CaUC01G007510 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G007510
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	MATH domain and coiled-coil domain-containing protein
Location	Ciama_Chr01: 8589081 .. 8590679 (+)
RNA-Seq Expression	CaUC01G007510
Synteny	CaUC01G007510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGGGTATTTTTGTTTTTGTGATTGTAGGAAATTAGCTCTGTATCCCAATGGAGATGAGAGAAGAAATGTTTCTAATCACATTTCCCTCTATTTGGTAATGGTTGGGGATAACATTTTATCAACTACTTCAGAAGTTAATGTTGTGTTTACTTTTCTTGTTTATGATAGTCTCAGAGGCAAATATTTGACAGTCCAAGGTAATCAAACTACTCAAAAAAATTTCTCTTAAGCTTTGTTTGTGGTTTTGTTGGTTTTACTTGAAGGGTTTTATGTTAATGTAAATTTTGAGCTGTAAATTATGGCTACTTATTAGGCCAGACTTTCCTTATTTTGTTCTATCAATTGTGTATAAACTCAATTGTAATTCTCCCCTGTAAAATAGAACATTGATTCATCCAATGATACAAAAGAATATAGTTTGTTTCATCCTTGTACTATTGTGTCGTGTCATGGATGAATTCAGATGGGAAAATGAGACGATTTAGTGCAATGAAGACAGAGTGGGGGATTGAAAAGTTCCTTCCACTTGACACTTTCAATGATGCTTCAAATGGTTTCTTGGTTGATGATTGTTGTGTATTTGGAGTTGACATTTTTGTCATGAATTGTGATGGCGGGAAGGGGGAGATCTTTTCCTTGATCAAACAGCCAAATAATTACAAATATACATGGAAACTCAACAACTTTTCACAACTAGATACAACTTTGAAGGAATCTGATCTCTTTACAGTGGAGAGCTACCATTGGTATGATAACTTTTGATTTTGCAGTGGGTTTTTGCATCAAGAAAGTTGTGTATATGTATATTTACATAATATATTTATCTTTCAGGAAGATACGTTTGTATCCTAGTGGAGATTCGCAAGCGAAACCAGGCTTCTTGTCCATGTTCCTGATGTTCGATGGTTCAAATGAGCTTCCACAAGGTTCTCAACTGTACGTAGAATATGAGATGGCCGTATTGAGTCATCTTGAAGCTGAGCCAGTAAAAAGAACTTGTAATGAACTGCTATTAGCTTTCCTAAATCAGTTTCTTTAAGTAGAGTGAGTTTGGGATGATGGACTTTCGTTTTGAAAGCACTATCTTTCTTTTTTGTGCAGTTGATTGTTGGTTTGGATTTGGCGGTATGAAAGTTGGCAGAGGCTGGGGTGCGGCAGACTTCTCGTCATTGAGTGATCTCAAAGAACCAACGAAAGGATATCTGCCGAATGACACTCTAGTTGTTGAAGTGAAAATTAATGTCATCTCTACCTTAAAGAAAATTATATAGAAAACAAATACTGCTCCTTTCAGTTTGGTAACATTTAGGCTGTGACTTCCAGGTTTTGCCTGTTCTTTTTTGTGGTTAAATGTGTGGGATTTCTTGTTCAATGTTGCATGCTTCTACAGTTTTGAAGTATATTTTATAGCAAAATGTTATTATGTTCTTGTTTGTTACAAAATTTATCTTTAAAGGTGTGTGGAGTGTTGATTTAATTATTATAGTTGGTGAGTTATAATAGTTAGTGTCTATAGCAAAGAAGAAAATAGACCAAAAGGGTTTTAAAATAGTATTTTTATATTATTTTTAGTGTAACAATGGTGTGAAATAG

mRNA sequence

ATGATAGGGTCTCAGAGGCAAATATTTGACAGTCCAAGGAAGATACGTTTGTATCCTAGTGGAGATTCGCAAGCGAAACCAGGCTTCTTGTCCATGTTCCTGATGTTCGATGGTTCAAATGAGCTTCCACAAGGTTCTCAACTGTACGTAGAATATGAGATGGCCGTATTGAGTCATCTTGAAGCTGAGCCATTGATTGTTGGTTTGGATTTGGCGTGTAACAATGGTGTGAAATAG

Coding sequence (CDS)

ATGATAGGGTCTCAGAGGCAAATATTTGACAGTCCAAGGAAGATACGTTTGTATCCTAGTGGAGATTCGCAAGCGAAACCAGGCTTCTTGTCCATGTTCCTGATGTTCGATGGTTCAAATGAGCTTCCACAAGGTTCTCAACTGTACGTAGAATATGAGATGGCCGTATTGAGTCATCTTGAAGCTGAGCCATTGATTGTTGGTTTGGATTTGGCGTGTAACAATGGTGTGAAATAG

Protein sequence

MIGSQRQIFDSPRKIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEPLIVGLDLACNNGVK

Homology

[Close]

BLAST of CaUC01G007510 vs. NCBI nr
Match: XP_038875772.1 (uncharacterized protein LOC120068142 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEPL 66
           KI LYPSG S+AK GFLSM+L+FD SN+LPQGSQ+YVEYEMA+LS LEA P+
Sbjct: 223 KILLYPSGCSKAKSGFLSMYLLFDSSNQLPQGSQVYVEYEMAILSQLEAVPV 274

[Close]

