CSPI06G28950 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G28950
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L7/L12
LocationChr6: 25199436 .. 25200635 (+)
RNA-Seq ExpressionCSPI06G28950
SyntenyCSPI06G28950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGAGGGTCACTAATGGAATGTGAAACCCTAATGAATTCAGAGACGTTTCGATGAAACACGATTCTCTGTGACTTACCAATACCGTCGTCGGTCTCCGCCACAAACCCTAATACCTCGAAATGCCGTCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGGCTTCTCACTGTTGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACATGACTATGCCATCCTCTTCCGGTATAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCCAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGAAACCCAATTATTGAGAAGCTTAAGGAATTGGGAGCTACTGCTGTATTGGAATGACTTTTTTTCTTCTCCTCTGTCATTTCATACGTTATTTTTGGAGTAAAATAATGCTGCCCTTGTTGGAGAACTATCGAAATTTTTTCAAAGTGCCAAGATTTATGAAGATTACAATTGAAAGTCATATTGTTGCTTGACTCGATTTTCGAAGTACATTTGGTTTTTTCCCCTTTGACATTTCTCCGCCGGATTTGCAATGAGAATCAGTTTCATTCTGACGTTCCTAGCCGGACCTGATTAGCCAATCTATAATCCCCATGTAAACGAAGGGGAAGAATATGTCCTAAAAGCTCTCTCTCCTCTTCTACCCATTTGAGATGTGATATAAGAAAAATCTCTACTTCTTGTTCGGTAAAATTCCCCGAGGGAAAAGCTATATGTATTTTGTTCTTTCCATGAGATTCTTGAAGAACAATTGAACAATTTTAATTATGTTGCTTCTCTTCTCATGTGGGCTTAATTCTTGACAAAAAGTTGTCAAAGAATTGTTCTTCGTTCTTTGACGATCGGTTTATTTCTTCCTTTTTCCATGGGTTTAAGGGGCTTTTATAATCTGAATTATATCTAATT

mRNA sequence

GTTTTGAGGGTCACTAATGGAATGTGAAACCCTAATGAATTCAGAGACGTTTCGATGAAACACGATTCTCTGTGACTTACCAATACCGTCGTCGGTCTCCGCCACAAACCCTAATACCTCGAAATGCCGTCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGGCTTCTCACTGTTGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACATGACTATGCCATCCTCTTCCGGTATAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCCAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGAAACCCAATTATTGAGAAGCTTAAGGAATTGGGAGCTACTGCTGTATTGGAATGACTTTTTTTCTTCTCCTCTGTCATTTCATACGTTATTTTTGGAGTAAAATAATGCTGCCCTTGTTGGAGAACTATCGAAATTTTTTCAAAGTGCCAAGATTTATGAAGATTACAATTGAAAGTCATATTGTTGCTTGACTCGATTTTCGAAGTACATTTGGTTTTTTCCCCTTTGACATTTCTCCGCCGGATTTGCAATGAGAATCAGTTTCATTCTGACGTTCCTAGCCGGACCTGATTAGCCAATCTATAATCCCCATGTAAACGAAGGGGAAGAATATGTCCTAAAAGCTCTCTCTCCTCTTCTACCCATTTGAGATGTGATATAAGAAAAATCTCTACTTCTTGTTCGGTAAAATTCCCCGAGGGAAAAGCTATATGTATTTTGTTCTTTCCATGAGATTCTTGAAGAACAATTGAACAATTTTAATTATGTTGCTTCTCTTCTCATGTGGGCTTAATTCTTGACAAAAAGTTGTCAAAGAATTGTTCTTCGTTCTTTGACGATCGGTTTATTTCTTCCTTTTTCCATGGGTTTAAGGGGCTTTTATAATCTGAATTATATCTAATT

Coding sequence (CDS)

ATGCCGTCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGGCTTCTCACTGTTGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACATGACTATGCCATCCTCTTCCGGTATAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCCAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGAAACCCAATTATTGAGAAGCTTAAGGAATTGGGAGCTACTGCTGTATTGGAATGA

Protein sequence

MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE*
Homology
[Close]
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-16
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 0 

Query: 40  LERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKT 99
           +E I ++L  LT ++  + +     + G++   P     SA G +AA         AEKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAA-------VAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T+LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: A6LKB9 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) OX=391009 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 60/134 (44.78%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 38  QKLERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAE 97
           +KLE+I +E+  LT  E  +   +   K G++   P V  +   G+AA G AAAE    E
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAP-VMAMPVAGAAAGGGAAAE----E 61

Query: 98  KTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKV---PVVLKKGVTKDQGNPI 157
           KT FD+ L+ F  A KI +IK VR  T LGLKEAKDLVEK      V+K+GV KD+   I
Sbjct: 62  KTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEI 121

Query: 158 IEKLKELGATAVLE 169
            +KL+E GA   L+
Sbjct: 122 KKKLEEAGAEVELK 129

[Close]
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: Q9L5W4 (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-15
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 0 

Query: 40  LERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKT 99
           +E I ++L  LT I+  + +     + G++         SAP +A A +   +   AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVS--------ASAPVAAVAPAVXXDVAVAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ TDLGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

[Close]
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-15
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0 

Query: 37  TQKLERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEA 96
           ++K + I D L  L+ +E  +         G++    A   ++APG+    SAA E  E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

[Close]
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match: P36247 (50S ribosomal protein L7/L12 OS=Liberibacter asiaticus OX=34021 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.0e-15
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 0 

Query: 40  LERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKT 99
           +E I ++L  LT IE  + +     + G++   P    + AP +A AGSAA     +EKT
Sbjct: 4   IESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPV--SVVAPVAAEAGSAA-----SEKT 63

Query: 100 VFDIKLEKF-DAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 159
            F++ L+ F D   KI +IKEVR  TDLGLKEAK+LVE  P  LK G++KD+ N + +KL
Sbjct: 64  EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKL 122

Query: 160 KELGAT 165
           ++ GAT
Sbjct: 124 EDAGAT 122

[Close]
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A0A0KLI9 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A5D3CQX4 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003980 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APRPLLVRSLSTVAEERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF YKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A1S3B113 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484859 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APRPLLVRSLSTVAEERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF YKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A6J1IJE5 (uncharacterized protein LOC111477630 OS=Cucurbita maxima OX=3661 GN=LOC111477630 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match: A0A6J1BTU0 (uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005295 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.4e-74
Identity = 157/168 (93.45%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAPRPLLVRSLSTV++ER QKLERIADELL L+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSA+AGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_004141864.1 (uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical protein Csa_003359 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_008440399.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK12806.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa])

HSP 1 Score: 302.0 bits (772), Expect = 3.3e-78
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APRPLLVRSLSTVAEERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF YKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_038882677.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAPRPLLVRSLSTV++ERTQKLERIADELLDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSKERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_022977261.1 (uncharacterized protein LOC111477630 [Cucurbita maxima])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. NCBI nr
Match: XP_022132437.1 (uncharacterized protein LOC111005295 [Momordica charantia])

HSP 1 Score: 288.1 bits (736), Expect = 4.9e-74
Identity = 157/168 (93.45%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60
           MPSIASKLPAK+LVRLLTVAPRPLLVRSLSTV++ER QKLERIADELL L+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSA+AGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-39
Identity = 91/161 (56.52%), Postives = 116/161 (72.05%), Query Frame = 0 

Query: 10  AKSLVRLLTVAPRPLLVRSLSTVA--EERTQKLERIADELLDLTKIERHDYAILFRYKMG 69
           ++SL  L    P     R L  VA  E RT+KLERIAD+LL L +IE +DY++LF +K+G
Sbjct: 10  SRSLGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIG 69

