CSPI06G22640 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCACGCTGTAGTTTTCAAGGTTTTTATTTTGACCATTTCAAATTCATATGAGCTATCATGTTCATTTGAGGACAATCTCGATATGAATACATGATTTTGATGTTCAAATAACATCCCTTGTAATGTCTAAAAGGTGTCACTTCAAGATTCTTTTTCTCCCAGAATTAGATTTGTGTTTCTGAAAGGATTTAAGCTTAGAAATGGGAGAGATGATGATAACCACCCAACACTATCATGTGTTCATGTGTCACCTACCCAAAAGATTATTCTGTATTAACAATAATTTTCTGCAGGTTTGAGATACTAGACATCATGCAGTTAGTTCAGATGGTGGGCTTTCGTTTTTTTGTAGTTCAAAGGAAGTGGAGTGAAAGATTTGAATCTCTTACATTTGGTCAAAGACACAAGGTTTGATTTGGACTAATTAGTATATGCATTAAGGCCATACATTATACACTATTTCTATTTATTACAGGTTTAGAAGGTAAATGGTGTATTCTCGCCAGACACGGTTAGCTTGAATGGCGCATAGGTCTGCGTTTTCCCGCTCAAATAGAGGCACTAATTTGAATTAGGTACTTTCCAACCCACCTGAAGTCTTTGTTAGTGATAGAGATAGAGTTATGAGTTAGAGAGAGAAATGTCAATTGTCAACAGAGCAATCAAACATGGCGGGTCCCCTTTTCCATATAGATCGAGATCGATGCCTGCACGTTTATTGCTTTACTCTCTCTTCATTGCCTGCTGCGGCGCGCTCCCCTCCACTCCAATGCTAACCACAAGGTCTTTGATCAATCACCTCATTCAATTCAACTTCACAAGCTTCCCTTAGAACCAACTTCTTCAGTTCAGATATGGAATTGGAATGAATGGCAGACATGGCATGGCCCTTCATTCTACTTCCGAGTGTCTCTCTTCTTCACCTCCACTCGACATTGGCGGACTTCTTTCAGCTCAGTTAATGACGTCCTATCTCTGAAGATCTACAGAAAACCCAAAACTGGTTAGTAGGATCATTATCTCTTTCATGAAAAACCAACTTTTCTTTTCTTGATTTTGCTCCTTTGTTTTGAGAAGACATTGTTTGAGGCATTCTTCTTTGTGGGTATCTCTGGTTTATTCTCTGTTTCATTTCACACCATAATCCCTTTTCGGGGTTCGTTGTGTCAGATTGGTACCTAGAAGAAATTTGAAGAGGAAATGGAGCGGGCTAATCGAGGGCGGAGATGGACAAATTTAAAGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAGTGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAAAATTTTTCAAAAACTCATTTTTGTTTTCCTAAAATTATTATCTCAATGTGATTTGTTTTTGTTTTATTTTGTGGTTTTGGTATATTTTTATTTTCTTCTGATAGGTATGATGGAAGGATAAGGCTGCACATGTTCATCAAAATTACATCATCCAAATATAACATTCTA GCACGCTGTAGTTTTCAAGGTTTTTATTTTGACCATTTCAAATTCATATGAGCTATCATGTTCATTTGAGGACAATCTCGATATGAATACATGATTTTGATGTTCAAATAACATCCCTTGTAATGTCTAAAAGGTGTCACTTCAAGATTCTTTTTCTCCCAGAATTAGATTTGTGTTTCTGAAAGGATTTAAGCTTAGAAATGGGAGAGATGATGATAACCACCCAACACTATCATGTGTTCATGTGTCACCTACCCAAAAGATTATTCTGTATTAACAATAATTTTCTGCAGGTTTGAGATACTAGACATCATGCAGTTAGTTCAGATGGTGGGCTTTCGTTTTTTTGTAGTTCAAAGGAAGTGGAGTGAAAGATTTGAATCTCTTACATTTGGTCAAAGACACAAGGTTTGATTTGGACTAATTAGTATATGCATTAAGGCCATACATTATACACTATTTCTATTTATTACAGGTTTAGAAGGTAAATGGTGTATTCTCGCCAGACACGGTTAGCTTGAATGGCGCATAGGTCTGCGTTTTCCCGCTCAAATAGAGGCACTAATTTGAATTAGGTACTTTCCAACCCACCTGAAGTCTTTGTTAGTGATAGAGATAGAGTTATGAGTTAGAGAGAGAAATGTCAATTGTCAACAGAGCAATCAAACATGGCGGGTCCCCTTTTCCATATAGATCGAGATCGATGCCTGCACGTTTATTGCTTTACTCTCTCTTCATTGCCTGCTGCGGCGCGCTCCCCTCCACTCCAATGCTAACCACAAGGTCTTTGATCAATCACCTCATTCAATTCAACTTCACAAGCTTCCCTTAGAACCAACTTCTTCAGTTCAGATATGGAATTGGAATGAATGGCAGACATGGCATGGCCCTTCATTCTACTTCCGAGTGTCTCTCTTCTTCACCTCCACTCGACATTGGCGGACTTCTTTCAGCTCAGTTAATGACGTCCTATCTCTGAAGATCTACAGAAAACCCAAAACTGATTGGTACCTAGAAGAAATTTGAAGAGGAAATGGAGCGGGCTAATCGAGGGCGGAGATGGACAAATTTAAAGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAGTGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAAAATTTTTCAAAAACTCATTTTTGTTTTCCTAAAATTATTATCTCAATGTGATTTGTTTTTGTTTTATTTTGTGGTTTTGGTATATTTTTATTTTCTTCTGATAGGTATGATGGAAGGATAAGGCTGCACATGTTCATCAAAATTACATCATCCAAATATAACATTCTA ATGGAGCGGGCTAATCGAGGGCGGAGATGGACAAATTTAAAGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAGTGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAA MERANRGRRWTNLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRSSAASGMNLAMALAAERNLRSDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF* Homology
BLAST of CSPI06G22640 vs. ExPASy Swiss-Prot
Match: F4ISV9 (E3 ubiquitin-protein ligase APD4 OS=Arabidopsis thaliana OX=3702 GN=APD4 PE=2 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04 Identity = 16/51 (31.37%), Postives = 28/51 (54.90%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2) HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04 Identity = 21/64 (32.81%), Postives = 33/64 (51.56%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy Swiss-Prot
Match: O35445 (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 7.3e-04 Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy Swiss-Prot
