CaUC01G000570 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTCCAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGACCGAGACGGTGAAGATGAAGGAGTTGATATAAAAGAAGCGACCGGCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGA ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTCCAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGACCGAGACGGTGAAGATGAAGGAGTTGATATAAAAGAAGCGACCGGCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGA ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTCCAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGACCGAGACGGTGAAGATGAAGGAGTTGATATAAAAGAAGCGACCGGCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGA MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDDRDGEDEGVDIKEATGEVGGPKGPEPTRYGDWERNGRCYDF Homology
BLAST of CaUC01G000570 vs. NCBI nr
Match: KGN49871.1 (hypothetical protein Csa_000062 [Cucumis sativus]) HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39 Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0
BLAST of CaUC01G000570 vs. NCBI nr
Match: KAA0042555.1 (succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa] >TYK05959.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa]) HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38 Identity = 90/111 (81.08%), Postives = 97/111 (87.39%), Query Frame = 0
BLAST of CaUC01G000570 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]) HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38 Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 0
BLAST of CaUC01G000570 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]) HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37 Identity = 89/111 (80.18%), Postives = 99/111 (89.19%), Query Frame = 0
BLAST of CaUC01G000570 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 165.6 bits (418), Expect = 2.4e-37 Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy Swiss-Prot
Match: Q8BTE0 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 6.0e-07 Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy Swiss-Prot
Match: Q9VLU6 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 7.8e-07 Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy Swiss-Prot
Match: Q5VUM1 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06 Identity = 35/80 (43.75%), Postives = 44/80 (55.00%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy Swiss-Prot
Match: Q54Y25 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278459 PE=3 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05 Identity = 34/113 (30.09%), Postives = 60/113 (53.10%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy TrEMBL
Match: A0A0A0KQ66 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=3 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 5.6e-40 Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy TrEMBL
Match: A0A5A7TMD3 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00530 PE=3 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38 Identity = 90/111 (81.08%), Postives = 97/111 (87.39%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy TrEMBL
Match: A0A6J1K722 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491251 PE=3 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38 Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy TrEMBL
Match: A0A6J1H1T7 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111459345 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 5.2e-38 Identity = 89/111 (80.18%), Postives = 99/111 (89.19%), Query Frame = 0
BLAST of CaUC01G000570 vs. ExPASy TrEMBL
Match: W9RP47 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Morus notabilis OX=981085 GN=L484_000138 PE=3 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16 Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = 0
BLAST of CaUC01G000570 vs. TAIR 10
Match: AT5G67490.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07 Identity = 32/85 (37.65%), Postives = 44/85 (51.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|