CaUC02G028250 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CGAATTTATAATTTAATTTTAAAAAAGAAAAAGAAAAAGTCCCCCGTTTTCTCTAGTAGCGGCGGCAGGGTTTAGCATATCAATGCCCTAAATCTAAGACGGAACTCCGTTCGTTTATCGTGGCTGCATTCTCAGATTTGCCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGTAATTTCCTCACAAGCCTTCCATTTCAACAAAATGTGTTCAATGTAAATTAATTGTGGAAACTGTGTGAGTTGAGTTAACATGCGTAGAAAAGTATGCCGAGTGTTCTCATAGGTGTTTTCTTTTTTCTATAAAGGATTCCAGTTGAAATGAGCTTCTGCGTGGAGTCCATGCTTCCATTCCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCAGTCTCTTCTTCGTCTTCTAGTAGTTTGTCGAGTGAATTTTACTTTTCCCAATGTTCTTGTTATTGTTGCCACTATGAAGGTTTCTGATTTCTGTTGGCCAAAAAGTTGGATAGCTGTGTTGTCAAATACGCAGAATAGCTTGATTTGTTACTTGGATTGCCTTTGATAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGTTTATATATATATATATATATATATTTATATATTGACAAGAGGACAACTATTTATTGATATTTGAAAAGTTACAAGAAACCAAACTCCTATTACAAACCTAACTAGGAGGATAGTTATAAGAGAAGAACAAAGAGGCTAGGTTCTAAACGTCATTCCATCACGATTTGTGCTGTTTGAAAACAATAATGGATAACAGAAAGAAGCCCGAGGCCGAGCGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGTGCGTTGGGCTTACATTATCACTTTCTGATGAGGGCTTCCATGGCCGCTTTGCTGCCCTAGCTTTGCAGTCAAAGCGAGGGGTTTCGCCCTACATTAAAATAAAAAAATGGATAACAGTTCTCCAACTAGTTCATCACAAATGCTCATGTCAAACCAATGCCAATATTTTGGGCTAAATGTATTTCCCTGCTGCTTTTGTAATCTAAATGCTCTTTTGGCTTGATAGAACAAATGTCCTATCCGGCCCCTTCTTCTTCGCTTTTTCCACATCAATGGATTGTGAATGTGAGTTCATCTTCCTAAGATAAAAGATTAAATGCTGAAGAAGTAACAAATCACTTCTCTCCCACTGTAACTTGTGATTTAGTTCTTTATAAGTGATGCTTGTATATTACAAAACACAACTATTTCTTCCACATAATTGATATAAACGTGAGATACTAATTGTGATGTTTAATCAGTGTTCAATGATGATGTGTGATGATGAATGGTCAAGGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTCGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG CGAATTTATAATTTAATTTTAAAAAAGAAAAAGAAAAAGTCCCCCGTTTTCTCTAGTAGCGGCGGCAGGGTTTAGCATATCAATGCCCTAAATCTAAGACGGAACTCCGTTCGTTTATCGTGGCTGCATTCTCAGATTTGCCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGATTCCAGTTGAAATGAGCTTCTGCGTGGAGTCCATGCTTCCATTCCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGAAAGAAGCCCGAGGCCGAGCGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTCGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGATTCCAGTTGAAATGAGCTTCTGCGTGGAGTCCATGCTTCCATTCCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGAAAGAAGCCCGAGGCCGAGCGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTCGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEVQPMEDVICVIYTIDPIFLALRMKDEKEEDEIVKGRKKPEAERFPLELGVAWYSTGRGFSNCGALSGRKVLCAEFYIVTVAAAKFRELIRWNLVFHVLAFSLVCMS Homology
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida]) HSP 1 Score: 156.8 bits (395), Expect = 1.9e-34 Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 0
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_038887456.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa hispida]) HSP 1 Score: 156.0 bits (393), Expect = 3.3e-34 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_038887457.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida]) HSP 1 Score: 154.8 bits (390), Expect = 7.4e-34 Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 152.1 bits (383), Expect = 4.8e-33 Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0
BLAST of CaUC02G028250 vs. NCBI nr
Match: XP_023554651.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 151.4 bits (381), Expect = 8.2e-33 Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0
BLAST of CaUC02G028250 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.1e-11 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32 Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 0
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32 Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32 Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32 Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0
BLAST of CaUC02G028250 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 3.4e-32 Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 69.7 bits (169), Expect = 2.9e-12 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 69.7 bits (169), Expect = 2.9e-12 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 69.7 bits (169), Expect = 2.9e-12 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 7.2e-11 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 0
BLAST of CaUC02G028250 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 7.2e-11 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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