CaUC01G009460 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G009460
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReverse transcriptase domain-containing protein
LocationCiama_Chr01: 11676257 .. 11676634 (+)
RNA-Seq ExpressionCaUC01G009460
SyntenyCaUC01G009460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACTGCCAAAGGCTCATGGAAAGCCCGGTCTATCCTCCAACTATTGGTGGATCAACATGTTGTTGTTACCCTTGGAAATGGGCGTTCTATCTCCTTTTGGCTCGACACATGGGTAAGCACCCACCCCCCTTTACATATAGCCTTCCACAACTTATTTGCTCTTTCCCTTGCCAAGGAGGCCATGGTCTTCGAGCTATGGAACATGTTGGAGGGTGTTGGAATCTCCAACTTTGCAGGCATCTCAATGAATTGGAGACCGATGAATAGGCTGAGCTCTCACTTTTGCTTACCAATCATCAACCCGTACAATCCAATGCCAAGTGGTAGCTTGCTTACTTTTGCTTACCAATCATCAACCCCTACAATCCTATGA

mRNA sequence

ATGTCCACTGCCAAAGGCTCATGGAAAGCCCGGTCTATCCTCCAACTATTGGTGGATCAACATGTTGTTGTTACCCTTGGAAATGGGCGTTCTATCTCCTTTTGGCTCGACACATGGGTAAGCACCCACCCCCCTTTACATATAGCCTTCCACAACTTATTTGCTCTTTCCCTTGCCAAGGAGGCCATGGTCTTCGAGCTATGGAACATGTTGGAGGGTGTTGGAATCTCCAACTTTGCAGGCATCTCAATGAATTGGAGACCGATGAATAGGCTGAGCTCTCACTTTTGCTTACCAATCATCAACCCGTACAATCCAATGCCAAGTGGTAGCTTGCTTACTTTTGCTTACCAATCATCAACCCCTACAATCCTATGA

Coding sequence (CDS)

ATGTCCACTGCCAAAGGCTCATGGAAAGCCCGGTCTATCCTCCAACTATTGGTGGATCAACATGTTGTTGTTACCCTTGGAAATGGGCGTTCTATCTCCTTTTGGCTCGACACATGGGTAAGCACCCACCCCCCTTTACATATAGCCTTCCACAACTTATTTGCTCTTTCCCTTGCCAAGGAGGCCATGGTCTTCGAGCTATGGAACATGTTGGAGGGTGTTGGAATCTCCAACTTTGCAGGCATCTCAATGAATTGGAGACCGATGAATAGGCTGAGCTCTCACTTTTGCTTACCAATCATCAACCCGTACAATCCAATGCCAAGTGGTAGCTTGCTTACTTTTGCTTACCAATCATCAACCCCTACAATCCTATGA

Protein sequence

MSTAKGSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVGISNFAGISMNWRPMNRLSSHFCLPIINPYNPMPSGSLLTFAYQSSTPTIL
Homology
[Close]
BLAST of CaUC01G009460 vs. NCBI nr
Match: RVW39348.1 (Protein ORANGE, chloroplastic [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA   L  L    +   +GNG+ +SFW D W  T  PL ++F +LFAL++AKEA V 
Sbjct: 336 GLWKAIRKLSHLGSSRISFVVGNGQRVSFWKDKWCGT-SPLCVSFTSLFALAVAKEAWVS 395

Query: 66  ELWNM 71
           +LW +
Sbjct: 396 DLWTV 399

[Close]
BLAST of CaUC01G009460 vs. NCBI nr
Match: RVW37518.1 (hypothetical protein CK203_073960 [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-05
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA  +L  LV    +  +GNGR + FW D W     PL ++F +LFAL+  KE  V 
Sbjct: 442 GLWKAIRLLWELVSSRTLFVVGNGRRVKFWRDRWCGDE-PLCVSFPSLFALACLKEVWVA 501

Query: 66  ELW-NMLEGVGISNFAGISMN 86
           +LW +  EG G +     S+N
Sbjct: 502 DLWVHYSEGGGWNPSFSRSLN 521

[Close]
BLAST of CaUC01G009460 vs. NCBI nr
Match: RVW81807.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-05
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA     L +   +   +GNGR + FW D W   H PL+ +F +LFA+S AK+A V 
Sbjct: 217 GLWKAIRKEWLGMYNSLAFRVGNGRRVRFWKDKWCG-HEPLYESFPSLFAISRAKDAWVS 276

Query: 66  ELWNMLEGVG 76
           E+WN  +GVG
Sbjct: 277 EVWNP-DGVG 284

[Close]
BLAST of CaUC01G009460 vs. NCBI nr
Match: RVW94842.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 7.9e-05
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WK       +V   +V  +GNG+ I FW D W     PL ++F +LFAL+++K+A V 
Sbjct: 127 GLWKTLRKEWEVVKSRLVFVVGNGKRIKFWKDIWCGDE-PLCVSFPSLFALAVSKDAWVK 186