Query: 70  LNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLG 129
           LN+YG AV   +  GS    SA+ ETK AEKT FD+KLEKF+AA+KIK+IKE+R FTDLG
Sbjct: 70  LNRYGSAV---AVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLG 129

Query: 130 LKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LKEAK LVEK PV++K G+TK++   I+EKLK +GA   LE
Sbjct: 130 LKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 73/163 (44.79%), Postives = 104/163 (63.80%), Query Frame = 0 

Query: 12  SLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAILFRYKMGLNK- 71
           S V+L T+       RS S+ A + ++ + +I +EL +LT +E  D   + R K+ +++ 
Sbjct: 23  SSVQLFTIQS-----RSYSSPATQ-SENVSKIVNELSNLTLLETMDLTEILRQKLNISEL 82

Query: 72  --YGPAVSGLSAPGSAAAGSAAAETKEAE---KTVFDIKLEKFDAAAKIKIIKEVRTFTD 131
                 + G+S PGS A+ SA  E KE +   KT FD+ L+ +DA +KIK+IKEVRT T 
Sbjct: 83  PVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITA 142

Query: 132 LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LGLKEAKDLVEK P +LKKGV+K++   IIEKLK +GA   +E
Sbjct: 143 LGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 37  TQKLERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 37  TQKLERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of CSPI06G28950 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 0 

Query: 37  TQKLERIADELLDLTKIERHDYAILFRYKMGLNKYGPAVS-GLSAPGSAAAGSAAAETKE 96
           + K+  +A+ +  L+  ER          + L K     S G+ A     AG+     ++
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNV---EEK 116

Query: 97  AEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPII 156
            EKT FD+KLEKF+A+ KIK+IKEVRTFT LGLKEAK+LVEKVP +LK+GVTK++ N II
Sbjct: 117 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 176

Query: 157 EKLKELGATAVLE 169
            K+K +G  AV+E
Sbjct: 177 AKIKAVGGIAVME 186

The following BLAST results are available for this feature:
BLAST of CSPI06G28950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P411894.8e-1641.4150S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
A6LKB91.1e-1544.7850S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI... [more]
Q9L5W42.4e-1541.4150S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494... [more]
A9BDG44.1e-1537.8850S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930... [more]
P362477.0e-1543.6550S ribosomal protein L7/L12 OS=Liberibacter asiaticus OX=34021 GN=rplL PE=3 SV=... [more]
BLAST of CSPI06G28950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLI94.9e-80100.00Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4957... [more]
A0A5D3CQX41.6e-7898.2150S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3B1131.6e-7898.2150S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484859 PE=4 SV=1[more]
A0A6J1IJE51.1e-7494.64uncharacterized protein LOC111477630 OS=Cucurbita maxima OX=3661 GN=LOC111477630... [more]
A0A6J1BTU02.4e-7493.45uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
BLAST of CSPI06G28950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141864.11.0e-79100.00uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical ... [more]
XP_008440399.13.3e-7898.21PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosom... [more]
XP_038882677.11.1e-7696.4350S ribosomal protein L7/L12 [Benincasa hispida][more]
XP_022977261.12.2e-7494.64uncharacterized protein LOC111477630 [Cucurbita maxima][more]
XP_022132437.14.9e-7493.45uncharacterized protein LOC111005295 [Momordica charantia][more]
BLAST of CSPI06G28950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37660.13.2e-3956.52Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT4G36420.11.2e-2544.79Ribosomal protein L12 family protein [more]
AT1G70190.13.4e-2546.48Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT1G70190.23.4e-2546.48Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT3G06040.12.1e-2246.62Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 94..167
e-value: 6.2E-21
score: 76.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 97..167
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 101..167
e-value: 9.8E-21
score: 73.9
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 3..168
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 39..167
e-value: 2.90193E-32
score: 109.938
NoneNo IPR availablePANTHERPTHR45987:SF1150S RIBOSOMAL PROTEIN L7/L12coord: 3..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G28950.1CSPI06G28950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome