CSPI06G28950 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTTTGAGGGTCACTAATGGAATGTGAAACCCTAATGAATTCAGAGACGTTTCGATGAAACACGATTCTCTGTGACTTACCAATACCGTCGTCGGTCTCCGCCACAAACCCTAATACCTCGAAATGCCGTCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGGCTTCTCACTGTTGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACATGACTATGCCATCCTCTTCCGGTATAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCCAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGAAACCCAATTATTGAGAAGCTTAAGGAATTGGGAGCTACTGCTGTATTGGAATGACTTTTTTTCTTCTCCTCTGTCATTTCATACGTTATTTTTGGAGTAAAATAATGCTGCCCTTGTTGGAGAACTATCGAAATTTTTTCAAAGTGCCAAGATTTATGAAGATTACAATTGAAAGTCATATTGTTGCTTGACTCGATTTTCGAAGTACATTTGGTTTTTTCCCCTTTGACATTTCTCCGCCGGATTTGCAATGAGAATCAGTTTCATTCTGACGTTCCTAGCCGGACCTGATTAGCCAATCTATAATCCCCATGTAAACGAAGGGGAAGAATATGTCCTAAAAGCTCTCTCTCCTCTTCTACCCATTTGAGATGTGATATAAGAAAAATCTCTACTTCTTGTTCGGTAAAATTCCCCGAGGGAAAAGCTATATGTATTTTGTTCTTTCCATGAGATTCTTGAAGAACAATTGAACAATTTTAATTATGTTGCTTCTCTTCTCATGTGGGCTTAATTCTTGACAAAAAGTTGTCAAAGAATTGTTCTTCGTTCTTTGACGATCGGTTTATTTCTTCCTTTTTCCATGGGTTTAAGGGGCTTTTATAATCTGAATTATATCTAATT GTTTTGAGGGTCACTAATGGAATGTGAAACCCTAATGAATTCAGAGACGTTTCGATGAAACACGATTCTCTGTGACTTACCAATACCGTCGTCGGTCTCCGCCACAAACCCTAATACCTCGAAATGCCGTCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGGCTTCTCACTGTTGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACATGACTATGCCATCCTCTTCCGGTATAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCCAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGAAACCCAATTATTGAGAAGCTTAAGGAATTGGGAGCTACTGCTGTATTGGAATGACTTTTTTTCTTCTCCTCTGTCATTTCATACGTTATTTTTGGAGTAAAATAATGCTGCCCTTGTTGGAGAACTATCGAAATTTTTTCAAAGTGCCAAGATTTATGAAGATTACAATTGAAAGTCATATTGTTGCTTGACTCGATTTTCGAAGTACATTTGGTTTTTTCCCCTTTGACATTTCTCCGCCGGATTTGCAATGAGAATCAGTTTCATTCTGACGTTCCTAGCCGGACCTGATTAGCCAATCTATAATCCCCATGTAAACGAAGGGGAAGAATATGTCCTAAAAGCTCTCTCTCCTCTTCTACCCATTTGAGATGTGATATAAGAAAAATCTCTACTTCTTGTTCGGTAAAATTCCCCGAGGGAAAAGCTATATGTATTTTGTTCTTTCCATGAGATTCTTGAAGAACAATTGAACAATTTTAATTATGTTGCTTCTCTTCTCATGTGGGCTTAATTCTTGACAAAAAGTTGTCAAAGAATTGTTCTTCGTTCTTTGACGATCGGTTTATTTCTTCCTTTTTCCATGGGTTTAAGGGGCTTTTATAATCTGAATTATATCTAATT ATGCCGTCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGGCTTCTCACTGTTGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACATGACTATGCCATCCTCTTCCGGTATAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCCAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGAAACCCAATTATTGAGAAGCTTAAGGAATTGGGAGCTACTGCTGTATTGGAATGA MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE* Homology
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 4.8e-16 Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: A6LKB9 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) OX=391009 GN=rplL PE=3 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15 Identity = 60/134 (44.78%), Postives = 79/134 (58.96%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: Q9L5W4 (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.4e-15 Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 4.1e-15 Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: P36247 (50S ribosomal protein L7/L12 OS=Liberibacter asiaticus OX=34021 GN=rplL PE=3 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 7.0e-15 Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A0A0KLI9 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495700 PE=4 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A5D3CQX4 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003980 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78 Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A1S3B113 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484859 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78 Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A6J1IJE5 (uncharacterized protein LOC111477630 OS=Cucurbita maxima OX=3661 GN=LOC111477630 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74 Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 0
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A6J1BTU0 (uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005295 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.4e-74 Identity = 157/168 (93.45%), Postives = 164/168 (97.62%), Query Frame = 0
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_004141864.1 (uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical protein Csa_003359 [Cucumis sativus]) HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_008440399.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK12806.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa]) HSP 1 Score: 302.0 bits (772), Expect = 3.3e-78 Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_038882677.1 (50S ribosomal protein L7/L12 [Benincasa hispida]) HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76 Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_022977261.1 (uncharacterized protein LOC111477630 [Cucurbita maxima]) HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74 Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 0
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_022132437.1 (uncharacterized protein LOC111005295 [Momordica charantia]) HSP 1 Score: 288.1 bits (736), Expect = 4.9e-74 Identity = 157/168 (93.45%), Postives = 164/168 (97.62%), Query Frame = 0
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein ) HSP 1 Score: 159.1 bits (401), Expect = 3.2e-39 Identity = 91/161 (56.52%), Postives = 116/161 (72.05%), Query Frame = 0
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein ) HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25 Identity = 73/163 (44.79%), Postives = 104/163 (63.80%), Query Frame = 0
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ) HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25 Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ) HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25 Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein ) HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22 Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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