BLAST of CaUC01G007510 vs. NCBI nr
Match: XP_031742213.1 (MATH domain and coiled-coil domain-containing protein At3g58340 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEPLI 67
           KIRL+PSGD QAKPGF SM+LM     E PQG+Q+YVEYEMAVLS LE  P I
Sbjct: 129 KIRLFPSGDLQAKPGFFSMYLMLTNLKEFPQGAQVYVEYEMAVLSQLEDVPPI 181

[Close]

BLAST of CaUC01G007510 vs. NCBI nr
Match: KAE8648447.1 (hypothetical protein Csa_008888 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEPLI 67
           KIRL+PSGD QAKPGF SM+LM     E PQG+Q+YVEYEMAVLS LE  P I
Sbjct: 226 KIRLFPSGDLQAKPGFFSMYLMLTNLKEFPQGAQVYVEYEMAVLSQLEDVPPI 278

[Close]

BLAST of CaUC01G007510 vs. NCBI nr
Match: TYJ98189.1 (MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEP 65
           KIRL+PSGD QAKPGF SM+LM       P+G+Q+YVEYEMAVLS LEA P
Sbjct: 255 KIRLFPSGDWQAKPGFFSMYLMLSNLIAHPKGAQVYVEYEMAVLSQLEAVP 305

[Close]

BLAST of CaUC01G007510 vs. NCBI nr
Match: XP_008465935.1 (PREDICTED: uncharacterized protein LOC103503506 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEP 65
           KIRL+PSGD QAKPGF SM+LM       P+G+Q+YVEYEMAVLS LEA P
Sbjct: 231 KIRLFPSGDWQAKPGFFSMYLMLSNLIAHPKGAQVYVEYEMAVLSQLEAVP 281

[Close]

BLAST of CaUC01G007510 vs. ExPASy TrEMBL
Match: A0A0A0KND8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G432550 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.5e-11
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEPLI 67
           KIRL+PSGD QAKPGF SM+LM     E PQG+Q+YVEYEMAVLS LE  P I
Sbjct: 226 KIRLFPSGDLQAKPGFFSMYLMLTNLKEFPQGAQVYVEYEMAVLSQLEDVPPI 278

[Close]

BLAST of CaUC01G007510 vs. ExPASy TrEMBL
Match: A0A5D3BGM0 (MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00770 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEP 65
           KIRL+PSGD QAKPGF SM+LM       P+G+Q+YVEYEMAVLS LEA P
Sbjct: 255 KIRLFPSGDWQAKPGFFSMYLMLSNLIAHPKGAQVYVEYEMAVLSQLEAVP 305

[Close]

BLAST of CaUC01G007510 vs. ExPASy TrEMBL
Match: A0A5A7U9P8 (MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00550 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEP 65
           KIRL+PSGD QAKPGF SM+LM       P+G+Q+YVEYEMAVLS LEA P
Sbjct: 255 KIRLFPSGDWQAKPGFFSMYLMLSNLIAHPKGAQVYVEYEMAVLSQLEAVP 305

[Close]

BLAST of CaUC01G007510 vs. ExPASy TrEMBL
Match: A0A1S3CQ20 (uncharacterized protein LOC103503506 OS=Cucumis melo OX=3656 GN=LOC103503506 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEP 65
           KIRL+PSGD QAKPGF SM+LM       P+G+Q+YVEYEMAVLS LEA P
Sbjct: 231 KIRLFPSGDWQAKPGFFSMYLMLSNLIAHPKGAQVYVEYEMAVLSQLEAVP 281

[Close]

BLAST of CaUC01G007510 vs. ExPASy TrEMBL
Match: A0A6J1CXZ0 (ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=LOC111015607 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14  KIRLYPSGDSQAKPGFLSMFLMFDGSNELPQGSQLYVEYEMAVLSHLEAEP 65
           K+ LYP G S A+ GFLS++L+ D S E+ QGS++YVEYE+A+LS L AEP
Sbjct: 179 KLWLYPKGCSNAETGFLSLYLILDSSKEILQGSKVYVEYELALLSQLGAEP 229

The following BLAST results are available for this feature:

BLAST of CaUC01G007510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875772.1	1.4e-12	75.00	uncharacterized protein LOC120068142 [Benincasa hispida]	[more]
XP_031742213.1	1.3e-10	69.81	MATH domain and coiled-coil domain-containing protein At3g58340 [Cucumis sativus...	[more]
KAE8648447.1	1.3e-10	69.81	hypothetical protein Csa_008888 [Cucumis sativus]	[more]
TYJ98189.1	2.5e-09	68.63	MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_008465935.1	2.5e-09	68.63	PREDICTED: uncharacterized protein LOC103503506 [Cucumis melo]	[more]

BLAST of CaUC01G007510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC01G007510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KND8	6.5e-11	69.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G432550 PE=4 SV=1	[more]
A0A5D3BGM0	1.2e-09	68.63	MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuw...	[more]
A0A5A7U9P8	1.2e-09	68.63	MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuw...	[more]
A0A1S3CQ20	1.2e-09	68.63	uncharacterized protein LOC103503506 OS=Cucumis melo OX=3656 GN=LOC103503506 PE=...	[more]
A0A6J1CXZ0	2.0e-07	58.82	ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of CaUC01G007510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008974	TRAF-like	GENE3D	2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	coord: 3..70 e-value: 5.0E-6 score: 28.4
IPR002083	MATH/TRAF domain	CDD	cd00121	MATH	coord: 14..67 e-value: 4.77722E-5 score: 36.5883
None	No IPR available	SUPERFAMILY	49599	TRAF domain-like	coord: 14..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G007510.1	CaUC01G007510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005515	protein binding