CSPI07G08890 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08890
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 6713883 .. 6714110 (-)
RNA-Seq Expression	CSPI07G08890
Synteny	CSPI07G08890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGACGAAACGATGACGACGAGATGGTGGCCACAGACGAGGAGGAGACAAGATGGATGGATGGCTGGTGAAATGCTGGAAGGGGTGACGCTTAGCTCCAAAGGACGACACTTGGGCTTGGGTGAGGCGAACGGTGAGGCGAACGGTGAGTCGTCGACGGTGGTCAACGAACGACGAACAAAGACGGAACAACTAGGGCGGCGACGGGTAGGGTTCTTTGAATGA

mRNA sequence

ATGGTTGACGAAACGATGACGACGAGATGGTGGCCACAGACGAGGAGGAGACAAGATGGATGGATGGCTGGTGAAATGCTGGAAGGGGTGACGCTTAGCTCCAAAGGACGACACTTGGGCTTGGGTGAGGCGAACGGTGAGGCGAACGGTGAGTCGTCGACGGTGGTCAACGAACGACGAACAAAGACGGAACAACTAGGGCGGCGACGGGTAGGGTTCTTTGAATGA

Coding sequence (CDS)

ATGGTTGACGAAACGATGACGACGAGATGGTGGCCACAGACGAGGAGGAGACAAGATGGATGGATGGCTGGTGAAATGCTGGAAGGGGTGACGCTTAGCTCCAAAGGACGACACTTGGGCTTGGGTGAGGCGAACGGTGAGGCGAACGGTGAGTCGTCGACGGTGGTCAACGAACGACGAACAAAGACGGAACAACTAGGGCGGCGACGGGTAGGGTTCTTTGAATGA

Protein sequence

MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGEANGESSTVVNERRTKTEQLGRRRVGFFE*

Homology

[Close]

BLAST of CSPI07G08890 vs. ExPASy TrEMBL
Match: A0A0A0K8G3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169080 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.2e-31
Identity = 71/75 (94.67%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGEANGESSTVVNERR 60
          MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGL    GEANGESSTVVNERR
Sbjct: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGL----GEANGESSTVVNERR 60

Query: 61 TKTEQLGRRRVGFFE 76
          TKTEQLGRRRVGFFE
Sbjct: 61 TKTEQLGRRRVGFFE 71

[Close]

BLAST of CSPI07G08890 vs. NCBI nr
Match: KGN44076.1 (hypothetical protein Csa_020281 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 71/75 (94.67%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGLGEANGEANGESSTVVNERR 60
          MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGL    GEANGESSTVVNERR
Sbjct: 1  MVDETMTTRWWPQTRRRQDGWMAGEMLEGVTLSSKGRHLGL----GEANGESSTVVNERR 60

Query: 61 TKTEQLGRRRVGFFE 76
          TKTEQLGRRRVGFFE
Sbjct: 61 TKTEQLGRRRVGFFE 71

The following BLAST results are available for this feature:

BLAST of CSPI07G08890 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G08890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8G3	7.2e-31	94.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169080 PE=4 SV=1	[more]

BLAST of CSPI07G08890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44076.1	1.5e-30	94.67	hypothetical protein Csa_020281 [Cucumis sativus]	[more]

BLAST of CSPI07G08890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08890.1	CSPI07G08890.1	mRNA