Query: 66  ELWNMLEGVG 76
           ++W   EGVG
Sbjct: 187 DVWRCNEGVG 195

[Close]
BLAST of CaUC01G009460 vs. NCBI nr
Match: RVW43414.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 7.9e-05
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA  +   LV + +  ++GNGR +SFW D W     PL  +F +++ALS+ KEA V 
Sbjct: 104 GLWKAIRMDWDLVGERISFSVGNGRRVSFWRDRWCG-DAPLCDSFPSIYALSIEKEAWVA 163

Query: 66  ELWNMLEGVG 76
           ++W+ L  +G
Sbjct: 164 DVWDPLRVIG 172

[Close]
BLAST of CaUC01G009460 vs. ExPASy TrEMBL
Match: A0A438DVP2 (Protein ORANGE, chloroplastic OS=Vitis vinifera OX=29760 GN=OR_2 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-06
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA   L  L    +   +GNG+ +SFW D W  T  PL ++F +LFAL++AKEA V 
Sbjct: 336 GLWKAIRKLSHLGSSRISFVVGNGQRVSFWKDKWCGT-SPLCVSFTSLFALAVAKEAWVS 395

Query: 66  ELWNM 71
           +LW +
Sbjct: 396 DLWTV 399

[Close]
BLAST of CaUC01G009460 vs. ExPASy TrEMBL
Match: A0A438HBJ9 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1235 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA     L +   +   +GNGR + FW D W   H PL+ +F +LFA+S AK+A V 
Sbjct: 217 GLWKAIRKEWLGMYNSLAFRVGNGRRVRFWKDKWCG-HEPLYESFPSLFAISRAKDAWVS 276

Query: 66  ELWNMLEGVG 76
           E+WN  +GVG
Sbjct: 277 EVWNP-DGVG 284

[Close]
BLAST of CaUC01G009460 vs. ExPASy TrEMBL
Match: A0A438DPV9 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_073960 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA  +L  LV    +  +GNGR + FW D W     PL ++F +LFAL+  KE  V 
Sbjct: 442 GLWKAIRLLWELVSSRTLFVVGNGRRVKFWRDRWCGDE-PLCVSFPSLFALACLKEVWVA 501

Query: 66  ELW-NMLEGVGISNFAGISMN 86
           +LW +  EG G +     S+N
Sbjct: 502 DLWVHYSEGGGWNPSFSRSLN 521

[Close]
BLAST of CaUC01G009460 vs. ExPASy TrEMBL
Match: A0A438E707 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_562 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WKA  +   LV + +  ++GNGR +SFW D W     PL  +F +++ALS+ KEA V 
Sbjct: 104 GLWKAIRMDWDLVGERISFSVGNGRRVSFWRDRWCG-DAPLCDSFPSIYALSIEKEAWVA 163

Query: 66  ELWNMLEGVG 76
           ++W+ L  +G
Sbjct: 164 DVWDPLRVIG 172

[Close]
BLAST of CaUC01G009460 vs. ExPASy TrEMBL
Match: A0A438IDN6 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_543 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 6   GSWKARSILQLLVDQHVVVTLGNGRSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVF 65
           G WK       +V   +V  +GNG+ I FW D W     PL ++F +LFAL+++K+A V 
Sbjct: 127 GLWKTLRKEWEVVKSRLVFVVGNGKRIKFWKDIWCGDE-PLCVSFPSLFALAVSKDAWVK 186

Query: 66  ELWNMLEGVG 76
           ++W   EGVG
Sbjct: 187 DVWRCNEGVG 195

The following BLAST results are available for this feature:
BLAST of CaUC01G009460 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW39348.11.6e-0544.62Protein ORANGE, chloroplastic [Vitis vinifera][more]
RVW37518.16.1e-0539.51hypothetical protein CK203_073960 [Vitis vinifera][more]
RVW81807.16.1e-0544.29putative ribonuclease H protein [Vitis vinifera][more]
RVW94842.17.9e-0540.00putative ribonuclease H protein [Vitis vinifera][more]
RVW43414.17.9e-0540.00putative ribonuclease H protein [Vitis vinifera][more]
BLAST of CaUC01G009460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G009460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438DVP27.7e-0644.62Protein ORANGE, chloroplastic OS=Vitis vinifera OX=29760 GN=OR_2 PE=4 SV=1[more]
A0A438HBJ92.9e-0544.29Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1235 ... [more]
A0A438DPV92.9e-0539.51Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK... [more]
A0A438E7073.8e-0540.00Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_562 P... [more]
A0A438IDN63.8e-0540.00Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_543 P... [more]
BLAST of CaUC01G009460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G009460.1CaUC01G009460.1mRNA