CaUC01G000020 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GACCCCCACATATTTCTTTGCAACCTAGCAAGATCATATTTATTTGTCTTAAATAATAGATTTCCAAACATGCAAATAGACATTTACACTTTAATATAAAAGTCATTCAAAATCCGGAACAGTCTTGAACAGGCAAAAGAAAAGGAAAAAAGAAAAAGAGAAAAAAAAACGTCTGAGAAGGTTTTTTTTATATTAGGGTTAGCTTGGGATTGTAGAATTAAATAAGAACAAATGAAATATATATTTGTTATCCATCCACCGCTTTGTTGATCCGGCTCCAAGCTTCAGGTTTTCTGCGAAACTAACGGTTGCCGGAGTGAGGATAGAGGAGAGGAAGAGGAACCGAAAAGAGATAGAGGCTCCATCCAGTTGACTTTACTTATCATAGATGGAGCAGGGGAAACAGGGAGTGGTAGTTAAATTCACTCCTCCTCAGAACCCTGTGGAGCAAATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGAACGTGGTTGGCCAAGCAGTCTCTCCCTGTTGAGGCCGCCGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGATGTTTCTTCTTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGTGTGACTCTGCTTCTTCCTGTTCCTTGTTTTGTTACATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCGAACGACATCATACAGACAGAAGGATTTTGCCCCCGATTGAAAACCACCTCATTTCCGAAATTCAGTTCTTCAATGAACAAACACGATTTTATGGAATTTGGGTACCTAATTCTTTTGGTTTTCTTTGAAATTGTAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGGTAAGGTTTTACGACTGCCCCGCTGTTTCCTTCTCCTGATTGATAATTTGACCTATCATCAGGCTTTGCATTCCCTGGCTTTGTTAAGTTCATTTTACTTTTTTAATGCGAAATTAATTTTGTTGAAGAAATGAAATTATGAAAGAGGGATAGAAAAGCCAAGCTCTTGTGTCTGTCTTTATAATTTTTCTGTTTAAGGAAGAAAGGATAAATCTCTTCCAAGTAGCACAAAGAATACTAAGGTCGCAGTTAAAAATGGTGATTAAGTTTGCATCAAGGCCACAAAGATGAGAAAATCGAAAAGTTTCCATTGTTCATTCAATGATTAAGTGCCAAAAGAAGGCTTTTACATGCTGCAACCAAAGGATGGTCCTTATGTTTTTAGAACCAAGGACAGAATTATACAACTTACGGAAGAGATCATATTCAAGTAAGGTAGTCCAAATGAGGTTCCTTTTGGAGATCAAATCTTTTAGTTTGAGAACAGACCACTTATATCAAGAAAATTGAACTGTTTTTCAATTACCCTATGGTGGCTCCCTTGTTTTTGTTCCTCCTCATCAATCTTTGTAGGGAGAGTAAGGAGAAAAACCCTAAATGCAAACTCTTTATGCCTCCTGCAACTAGTATGAGGGCAGATCCTTTGAGGAGTAGGCATAGGACCTGATACCACATGTAGTAAAGAAGACAAAAAAAGAAGAGATTTGAAAAAATGAATGGAATATCACATTTATTAAAGAAGAATTATCTTATCCCAGTCATAAATGCAAACTCTGCCTCCTGCAACTAGTATAAGGCCAGACCCCTTGAGGAGTAGGCATAGGACCTGATACCACATGTATTAAATTAAAGAAGAAAAAAAAGAATAGAATGTAAATATTAAGATTTGATTAAATGACTGGATAAGGTAATTCCACCCTAGAGAGTTCTAGTATGCTTTTTTAGATGTTTAGTGCTGTTTGGCGACCCAAAGAGTATAGCTCTATAGTGAAGGAGTTTCTTTTTCATTCACCCTTTCATCATAAAAGGTTGATTTCTTCAAAATGACACCAAGTTTTGTGTAGTTGTATGGAGCATTTTGGTCAAGAGTTCTTGGAAGAACGCTTAGTCATTGTGTTAGGTTTCATGTTTTCGGTATATAAGGATTTTTGTAATTACCCTGTAAGTCTTAATTTTTTAGATTCGAGCCCTTTTGTTTTAGACTTTTAGTTCAGCGCATTTTCCTAGGTTGTTTGAATTCCCCTTCTATTCTTTTCTTTCTTGTGGAAGCATGGTTTCTCAAACATTGCAACTAGCTTACTAACCTACATTTCTTGGTTCCAATTATTTTATCAAACCAGCCAAATATCCTTTAGAGTTTGAACTTATTGGCTCTTAGAGAGAGAGTATGCAAGTTGGAATGTGCTTTCCAAACCCTTGGATCTCGGAGACTTGGGAATGGGTAGCATGAGGCTTTAGAATGGATCTCTTTTGGCGAAGTCCTTTGTAACGCCTCTATTTAGGCATTAGTCTCTAAAGGTTTTGTTTAATTATCCATTAATTCTTATTATTAGGGGTTGAAGGTTTCTTCCTTTTTTTTTTCTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATGGCTAGTTGTTTGGCTTTGGAGTAAATTGTTTTTTGTATGCACGTGGACAGTTTGTTTTGTATTTCATTTCTTCACCATGAAAGCTTGGTTTCTCATAAAAACAAAATATTAAGATGGATGAACTAATTTTATGGAGGCCCATGAGAAATGTCAAAGGGCTTTACAATATTCGGTTGTTTTCTTTTAACATTGTATGGAGAGGATAAGAAGTTCTTTATAACAATCTAGTATCCAATTAGTAATGTATGTATTTATTCTCTCTTTTTTTTCCCTTTAGTATAATATATGTACTTATTCTTGCATCATATAATCGTGGGAAAAGAGTGAAGATTCCTATGTGGATAATCTTGTACACGGTTATAGTCCTTTGATGTACGTAGACTCTCTTTTATGTTTCTTGTAGCCGACAAATTTAAATTTGGTTCCATGTTTCATGTACTGACTTGTCCTTAGAATGTATTTCTGGTTCAAGATGCGGTCTTCTATTTTATGGTGTATTACCTTTTAGTTATTTTATGCGTTGCTGGCTTGTTTCCTGAAATTTGGCTAGTACAATTTGACTTGTTATTACAGCATGGTGGCTGCTTTTGGGTCTGGGGCTATGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCAGCAAACGCTGTTACCTCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGGTGTGCATCAATAGCAACTATTTTATTATTGCAAAACTTGCTGATAGCAGTCCTTTTGTTTTGATAATTTTGAAGCATTTCAAGCGTTCTTCTGTCTTGAAAGTCTTCGGCTATTCCTTTGTCCTGAGTCATATGTGAGAATTTCAATCATCTAAGCACAGGATGGTGAAGATATGGAATTATTAGATTAGAATTCACTTTGAAATATTCTGGTACAGCTCTAACAAAATTTTTGGAACGGGCTCTACTTTCTACTTCACATTTATATTGTAAGTGGTTTTACGATTTTATCTTGGGGCACTTGCTTTAGAGTTAATGCTGTTTTGCAGTTAGGGGAAAAATTTTCTCAACCACCTGTGGAAGATATGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATACCACTTTGCCTCTGCTCACTGACAGGCATGTAAATTGA GACCCCCACATATTTCTTTGCAACCTAGCAAGATCATATTTATTTGTCTTAAATAATAGATTTCCAAACATGCAAATAGACATTTACACTTTAATATAAAAGTCATTCAAAATCCGGAACAGTCTTGAACAGGCAAAAGAAAAGGAAAAAAGAAAAAGAGAAAAAAAAACGTCTGAGAAGGTTTTTTTTATATTAGGGTTAGCTTGGGATTGTAGAATTAAATAAGAACAAATGAAATATATATTTGTTATCCATCCACCGCTTTGTTGATCCGGCTCCAAGCTTCAGGTTTTCTGCGAAACTAACGGTTGCCGGAGTGAGGATAGAGGAGAGGAAGAGGAACCGAAAAGAGATAGAGGCTCCATCCAGTTGACTTTACTTATCATAGATGGAGCAGGGGAAACAGGGAGTGGTAGTTAAATTCACTCCTCCTCAGAACCCTGTGGAGCAAATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGAACGTGGTTGGCCAAGCAGTCTCTCCCTGTTGAGGCCGCCGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGATGTTTCTTCTTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGCATGGTGGCTGCTTTTGGGTCTGGGGCTATGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCAGCAAACGCTGTTACCTCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGGTGTGCATCAATAGCAACTATTTTATTATTGCAAAACTTGCTGATAGCAGTCCTTTTGTTTTGATAATTTTGAAGCATTTCAAGCGTTCTTCTGTCTTGAAAGTCTTCGGCTATTCCTTTGTCCTGAGTCATATAGTTAATGCTGTTTTGCAGTTAGGGGAAAAATTTTCTCAACCACCTGTGGAAGATATGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATACCACTTTGCCTCTGCTCACTGACAGGCATGTAAATTGA ATGGAGCAGGGGAAACAGGGAGTGGTAGTTAAATTCACTCCTCCTCAGAACCCTGTGGAGCAAATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGAACGTGGTTGGCCAAGCAGTCTCTCCCTGTTGAGGCCGCCGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGATGTTTCTTCTTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGCATGGTGGCTGCTTTTGGGTCTGGGGCTATGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCAGCAAACGCTGTTACCTCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGGTGTGCATCAATAGCAACTATTTTATTATTGCAAAACTTGCTGATAGCAGTCCTTTTGTTTTGATAATTTTGAAGCATTTCAAGCGTTCTTCTGTCTTGAAAGTCTTCGGCTATTCCTTTGTCCTGAGTCATATAGTTAATGCTGTTTTGCAGTTAGGGGAAAAATTTTCTCAACCACCTGTGGAAGATATGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATACCACTTTGCCTCTGCTCACTGACAGGCATGTAAATTGA MEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAIGGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKVCINSNYFIIAKLADSSPFVLIILKHFKRSSVLKVFGYSFVLSHIVNAVLQLGEKFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN Homology
BLAST of CaUC01G000020 vs. NCBI nr
Match: KAA0042522.1 (mitochondrial import inner membrane translocase subunit TIM22-like [Cucumis melo var. makuwa]) HSP 1 Score: 404.1 bits (1037), Expect = 1.0e-108 Identity = 222/277 (80.14%), Postives = 224/277 (80.87%), Query Frame = 0
BLAST of CaUC01G000020 vs. NCBI nr
Match: XP_038876132.1 (chloroplastic import inner membrane translocase subunit HP30-2-like [Benincasa hispida]) HSP 1 Score: 399.8 bits (1026), Expect = 1.9e-107 Identity = 221/275 (80.36%), Postives = 222/275 (80.73%), Query Frame = 0
BLAST of CaUC01G000020 vs. NCBI nr
Match: XP_008437651.1 (PREDICTED: uncharacterized protein LOC103482996 [Cucumis melo] >TYK05925.1 mitochondrial import inner membrane translocase subunit TIM22-like [Cucumis melo var. makuwa]) HSP 1 Score: 398.7 bits (1023), Expect = 4.2e-107 Identity = 220/275 (80.00%), Postives = 222/275 (80.73%), Query Frame = 0
