CSPI06G29120 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G29120
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 25305041 .. 25305857 (-)
RNA-Seq Expression	CSPI06G29120
Synteny	CSPI06G29120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGCAGAAAAAACCAAAGCGATTGAGTTGTGGAAACGAAACTACATTCCACGTTTACCGCCCAAAGTACTTGAGAAAGTATAAAATATTAAAACCCCCATCCATTCCTTCAACAAACTCCTTATCAAAATCGCCTTTTCTTTCCACTTCTCTTATCAATTATTAAACAAACAAATTCCCTTCCTCTTCACGTCACACCCCACCAGCTACCATTCCCTTTTTTTCTTCCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCCTGCTCTCCCTTTTTAATCCCACTGTATGAGCCTTCCCCTTTTTCACAATTATCATTTTGATCTTATCATCATCCAATTATTGTTGTTATTATTAATATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGCTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCTTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAAAATTAAACACCTC

mRNA sequence

GATGGCAGAAAAAACCAAAGCGATTGAGTTGTGGAAACGAAACTACATTCCACGTTTACCGCCCAAAGTACTTGAGAAAGTATAAAATATTAAAACCCCCATCCATTCCTTCAACAAACTCCTTATCAAAATCGCCTTTTCTTTCCACTTCTCTTATCAATTATTAAACAAACAAATTCCCTTCCTCTTCACGTCACACCCCACCAGCTACCATTCCCTTTTTTTCTTCCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCCTGCTCTCCCTTTTTAATCCCACTGTATGAGCCTTCCCCTTTTTCACAATTATCATTTTGATCTTATCATCATCCAATTATTGTTGTTATTATTAATATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGCTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCTTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAAAATTAAACACCTC

Coding sequence (CDS)

ATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGCTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCTTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAA

Protein sequence

MSTRHRKLLSQGNIIPHHNQNPPGLSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFSCKTIHSCDITDNSFFKLPRDTIHVSTWK*

Homology

[Close]

BLAST of CSPI06G29120 vs. ExPASy TrEMBL
Match: A0A0A0KGJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.7e-82
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MSTRHRKLLSQGNIIPHHNQNPPGLSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60
           MSTRHRKLLSQGNIIPHHNQNPPG+SKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK
Sbjct: 1   MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60

Query: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120
           IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS
Sbjct: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120

Query: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 149
           CKTIHSCDITDNSFFKLPRDTIHVSTWK
Sbjct: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]

BLAST of CSPI06G29120 vs. ExPASy TrEMBL
Match: A0A5D3CLL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003820 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 133/151 (88.08%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MSTRHRKLLSQGNIIPHHNQNPPGLSKFRDFQALALHL--HSSSIYKNPDGASQFDHLVS 60
           MST HRK+LSQGNIIPHH QNPPGLSKFRDFQALALHL  HSSS YKNPD ASQFDHLVS
Sbjct: 1   MSTHHRKVLSQGNIIPHH-QNPPGLSKFRDFQALALHLHSHSSSTYKNPD-ASQFDHLVS 60

Query: 61  SKIPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGR 120
           SKIPPPPCR PP   NA SAKEELDDPFL+AYKECTKSVKNKGINN +GVVKKSKF FGR
Sbjct: 61  SKIPPPPCRFPP--YNAASAKEELDDPFLVAYKECTKSVKNKGINN-LGVVKKSKFFFGR 120

Query: 121 FSCKTIHSCDITD-NSFFKLPRDTIHVSTWK 149
           FSCKTI SCDITD NSFFKLPRDTIHVSTWK
Sbjct: 121 FSCKTIDSCDITDQNSFFKLPRDTIHVSTWK 146

[Close]

BLAST of CSPI06G29120 vs. ExPASy TrEMBL
Match: A0A7J6I4Y5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.4e-14
Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 0


Query: 5   HRKLLSQGNIIPHHNQNPPGLSKFRD----FQALALHLHSSSIYKNPDGASQFDHLVSSK 64
           HRK+ SQG+ IP   ++ PG+SK        QAL L   +SS   +P  ++  + LV  K
Sbjct: 3   HRKVYSQGS-IPFSWEDKPGISKVAQQNPRVQALDL---TSSPSPSPSISNTNNDLVKLK 62

