CSPI07G08720 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08720
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 6568756 .. 6569208 (+)
RNA-Seq Expression	CSPI07G08720
Synteny	CSPI07G08720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTAGCAAACTCAATCAATACTAAGCAAAACTCACTAAAAGTGACTCTAAAACAGGGAACAGCTCGGCAGGGTAGTCGGCTCGGGCGCGCGGCTCAGAAAAACAAAGACGACTCGTGCAAGAGATCGTGGATCACGCGACTCAGACTAACGCAACTTGGACGTATGGCTTGCGAAAAGAAGACCAGCTCGGCTTGCGTCCTTGACCGTCAAGCGCAACGATGGCCAGCGACACTGTGCAAGTGGAGGCTACGACCCATGATGGTTTCGACGGAGGAGAGGGTTACGGCCGACGACAATTTCGACGAAGGAGGGGCAGCCGGTTTCAAGTGATTATGAAGACAATGAGAGATGCTCGATTTGGCAACCAACGAGTAGATCTCGACTAACGAGTGATGACTGGCTGCGAGTTGTGTCCCCGACGATGATTGCGCAACGGTGGTGACCTGA

mRNA sequence

ATGGGGGTAGCAAACTCAATCAATACTAAGCAAAACTCACTAAAAGTGACTCTAAAACAGGGAACAGCTCGGCAGGGTAGTCGGCTCGGGCGCGCGGCTCAGAAAAACAAAGACGACTCGTGCAAGAGATCGTGGATCACGCGACTCAGACTAACGCAACTTGGACGTATGGCTTGCGAAAAGAAGACCAGCTCGGCTTGCGTCCTTGACCGTCAAGCGCAACGATGGCCAGCGACACTGTGCAAGTGGAGGCTACGACCCATGATGGTTTCGACGGAGGAGAGGGTTACGGCCGACGACAATTTCGACGAAGGAGGGGCAGCCGGTTTCAATTGTGTCCCCGACGATGATTGCGCAACGGTGGTGACCTGA

Coding sequence (CDS)

ATGGGGGTAGCAAACTCAATCAATACTAAGCAAAACTCACTAAAAGTGACTCTAAAACAGGGAACAGCTCGGCAGGGTAGTCGGCTCGGGCGCGCGGCTCAGAAAAACAAAGACGACTCGTGCAAGAGATCGTGGATCACGCGACTCAGACTAACGCAACTTGGACGTATGGCTTGCGAAAAGAAGACCAGCTCGGCTTGCGTCCTTGACCGTCAAGCGCAACGATGGCCAGCGACACTGTGCAAGTGGAGGCTACGACCCATGATGGTTTCGACGGAGGAGAGGGTTACGGCCGACGACAATTTCGACGAAGGAGGGGCAGCCGGTTTCAATTGTGTCCCCGACGATGATTGCGCAACGGTGGTGACCTGA

Protein sequence

MGVANSINTKQNSLKVTLKQGTARQGSRLGRAAQKNKDDSCKRSWITRLRLTQLGRMACEKKTSSACVLDRQAQRWPATLCKWRLRPMMVSTEERVTADDNFDEGGAAGFNCVPDDDCATVVT*

Homology

[Close]

BLAST of CSPI07G08720 vs. ExPASy TrEMBL
Match: A0A0A0L8I3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G516520 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 48  RLRLTQLGRMACEKKTSSACVLDRQAQRWPATLCKWRLRPMMVSTEERVTADDNFDEGGA 107
           +LRLT+LGR+A +KK  SACVLDRQ +RW ATLC+WR R + VSTEE  T DD+FDEGG 
Sbjct: 2   QLRLTRLGRVAHKKKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGGD 61

Query: 108 AGFNCV 114
             F  +
Sbjct: 62  DRFQVI 67

[Close]

BLAST of CSPI07G08720 vs. NCBI nr
Match: KGN58113.1 (hypothetical protein Csa_017550 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 48  RLRLTQLGRMACEKKTSSACVLDRQAQRWPATLCKWRLRPMMVSTEERVTADDNFDEGGA 107
           +LRLT+LGR+A +KK  SACVLDRQ +RW ATLC+WR R + VSTEE  T DD+FDEGG 
Sbjct: 2   QLRLTRLGRVAHKKKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGGD 61

Query: 108 AGFNCV 114
             F  +
Sbjct: 62  DRFQVI 67

The following BLAST results are available for this feature:

BLAST of CSPI07G08720 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G08720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8I3	1.0e-13	62.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G516520 PE=4 SV=1	[more]

BLAST of CSPI07G08720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58113.1	2.1e-13	62.12	hypothetical protein Csa_017550 [Cucumis sativus]	[more]

BLAST of CSPI07G08720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08720.1	CSPI07G08720.1	mRNA