CaUC01G010340 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G010340
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRNase H domain-containing protein
LocationCiama_Chr01: 14951491 .. 14953644 (-)
RNA-Seq ExpressionCaUC01G010340
SyntenyCaUC01G010340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAGGATGGTTGGAGGATCTAAAGATCTAGAATTTGAGCCTATGGAGAAATTGAATATCACGGGATGGTTAGATGGTTACCGAAAACCTAGATTCTGGGCCTTTGAGAAGTACCTCTCGTAGGATGGTCAGAGGACCGACGGTTTAACTTTTGAGCCCATAAGAGGTAGGTTTTTATGCACATAGAGAGAATGACGATCTGCTGAGCCAAGTAGAGCTAGTAGGGAATGAGTACGGTATAGAGATAACCTCCAGTATTGTGATTTGAGTAGGTAACCTCATTATGATGTGTATATAAGATGTTTGAAATGTTTAAGGGTCAAGAGGGTCTCTATGATTGTTTGCCACTCACTAGGTATCAATCTCACTCTTTTCTTTTGTGTTTTCCTTCTCAAGTAAGTAAAGGAGTTCCCGTTGTTGTGTGAAGTCGAGGTATGCCACAAGATAATTATACTTTACTAGACATTACTAAGTTGTAAAATAAGCTATAAGTTTGTCTGAGAATTGTATAAATGTTAACCATTCCATCCTTGTTGTTACGCTTGGTTTGGGCACCAAATGAGAATAGTTTGAGATGGACAGTAAATGTCACAAGAGAGTGATGTTTGTTGTCTTATTACGCCTCCTCTTGGGTTAAAGAGGTTAATCTGGGAGGGGGGTGACACAATGATGCTCCAACTTAAATTTATATATTTGCTTCCGTTTTAGGGCAAAATGTATGGAGAAAAGGAGGAGGAACACAACCCCAGCTCGATTTTTCTTTCTCTTTCTCACATCTTAGCTTAGTTTTTCTTCTTAATTTTGGCTTGTAATCATGGATTGAGAACTCTCCCCTCTACTTTCTTTGTGTATGAAGATGTTGAGGTAAGTATTTTCTAGTTCTTGGGAGCAAACCTATGTAATTATTTTGAGACTTATCCTTGTATGAACTTCATATTTTGATTTTTGTTTCTTTGAATCTAATGTATATTTAGATGTATGTTTTTAAGTGATTGATATCGAACCTAATTAGGACTCAAGACTTGTTTTAATTGATAGCTATCGAACCCCTTTAGGACTCAAGACTTGTAGTTTAATTAGAGCCTTTCCTTTAGTTGATAATTAGGACACTTATTTACCTTAATTCTATGAGTTGGTTGCTTGTAGCGTCGAAGAGTTTGATTAAATTAAACAGGTCGTTGTGTAAACAATCAAATATGCATGTGTTTAACCAAAAGTAAGTCAGTGATAGAAATTACGTAGGAACCCAATTGCTCCCAAGAACTAGAGCATCTCACCCTTGGTTTCATTTACCCCTTATCTTTACTTTCTCTTCTTTAATTTTCTCACCCTTGGTAATTAGCTAAACAAAATAGTGTTTGCAGTTCGTGTGGATCGACCCGAATTTGTCACTTGTACTAAGCCATCGTGGTATAGGTAGTAGGGTCCGGTATTATGAATGAAGCCCGGAAGGAATCTCATCAAGGAGGGTGGGATTCTAAAAGGACTCATTCATGAGGTGCTAGTGTGGATGGCTGAGAAGTTGAGTCGTGAAGAATTTATGGACTATGTGGGAAGACAGGAATAAGGTGAACTGTTATTCCCCCCTCATTCCAATGGATTGGAAGAACGAATGGATCGAAAATTATGTTTTTGATGTTAGGAGGGTGGGTGGTCGTCTCGGTCATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCCCGCCAGTGAGGGGTGGCTTCAAGTTAAACGTTGACGTGGCTTGTCATCTGAATCAGTCGGAGATTGGGCTGGGCGATATGATTAGACATGATGGTGGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTGGTTCCTAGAGGTTGTAATATAATGGTCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA

mRNA sequence

ATGCACAGGATGGTTGGAGGATCTAAAGATCTAGAATTTGAGCCTATGGAGAAATTGAATATCACGGGATGGTTAGATGGTTACCGAAAACCTAGATTCTGGGCCTTTGAGAAAGAGAATGACGATCTGCTGAGCCAAGTAGAGCTAGTAGGGAATGAGTACGGAGGGTGGGTGGTCGTCTCGGTCATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCCCGCCAGTGAGGGGTGGCTTCAAGTTAAACGTTGACGTGGCTTGTCATCTGAATCAGTCGGAGATTGGGCTGGGCGATATGATTAGACATGATGGTGGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTGGTTCCTAGAGGTTGTAATATAATGGTCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA

Coding sequence (CDS)

ATGCACAGGATGGTTGGAGGATCTAAAGATCTAGAATTTGAGCCTATGGAGAAATTGAATATCACGGGATGGTTAGATGGTTACCGAAAACCTAGATTCTGGGCCTTTGAGAAAGAGAATGACGATCTGCTGAGCCAAGTAGAGCTAGTAGGGAATGAGTACGGAGGGTGGGTGGTCGTCTCGGTCATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCCCGCCAGTGAGGGGTGGCTTCAAGTTAAACGTTGACGTGGCTTGTCATCTGAATCAGTCGGAGATTGGGCTGGGCGATATGATTAGACATGATGGTGGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTGGTTCCTAGAGGTTGTAATATAATGGTCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA

Protein sequence

MHRMVGGSKDLEFEPMEKLNITGWLDGYRKPRFWAFEKENDDLLSQVELVGNEYGGWVVVSVMWRHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQIVGL
Homology
BLAST of CaUC01G010340 vs. NCBI nr
Match: XP_030939647.1 (uncharacterized protein LOC115964488 [Quercus lobata])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-08
Identity = 47/158 (29.75%), Postives = 73/158 (46.20%), Query Frame = 0

Query: 65   RHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQA---LFRLGCLN 124
            R S   +W PP +G +K+NVD A      ++G+G +IR+D G+V+ A +      LG L 
Sbjct: 1070 RMSLTVQWSPPAQGSYKVNVDGAVFTKCQQMGIGVIIRNDRGEVIAAMSKRMAVPLGALE 1129

Query: 125  VEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSS 184
             EA  + T    +  A N+   D   E +   +   LH  + PS+    I    L    S
Sbjct: 1130 TEAKAMET---AVRFAANVGIRDAIFEGDSLTIYNALHGLSSPSAAIQNIVTGILRQAQS 1189

Query: 185  WKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQ 220
            ++   FS + R  N+  + LA  +C V   D   WL +
Sbjct: 1190 FRTFAFSHIKRQGNVPAHVLAQHACNV--DDYVTWLEE 1222

BLAST of CaUC01G010340 vs. NCBI nr
Match: XP_023873208.1 (uncharacterized protein LOC111985788 [Quercus suber])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-08
Identity = 50/190 (26.32%), Postives = 83/190 (43.68%), Query Frame = 0

Query: 37  EKENDDLLSQVELVGN-------EYGGWVVVSVMWRHSSVQRWFPPVRGGFKLNVDVACH 96
           E+ N         +GN       EY   +  +V  + +  + W PP  G FKLNVD A  
Sbjct: 34  EERNGGARKNATRIGNDALQYLAEYQECIAETVQRKETQPEFWKPPPSGMFKLNVDGAVF 93

Query: 97  LNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVES 156
            +Q   G+G +IR + GKV+ A +      L     E   +  GL  A +L   +  +E 
Sbjct: 94  ADQKAAGVGALIRDEEGKVIGALSKKITAPLKALEIEAKAVEVGLQFAKDLSIQEFILEG 153

Query: 157 NIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVK 216
           +  +V+  L   + P S  A I   ++++   ++   FS V R  N   ++LA+ +  + 
Sbjct: 154 DSLLVINALKELSLPPSSVAAIISSSMSVSHEFRKIVFSHVRRQGNRPAHSLANYASSI- 213

Query: 217 YSDLHEWLSQ 220
             D   WL +
Sbjct: 214 -DDFSVWLEE 221

BLAST of CaUC01G010340 vs. NCBI nr
Match: XP_015380596.1 (uncharacterized protein LOC107174324 [Citrus sinensis])

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-08
Identity = 46/160 (28.75%), Postives = 71/160 (44.38%), Query Frame = 0

Query: 65  RHSSV--QRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNV 124
           +H  V  +RW PP  G FK NVD A  ++Q   GLG +IR+  GKVV A     +    V
Sbjct: 9   KHEDVVQKRWKPPPAGWFKANVDAAVKIDQQRTGLGVVIRNPEGKVVAAAMKTTIFLDKV 68