Query: 65  IPPPPC---RLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFG 124
           IP PPC     PP  +N+    +  +DPFLLAYKECTK  K KG N     V+K+ F++ 
Sbjct: 63  IPLPPCPTPSQPPSRSNSAKGLKWQEDPFLLAYKECTKPQK-KGNNKKASKVRKTMFMY- 122

Query: 125 RFSCKTIHSCDITDNSFFKLPRDTIH 144
            FSCK+  SCD+ + +F KLP    H
Sbjct: 123 -FSCKS--SCDVRNENFVKLPTLPTH 139

[Close]

BLAST of CSPI06G29120 vs. ExPASy TrEMBL
Match: A0A803PEU5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.4e-14
Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 0


Query: 5   HRKLLSQGNIIPHHNQNPPGLSKFRD----FQALALHLHSSSIYKNPDGASQFDHLVSSK 64
           HRK+ SQG+ IP   ++ PG+SK        QAL L   +SS   +P  ++  + LV  K
Sbjct: 3   HRKVYSQGS-IPFSWEDKPGISKVAQQNPRVQALDL---TSSPSPSPSISNTNNDLVKLK 62

Query: 65  IPPPPC---RLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFG 124
           IP PPC     PP  +N+    +  +DPFLLAYKECTK  K KG N     V+K+ F++ 
Sbjct: 63  IPLPPCPTPSQPPSRSNSAKGLKWQEDPFLLAYKECTKPQK-KGNNKKASKVRKTMFMY- 122

Query: 125 RFSCKTIHSCDITDNSFFKLPRDTIH 144
            FSCK+  SCD+ + +F KLP    H
Sbjct: 123 -FSCKS--SCDVRNENFVKLPTLPTH 139

[Close]

BLAST of CSPI06G29120 vs. ExPASy TrEMBL
Match: W9RVC8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 0


Query: 5   HRKLLSQGNIIPHHNQNPPGLSKF------RDFQALALHLHSSSIYKNPDGASQF----- 64
           HRK+ SQG+ IP   ++ PG+SK       +D+++ AL L +SS    P  A QF     
Sbjct: 3   HRKVHSQGS-IPFLWEDKPGISKVTKQDCAKDYRSQALDL-TSSKSSPPSKAQQFSLLSD 62

Query: 65  -DHLVSS-----KIPPPPCRLPPPCNNAVSAK--EELDDPFLLAYKECTKSVKNKGINND 124
              LVS+     KIPPPPC   PP  ++ SAK     +DPFLLAYKECTK VK    N D
Sbjct: 63  GSKLVSATNDLLKIPPPPCLSQPPSRSS-SAKGLRWQEDPFLLAYKECTKPVKKGKDNED 122

Query: 125 ----VGVVKKSKFLFGRFSCKTIHSCDITDNSFFKL 138
                 V+ KS F++  FSCK  +SC++ +++F KL
Sbjct: 123 NKKRSKVIMKSMFMY--FSCK--NSCEVREDNFIKL 151

[Close]

BLAST of CSPI06G29120 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_003745 [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 5.6e-82
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MSTRHRKLLSQGNIIPHHNQNPPGLSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60
           MSTRHRKLLSQGNIIPHHNQNPPG+SKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK
Sbjct: 1   MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60

Query: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120
           IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS
Sbjct: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120

Query: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 149
           CKTIHSCDITDNSFFKLPRDTIHVSTWK
Sbjct: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]

BLAST of CSPI06G29120 vs. NCBI nr
Match: KAA0036397.1 (hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK12793.1 hypothetical protein E5676_scaffold255G003820 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 133/151 (88.08%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MSTRHRKLLSQGNIIPHHNQNPPGLSKFRDFQALALHL--HSSSIYKNPDGASQFDHLVS 60
           MST HRK+LSQGNIIPHH QNPPGLSKFRDFQALALHL  HSSS YKNPD ASQFDHLVS
Sbjct: 1   MSTHHRKVLSQGNIIPHH-QNPPGLSKFRDFQALALHLHSHSSSTYKNPD-ASQFDHLVS 60

Query: 61  SKIPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGR 120
           SKIPPPPCR PP   NA SAKEELDDPFL+AYKECTKSVKNKGINN +GVVKKSKF FGR
Sbjct: 61  SKIPPPPCRFPP--YNAASAKEELDDPFLVAYKECTKSVKNKGINN-LGVVKKSKFFFGR 120

