CSPI07G08230 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08230
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 5997547 .. 5997816 (-)
RNA-Seq Expression	CSPI07G08230
Synteny	CSPI07G08230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGATGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGCAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTTGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACAGCCTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

mRNA sequence

ATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGATGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGCAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTTGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACAGCCTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Coding sequence (CDS)

ATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGATGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGCAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTTGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACAGCCTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Protein sequence

MIEGYNGGSGGHQRRSRTKDTMELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELELIFQRHNDEDMKQPVTTEIFSLENSATGT*

Homology

[Close]

BLAST of CSPI07G08230 vs. ExPASy TrEMBL
Match: A0A0A0K3G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109800 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MIEGYNGGSGGHQRRSRTKDTMELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60
          MIEGYNGGSGGHQRRSRTKDT ELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE
Sbjct: 1  MIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60

Query: 61 LIFQRHNDEDMKQPVTTEIFSLENSATGT 90
          LIFQRHNDEDMK  VTTEIFSLENSATGT
Sbjct: 61 LIFQRHNDEDMKHLVTTEIFSLENSATGT 89

[Close]

BLAST of CSPI07G08230 vs. NCBI nr
Match: KAE8645899.1 (hypothetical protein Csa_011875, partial [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MIEGYNGGSGGHQRRSRTKDTMELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60
          MIEGYNGGSGGHQRRSRTKDT ELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE
Sbjct: 2  MIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 61

Query: 61 LIFQRHNDEDMKQPVTTEIFSLENSATGT 90
          LIFQRHNDEDMK  VTTEIFSLENSATGT
Sbjct: 62 LIFQRHNDEDMKHLVTTEIFSLENSATGT 90

The following BLAST results are available for this feature:

BLAST of CSPI07G08230 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G08230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3G8	1.0e-36	96.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109800 PE=4 SV=1	[more]

BLAST of CSPI07G08230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645899.1	2.1e-36	96.63	hypothetical protein Csa_011875, partial [Cucumis sativus]	[more]

BLAST of CSPI07G08230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08230.1	CSPI07G08230.1	mRNA