Query: 125 EAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSW 184
           +  E      GL +A +  C+ + +ES+ + VV  +       +    +  E        
Sbjct: 69  DYAEAEATQFGLEIAEHAGCIPVIMESDAQEVVSLMFGKKSTRTEIFWVVAEVHDQIKRL 128

Query: 185 KLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQIVG 223
           K       PR CN + ++LA     ++ +D   W+  I G
Sbjct: 129 KHVKVQYTPRNCNSVAHSLA--KLALELNDFVYWVDDIPG 166

BLAST of CaUC01G010340 vs. NCBI nr
Match: KAF5470601.1 (hypothetical protein F2P56_011105 [Juglans regia])

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-08
Identity = 51/208 (24.52%), Postives = 89/208 (42.79%), Query Frame = 0

Query: 14  EPMEKLNITGWLDGYRKPRFWAFEKENDDLLSQVELVGNEY---GGWVVVSVMWRHSSVQ 73
           E +  L +  W   YR+ +F        +LL       N Y        VS+  R  +++
Sbjct: 21  EKLSTLFVLAWGFWYRRNKF----VNEQELLVSERAAENAYVLLRSHAQVSIKTRSQTLK 80

Query: 74  --RWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEIS 133
             +W PP  G  KLNVD A      + G+G ++R + G+V++A +   +     E  E+ 
Sbjct: 81  HYKWHPPSAGCLKLNVDAAVFPEWDKAGVGPVLRDENGRVIMALSRAEIPMEGSEGIELL 140

Query: 134 TLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFS 193
            +  GL     +   ++ VES+  + +  L+  N  +S    +Y E   L + +    FS
Sbjct: 141 AIFRGLQQCATMGVSNIVVESDSLLSIDALNDDNMTNSMLGVLYYEIKKLATCFDACLFS 200

Query: 194 LVPRGCNIMVYNLAHQSCCVKYSDLHEW 217
            V R  N++ + LA  +   K   +  W
Sbjct: 201 HVYREGNMVAHKLARNA--FKIESMEVW 222

BLAST of CaUC01G010340 vs. NCBI nr
Match: XP_006471930.1 (uncharacterized protein LOC102617744 [Citrus sinensis])

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-08
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 0

Query: 65  RHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVA---QALFRLGCLN 124
           R  S QRW PP     KLNVD A +    ++GLG ++R   G+VV A   QA FR    +
Sbjct: 129 REESQQRWSPPPTNVLKLNVDAATNSKDQKVGLGAVLRDSNGRVVAAGIKQASFR---KD 188

Query: 125 VEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSS 184
           V   E   +  GL +A       L VE++ + V + +++T    S    I  E       
Sbjct: 189 VSFAEAEAIQWGLQIAKKAAAASLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKRE 248

Query: 185 WKLRTFSLVPRGCNIMVYNLA 203
           ++   F+ VPR CN   ++LA
Sbjct: 249 FQRIHFNFVPRFCNAHAHSLA 266

BLAST of CaUC01G010340 vs. ExPASy TrEMBL
Match: A0A803P8L6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 44/149 (29.53%), Postives = 72/149 (48.32%), Query Frame = 0

Query: 72  WFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLL 131
           W PP  G F +N D +  + Q   GLG +IR   G VVVA+ +F  GCL+V   E   + 
Sbjct: 824 WSPPPSGTFMINTDASLVVGQPGCGLGMVIRDHLGAVVVAETIFIPGCLSVNMAESLAIR 883

Query: 132 AGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVP 191
           +GL LA      ++ + S+ + V   L+  N   + +  +  + +    ++ L +F   P
Sbjct: 884 SGLKLADCWSLSNICISSDCQSVSHALNGDNHSITDWGLMVKDCIKAKENFNLVSFLFSP 943

Query: 192 RGCNIMVYNLAHQSCCVKYSDLHEWLSQI 221
           R CN +   LA  +   K S++  W S +
Sbjct: 944 RQCNKVANCLASWARLFKTSEV--WTSSM 970

BLAST of CaUC01G010340 vs. ExPASy TrEMBL
Match: A0A7J6EAV9 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_015240 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-08
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 0

Query: 69  VQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEIS 128
           +Q+W PP      +N D +   +    GL  +IR   G ++VA+ LF LG ++V   E++
Sbjct: 56  IQKWLPPPPSFVIINTDASLIQHSMGCGLSAVIRDHKGDLIVAETLFLLGLMSVHLAEVA 115