BLAST of CaUC01G000020 vs. NCBI nr
Match: XP_004145954.1 (chloroplastic import inner membrane translocase subunit HP30-2 [Cucumis sativus] >KGN49557.2 hypothetical protein Csa_000034 [Cucumis sativus]) HSP 1 Score: 394.0 bits (1011), Expect = 1.0e-105 Identity = 219/275 (79.64%), Postives = 220/275 (80.00%), Query Frame = 0
BLAST of CaUC01G000020 vs. NCBI nr
Match: XP_022974359.1 (uncharacterized protein LOC111472988 [Cucurbita maxima]) HSP 1 Score: 383.3 bits (983), Expect = 1.8e-102 Identity = 209/275 (76.00%), Postives = 217/275 (78.91%), Query Frame = 0
BLAST of CaUC01G000020 vs. ExPASy Swiss-Prot
Match: Q9FLT9 (Chloroplastic import inner membrane translocase subunit HP30-2 OS=Arabidopsis thaliana OX=3702 GN=HP30-2 PE=1 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 5.3e-60 Identity = 135/260 (51.92%), Postives = 162/260 (62.31%), Query Frame = 0
BLAST of CaUC01G000020 vs. ExPASy Swiss-Prot
Match: Q9SCK3 (Chloroplastic import inner membrane translocase subunit HP30-1 OS=Arabidopsis thaliana OX=3702 GN=HP30-1 PE=1 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 1.7e-58 Identity = 132/264 (50.00%), Postives = 164/264 (62.12%), Query Frame = 0
BLAST of CaUC01G000020 vs. ExPASy TrEMBL
Match: A0A5A7TGI2 (Mitochondrial import inner membrane translocase subunit TIM22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00150 PE=4 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 4.9e-109 Identity = 222/277 (80.14%), Postives = 224/277 (80.87%), Query Frame = 0
BLAST of CaUC01G000020 vs. ExPASy TrEMBL
Match: A0A0A0KJR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139080 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 8.3e-109 Identity = 223/279 (79.93%), Postives = 224/279 (80.29%), Query Frame = 0
BLAST of CaUC01G000020 vs. ExPASy TrEMBL
Match: A0A5D3C3H2 (Mitochondrial import inner membrane translocase subunit TIM22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00170 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 2.0e-107 Identity = 220/275 (80.00%), Postives = 222/275 (80.73%), Query Frame = 0
BLAST of CaUC01G000020 vs. ExPASy TrEMBL
Match: A0A1S3AV59 (uncharacterized protein LOC103482996 OS=Cucumis melo OX=3656 GN=LOC103482996 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 2.0e-107 Identity = 220/275 (80.00%), Postives = 222/275 (80.73%), Query Frame = 0
BLAST of CaUC01G000020 vs. ExPASy TrEMBL
Match: A0A6J1IHD8 (uncharacterized protein LOC111472988 OS=Cucurbita maxima OX=3661 GN=LOC111472988 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 8.9e-103 Identity = 209/275 (76.00%), Postives = 217/275 (78.91%), Query Frame = 0
BLAST of CaUC01G000020 vs. TAIR 10
Match: AT5G24650.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein ) HSP 1 Score: 232.6 bits (592), Expect = 3.7e-61 Identity = 135/260 (51.92%), Postives = 162/260 (62.31%), Query Frame = 0
BLAST of CaUC01G000020 vs. TAIR 10
Match: AT3G49560.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein ) HSP 1 Score: 227.6 bits (579), Expect = 1.2e-59 Identity = 132/264 (50.00%), Postives = 164/264 (62.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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