Query: 121 FSCKTIHSCDITD-NSFFKLPRDTIHVSTWK 149
           FSCKTI SCDITD NSFFKLPRDTIHVSTWK
Sbjct: 121 FSCKTIDSCDITDQNSFFKLPRDTIHVSTWK 146

[Close]

BLAST of CSPI06G29120 vs. NCBI nr
Match: KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-17
Identity = 70/149 (46.98%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 5   HRKLLSQGNIIPHHNQNPPGLSK---FRDFQALALHLHSSSIYKNPDGASQFDHLVSSKI 64
           H+KL S+GN +P   +  PG+SK   F+D Q L LH    S++++    S+FD  V    
Sbjct: 3   HKKLYSKGN-VPFSWEEKPGISKKICFQDVQPLPLH----SVHED----SEFDD-VGKIP 62

Query: 65  PPPPCRLPPPCNNAVSAKEEL--DDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRF 124
           PPPPCR+ P      S K     +DPFL AYKECTKSVK   +     V KKSK LFG F
Sbjct: 63  PPPPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKL-----VAKKSK-LFG-F 122

Query: 125 SCKTIHSCDITDNSFFKLPRDTIHVSTWK 149
            CK+  SC+I D S FKL RD+I V +WK
Sbjct: 123 LCKSFDSCEIRDASVFKLGRDSIRVLSWK 134

[Close]

BLAST of CSPI06G29120 vs. NCBI nr
Match: KAF4375181.1 (hypothetical protein F8388_017327 [Cannabis sativa] >KAF4402079.1 hypothetical protein G4B88_017591 [Cannabis sativa])

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-13
Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 0


Query: 5   HRKLLSQGNIIPHHNQNPPGLSKFRD----FQALALHLHSSSIYKNPDGASQFDHLVSSK 64
           HRK+ SQG+ IP   ++ PG+SK        QAL L   +SS   +P  ++  + LV  K
Sbjct: 3   HRKVYSQGS-IPFSWEDKPGISKVAQQNPRVQALDL---TSSPSPSPSISNTNNDLVKLK 62

Query: 65  IPPPPC---RLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFG 124
           IP PPC     PP  +N+    +  +DPFLLAYKECTK  K KG N     V+K+ F++ 
Sbjct: 63  IPLPPCPTPSQPPSRSNSAKGLKWQEDPFLLAYKECTKPQK-KGNNKKASKVRKTMFMY- 122

Query: 125 RFSCKTIHSCDITDNSFFKLPRDTIH 144
            FSCK+  SCD+ + +F KLP    H
Sbjct: 123 -FSCKS--SCDVRNENFVKLPTLPTH 139

[Close]

BLAST of CSPI06G29120 vs. NCBI nr
Match: KAG6604109.1 (hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-13
Identity = 62/115 (53.91%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 5   HRKLLSQGNIIPHHNQNPPGLSK--FRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64
           HRK+LSQ N +P   +  P  SK  FRDFQALAL    SS Y    G S+FD  V SKIP
Sbjct: 3   HRKVLSQRN-LPFSWEQNPARSKFYFRDFQALALQPSPSSTYHR--GDSEFD--VVSKIP 62

Query: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKS 113
           PPP R  P      SAKE  DDPFL+AYKECTKSVKN     +G      V KKS
Sbjct: 63  PPPYRQQPRSIRNASAKE--DDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 110

The following BLAST results are available for this feature:

BLAST of CSPI06G29120 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G29120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGJ1	2.7e-82	99.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1	[more]
A0A5D3CLL9	1.1e-64	88.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7J6I4Y5	5.4e-14	41.78	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1	[more]
A0A803PEU5	5.4e-14	41.78	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
W9RVC8	1.0e-12	42.31	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1	[more]

BLAST of CSPI06G29120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48633.1	5.6e-82	99.32	hypothetical protein Csa_003745 [Cucumis sativus]	[more]
KAA0036397.1	2.4e-64	88.08	hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK1279...	[more]
KAG6594957.1	1.3e-17	46.98	hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF4375181.1	1.1e-13	41.78	hypothetical protein F8388_017327 [Cannabis sativa] >KAF4402079.1 hypothetical p...	[more]
KAG6604109.1	1.5e-13	53.91	hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G29120 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 1..138
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G29120.1	CSPI06G29120.1	mRNA