Query: 129 TLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFS 188
            +  G+ LAHN     + V S+   V+  L+ST+  SS +  +  E L L   +    FS
Sbjct: 116 AIRMGISLAHNKSIPKIIVASDCLGVINGLNSTSSTSSDWGLLIKEILPLQHHFISVQFS 175

Query: 189 LVPR 193
            +PR
Sbjct: 176 YIPR 179

BLAST of CaUC01G010340 vs. ExPASy TrEMBL
Match: A0A7J6HHY1 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002761 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 38/146 (26.03%), Postives = 71/146 (48.63%), Query Frame = 0

Query: 67  SSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGE 126
           S+   W PP +    +N D +    Q   GL  +IR D G ++VA+ +F  GCL+V+  E
Sbjct: 681 SASTTWQPPPKDLVIINTDASLVHGQEGCGLSAVIRDDKGSLIVAETMFIAGCLSVKLAE 740

Query: 127 ISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRT 186
            + +  GL LA        WV S+ ++++  + + +   + + ++      + S ++L  
Sbjct: 741 AAAIHLGLRLAERWSISKAWVASDSKVLITAIENGDSFPTDWGQLVQNINQMKSHFQLLH 800

Query: 187 FSLVPRGCNIMVYNLAHQSCCVKYSD 213
           F    R CN +  +LA +S   + S+
Sbjct: 801 FLFYSRNCNKVANSLAKRSRMTQKSE 826

BLAST of CaUC01G010340 vs. ExPASy TrEMBL
Match: A0A7J6I0M5 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_023029 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 38/146 (26.03%), Postives = 71/146 (48.63%), Query Frame = 0

Query: 67  SSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGE 126
           S+   W PP +    +N D +    Q   GL  +IR D G ++VA+ +F  GCL+V+  E
Sbjct: 455 SASTTWQPPPKDMVIINTDASLVQGQEGCGLSAVIRDDKGSLIVAETMFIAGCLSVKLAE 514

Query: 127 ISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRT 186
            + +  GL LA        WV S+ ++++  + + +   + + ++      + S ++L  
Sbjct: 515 AAAIQLGLRLAERWSISKAWVASDSKVLITAIENGDPFPTDWGQLVQNINHMKSHFQLLH 574

Query: 187 FSLVPRGCNIMVYNLAHQSCCVKYSD 213
           F    R CN +  +LA +S   + S+
Sbjct: 575 FLFYSRNCNKVANSLAKRSHMTQKSE 600

BLAST of CaUC01G010340 vs. ExPASy TrEMBL
Match: A0A803PF28 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.6e-08
Identity = 38/137 (27.74%), Postives = 64/137 (46.72%), Query Frame = 0

Query: 69   VQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEIS 128
            V +W PP      +N D +  + QS   L  +IR   G +VVA+A F  GC  V   E +
Sbjct: 1481 VMKWLPPPLDFCNINTDASLVVGQSGFSLSAVIRDSKGSLVVAEAEFTPGCTTVLQAEAA 1540

Query: 129  TLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFS 188
             +L GL LA         + S+   +++ +H  +   S + ++    + +  +++   F 
Sbjct: 1541 AILLGLKLAVRWAIFKAQICSDSHTIIQAIHHNSTNYSDWGKLIQRVMHMCDTFQCLEFL 1600

Query: 189  LVPRGCNIMVYNLAHQS 206
             VPR CN +  +LA  S
Sbjct: 1601 FVPRKCNTVANSLAKWS 1617

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030939647.12.1e-0829.75uncharacterized protein LOC115964488 [Quercus lobata][more]
XP_023873208.13.6e-0826.32uncharacterized protein LOC111985788 [Quercus suber][more]
XP_015380596.16.1e-0828.75uncharacterized protein LOC107174324 [Citrus sinensis][more]
KAF5470601.18.0e-0824.52hypothetical protein F2P56_011105 [Juglans regia][more]
XP_006471930.18.0e-0832.62uncharacterized protein LOC102617744 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803P8L62.3e-0829.53Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6EAV93.9e-0831.45RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_015240 PE=... [more]
A0A7J6HHY16.6e-0826.03RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002761 PE=... [more]
A0A7J6I0M56.6e-0826.03RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_023029 PE=... [more]
A0A803PF288.6e-0827.74Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 83..204
e-value: 3.3E-12
score: 46.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 80..209
e-value: 5.1E-6
score: 28.5
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 82..203
e-value: 2.11097E-10
score: 54.6276
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 80..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G010340.1CaUC01G010340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity