLSEV  ++
Sbjct: 61 LPFHSATSSALMISMLSVSRHNYGWLSEVTGLQ 93

[Close]
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_038887456.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-34
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFA RAIFRSSSGKAATLLSVGARAAPARSPF +ASKRPFS+CSVRIPVEMSFCVESM
Sbjct: 1  MASFAGRAIFRSSSGKAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 90
          LPFHSATSSALM SMLSVSRH+YGWLSEV
Sbjct: 61 LPFHSATSSALMISMLSVSRHNYGWLSEV 89

[Close]
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_038887457.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 7.4e-34
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFA RAIFRSSSGKAATLLSVGARAAPARSPF +ASKRPFS+CSVRIPVEMSFCVESM
Sbjct: 1  MASFAGRAIFRSSSGKAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALM SMLSVSRH+YGWLSE
Sbjct: 61 LPFHSATSSALMISMLSVSRHNYGWLSE 88

[Close]
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-33
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFAARAI RSS GKAATLLSVGARAAPARSPF +ASKRP S+C+VR+PVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVQPME 94
          LPFHSATSSALMTSMLSVSRHSYGWLSEV  ++
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQ 93

[Close]
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_023554651.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 8.2e-33
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFAARAI RSS GKAATLLSVGARAAPARSPF +ASKRP S+C+VR+PVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 90
          LPFHSATSSALMTSMLSVSRHSYGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 89

[Close]
BLAST of CaUC02G028250 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-11
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARAIFRSSSGKAATLLSVGARAAPARSP---FGVASKRPFSKCSVRIPVEMSFCVESMLP 65
          AR++ R++S ++A   S G  A+ A+S    F   ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFAARAIFRSSSGK ATLLS GARAAPARSPF +ASKRPFS  S RIP+EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVQPME 94
          LPFHSATSSALMTSMLSVS HSYGWLSEV  ++
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQ 93

[Close]
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFAARAI RSS G+AATLLSVG+RAAPARS F +ASKRPFS+C+VR+PVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVQPME 94
          LPFHSATSSALMTSMLSVSRHSYGWLSEV  ++
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQ 93

[Close]
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFAARAIFRSSSGKAATLLS GARAAPARSPF +ASKRPFS  S RIP+EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVS HSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSE 88

[Close]
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFAARAIFRSSSGKAATLLS GARAAPARSPF +ASKRPFS  S RIP+EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 89
          LPFHSATSSALMTSMLSVS HSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSE 88

[Close]
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-32
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESM 60
          MASFAARAI RSS G+AATLLSVG+RAAPARS F +ASKRPFS+C+VR+PVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 90
          LPFHSATSSALMTSMLSVSRHSYGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 89

[Close]
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-12
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARAIFRSSSGKAATLLSVGARAAPARSP---FGVASKRPFSKCSVRIPVEMSFCVESMLP 65
          AR++ R++S ++A   S G  A+ A+S    F   ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-12
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARAIFRSSSGKAATLLSVGARAAPARSP---FGVASKRPFSKCSVRIPVEMSFCVESMLP 65
          AR++ R++S ++A   S G  A+ A+S    F   ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-12
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARAIFRSSSGKAATLLSVGARAAPARSP---FGVASKRPFSKCSVRIPVEMSFCVESMLP 65
          AR++ R++S ++A   S G  A+ A+S    F   ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-11
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 0 

Query: 5  AARAIFRSSSGKAATL---LSVGARAAP--ARSPFGVASKRPFSKCSVRIPVEMSFCVES 64
          AAR++FRS++ +A++     S G +  P  AR+ F +  + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 87
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-11
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 0 

Query: 5  AARAIFRSSSGKAATL---LSVGARAAP--ARSPFGVASKRPFSKCSVRIPVEMSFCVES 64
          AAR++FRS++ +A++     S G +  P  AR+ F +  + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 87
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:
BLAST of CaUC02G028250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887455.11.9e-3489.25protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa his... [more]
XP_038887456.13.3e-3493.26protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa his... [more]
XP_038887457.17.4e-3493.18protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa his... [more]
XP_023554650.14.8e-3387.10protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_023554651.18.2e-3391.01protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
BLAST of CaUC02G028250 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ34.1e-1148.84Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CB401.5e-3286.02protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1I2782.0e-3284.95protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A5D3CTR82.6e-3290.91Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7TDD12.6e-3290.91Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A6J1HZK63.4e-3288.76protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
BLAST of CaUC02G028250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20585.12.9e-1248.84nuclear fusion defective 6 [more]
AT2G20585.22.9e-1248.84nuclear fusion defective 6 [more]
AT2G20585.32.9e-1248.84nuclear fusion defective 6 [more]
AT1G28395.27.2e-1145.98unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.17.2e-1145.98unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..88
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G028250.1CaUC02G028250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy
cellular_component GO:0016021 integral component of membrane