Match: Q5M807 (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus OX=10116 GN=Rnf5 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 7.3e-04 Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy TrEMBL
Match: A0A0A0KEL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1) HSP 1 Score: 345.9 bits (886), Expect = 9.6e-92 Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy TrEMBL
Match: A0A5A7V0I3 (Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00070 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90 Identity = 165/169 (97.63%), Postives = 165/169 (97.63%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy TrEMBL
Match: A0A6J1HXI8 (RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83 Identity = 153/169 (90.53%), Postives = 157/169 (92.90%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy TrEMBL
Match: A0A6J1GME5 (RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=4 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83 Identity = 153/169 (90.53%), Postives = 157/169 (92.90%), Query Frame = 0
BLAST of CSPI06G22640 vs. ExPASy TrEMBL
Match: A0A6J1EWQ9 (uncharacterized protein LOC111437226 OS=Cucurbita moschata OX=3662 GN=LOC111437226 PE=4 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 5.9e-73 Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 0
BLAST of CSPI06G22640 vs. NCBI nr
Match: KGN47968.1 (hypothetical protein Csa_002927 [Cucumis sativus]) HSP 1 Score: 345.9 bits (886), Expect = 2.0e-91 Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0
BLAST of CSPI06G22640 vs. NCBI nr
Match: KAA0061653.1 (zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 342.4 bits (877), Expect = 2.2e-90 Identity = 165/169 (97.63%), Postives = 165/169 (97.63%), Query Frame = 0
BLAST of CSPI06G22640 vs. NCBI nr
Match: XP_022953088.1 (RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022969345.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_022969346.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_023511758.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >XP_023511759.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >KAG6572419.1 hypothetical protein SDJN03_29147, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 318.9 bits (816), Expect = 2.6e-83 Identity = 153/169 (90.53%), Postives = 157/169 (92.90%), Query Frame = 0
BLAST of CSPI06G22640 vs. NCBI nr
Match: XP_023531397.1 (uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75 Identity = 146/170 (85.88%), Postives = 155/170 (91.18%), Query Frame = 0
BLAST of CSPI06G22640 vs. NCBI nr
Match: KAG6589274.1 (hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75 Identity = 146/170 (85.88%), Postives = 155/170 (91.18%), Query Frame = 0
BLAST of CSPI06G22640 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein ) HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31 Identity = 87/184 (47.28%), Postives = 108/184 (58.70%), Query Frame = 0
BLAST of CSPI06G22640 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein ) HSP 1 Score: 126.7 bits (317), Expect = 1.8e-29 Identity = 80/177 (45.20%), Postives = 96/177 (54.24%), Query Frame = 0
BLAST of CSPI06G22640 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein ) HSP 1 Score: 115.2 bits (287), Expect = 5.3e-26 Identity = 73/173 (42.20%), Postives = 95/173 (54.91%), Query Frame = 0
BLAST of CSPI06G22640 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein ) HSP 1 Score: 104.8 bits (260), Expect = 7.2e-23 Identity = 75/193 (38.86%), Postives = 101/193 (52.33%), Query Frame = 0
BLAST of CSPI06G22640 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein ) HSP 1 Score: 104.8 bits (260), Expect = 7.2e-23 Identity = 75/193 (38.86%), Postives = 101/193 (52.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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