CSPI06G20930 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G20930
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA-binding protein 24-A
Location	Chr6: 18993722 .. 18996642 (-)
RNA-Seq Expression	CSPI06G20930
Synteny	CSPI06G20930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGAGTATTAATGGTTTTTACTTTAATGGGTTTTTGTTAACTTTATACTTTTGTTTCTACTTTCTAAAAGTAATAGCCTAAGAACATTCGTTTTGACACCTTTTCTTTTCTAGCAAGCTAGTCGTATCTAATTGTTTGATCATTAATATCTATATTGTTGACATTGGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGTATTATTCACTTATTTGATCTTTTATTGCTCAGCAAATCATATTGCTAGTTCCTGTCATGTGTATTTTTGTATGATCGGGGATTTTTCTTGGCATGTGCCATTTTGTTGAAAGGAATTAATGTTCACAAATTCCTGTTTTCAGTTTTTTAAAGCTCTAGATCGATTGGTCTTTACTTTTACACTGCTGTTTCTTACAGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCTCCAAAGTTCTTCGTTGTGCATCCAAACCTACCAATATATTCAAATTTTGTTATTTTGTATAACTCCAATCTTTTGTGTTTTGCATTCCTATATCACGACCTTTGCATTTTGTATTATGACTCTGTGGGGATTTGTTCGCTTTCAGAAGTTCGAAATTATGATATTTGATTTATTTTTCATTTCTGATTGCCACTAAATCTTATATCAAATGAATGGTATCGTCTAGTTACTTTAGATGTAATTATGTAAATATATGCTTTCAGGTTGGGTGTTTCATTTTTTGAGGACAGTAACCTTGTCTTTTCTTTTGGACCTTATATCCTAGTTTTCATTGTTTCTTAACATGGTTCATAGATACCACTTGGTTGGTATACATTCCCTGCACTGCCAACTTAATGTTAGTATTTTTCTTTGAAGTCACAAGGTATATTACCAATCACTACATGCAGCATTCCTTAGGATATGTTTCTTTGTCACCTCCCAGAAATCAGGATTGGTACCTGATCAGTGATGTGGCACAGTGTGATTGGTAATTGCAGGAATACCATAGAAGTTGTATGAGGATATGTGCCAAGACTAATGTAATTGAACGGGAAGAAGCATGGCTAGTATTATTGGTGAAGTTTCATATCTTGTTTTCTCTTGCGTTTTATAGTTTATATTAAAAGTCAAGTTGGTAGGATTTGAACTCTAGTCTCTAGTTAATTGGGGTACCAAATATTTGTCTTCTGGTATCACAATGGACTGTGGGTTGTTAAACAATTTCCTCCTGTTAAGTTTGCATTGTTCTGTTTGTGCTACTACTTAAATTTCTGCTTTCATAATCCTATCGCTTGGAAATATTTAAAATGTTTTCAATTATTCGTTTCCTTTGCAGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGTATCACTGTTGGTATATTTACTTATGTCTGCAATTTTGTGTTTGAAGGGTGGATTTGGAAGTAGGGAAGGGTGATACGATGGGTATCCTTAGAAATTTCTCAAGCTTTTTGATAGTCCTAGCATAATATGCTCAGTGGTTTTGATTTTCTGTGTCTTGTATCCTTTGTCTAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGTTATGGTGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGTATTCTGCTTTGTATGATGATTACTCTTGATTACAACATTGAGCAATGTGAATTTTGACTAGTTTTTTAGGCATTTTTCCTTGAATTTCTTATTTTGTTATCATCAATTGGATAATCTTCTGTGTATTTGTGTTATCTTTTTTAGTTTCTCCACTGGTTTGGTCCTTCCGTCTTTTTCTCGAGGCCATTTCCTTTTCCTTCTATCATTTAATCTTTTGGATGTGCCTTTTTTAATCTTTTTAAAGAAAAACTGGTAAACTTGTGTTCAATCATTTTATTGACTTAGTTATGTGATAATAGTACTCTGAAGGTTAAAAAAGTGAGTGGCACCATCCAGTCAAAACAGTGCGATAATGGACTTAAGACTGGATATTTTACGGGGACAGTGAAGATTTGCTTTTTTTTTTGGTTGAAAACTTTTTTCATTCTAAAGGAATGAAAGTGCAAGTTTACAACAGAAGGGGAAGCCATTCATGGGGATATTGAAATTTGTGCTATATTTTTTATCATCTGATGTAGAATGGGGAAAACTAAAATAATATGGTTGGCATGTGAAGACATGCTTGATTAGAAAAACATGTTTGTATCATCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

mRNA sequence

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGTTATGGTGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

Coding sequence (CDS)

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGTTATGGTGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

Protein sequence

MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG*

Homology

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BLAST of CSPI06G20930 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.0e-31
Identity = 94/213 (44.13%), Postives = 117/213 (54.93%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYV----GG 136
           FVTF+D ++A RAC D TPII+GRRANCNLASLG          GRLR+         G 
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG----------GRLRKSPTMTSPQQGP 121

Query: 137 MQPNRGT--YIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNPFVG 196
              NR T  ++GN   +  P  +  QQ       A P YGY +    YV P   +N  VG
Sbjct: 122 KNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPS---AYVAPNMTFNQKVG 181

Query: 197 Q--------QYLQIYGVPGS-ASPTIYHYGQLG 209
                     Y Q+   P S   P  YH+   G
Sbjct: 182 YVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYG 201

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BLAST of CSPI06G20930 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-29
Identity = 84/217 (38.71%), Postives = 103/217 (47.47%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQIHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQL 207
            P  Y Y Q    P        P        Y  +    Y Q      +A+   Y Y   
Sbjct: 127 -PAHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA-- 186

Query: 208 GQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
               P   GY    GY    PQ L  + P   A  ++
Sbjct: 187 --ASPAATGYVTAAGYGYAVPQPLTAAAPGSAAAAAA 209

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BLAST of CSPI06G20930 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-28
Identity = 87/222 (39.19%), Postives = 107/222 (48.20%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
           Y Q      P   GY    GY     Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of CSPI06G20930 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-28
Identity = 86/222 (38.74%), Postives = 108/222 (48.65%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
           Y Q      P   GY    GY+    Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of CSPI06G20930 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 84/221 (38.01%), Postives = 104/221 (47.06%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+           P  GY      QY        SA+   Y 
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQY--------SAAAAAYE 186

Query: 208 YGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
                 +     GY A  GY     Q +  + P   A  ++
Sbjct: 187 QYPYAASPAAAAGYVAAGGYGYAVQQPITAAAPGTAAAAAA 209

[Close]

BLAST of CSPI06G20930 vs. ExPASy TrEMBL
Match: A0A5D3CHF9 (RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00070 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 3.5e-163
Identity = 284/286 (99.30%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of CSPI06G20930 vs. ExPASy TrEMBL
Match: A0A1S3CME8 (RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 3.5e-163
Identity = 284/286 (99.30%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of CSPI06G20930 vs. ExPASy TrEMBL
Match: A0A0A0KHA9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 1.2e-158
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]

BLAST of CSPI06G20930 vs. ExPASy TrEMBL
Match: A0A6J1G3W1 (RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 2.7e-155
Identity = 273/286 (95.45%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of CSPI06G20930 vs. ExPASy TrEMBL
Match: A0A6J1KGG8 (RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 5.1e-154
Identity = 270/286 (94.41%), Postives = 274/286 (95.80%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKN+GRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of CSPI06G20930 vs. NCBI nr
Match: XP_004146763.1 (RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_003949 [Cucumis sativus])

HSP 1 Score: 586.3 bits (1510), Expect = 1.5e-163
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of CSPI06G20930 vs. NCBI nr
Match: XP_008464801.1 (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 583.9 bits (1504), Expect = 7.3e-163
Identity = 284/286 (99.30%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of CSPI06G20930 vs. NCBI nr
Match: KAA0045404.1 (RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding protein 24-A [Cucumis melo var. makuwa])

HSP 1 Score: 583.9 bits (1504), Expect = 7.3e-163
Identity = 284/286 (99.30%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of CSPI06G20930 vs. NCBI nr
Match: XP_022946505.1 (RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protein 24-A [Cucurbita moschata])

HSP 1 Score: 557.8 bits (1436), Expect = 5.6e-155
Identity = 273/286 (95.45%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of CSPI06G20930 vs. NCBI nr
Match: KAG6599081.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 557.8 bits (1436), Expect = 5.6e-155
Identity = 273/286 (95.45%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of CSPI06G20930 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 379.0 bits (972), Expect = 3.3e-105
Identity = 191/292 (65.41%), Postives = 224/292 (76.71%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ  PG        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILE
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPPL Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY- 180
                GRLR  + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQF 240
             QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   ILQ 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 SGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTS 286
            GP V+ +T+S MP +QAPYPSGIP P   Q   +VHSP QF+Q + SDQT+
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSP-QFMQSTASDQTT 282

[Close]

BLAST of CSPI06G20930 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-90
Identity = 173/281 (61.57%), Postives = 207/281 (73.67%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT-----GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           M  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]

BLAST of CSPI06G20930 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-90
Identity = 173/281 (61.57%), Postives = 207/281 (73.67%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT-----GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           M  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]

BLAST of CSPI06G20930 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-49
Identity = 127/278 (45.68%), Postives = 162/278 (58.27%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPN 136
           FVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYGV 196
                   G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 PGSASPTI-------YHYGQLGQTVPG-GHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 256
            G+ SP+        Y+Y Q     P   H     + +     Q  Q   P+ ++    P
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

Query: 257 MPTIQAPYPSGIP---APVAAQPQFVVHSPSQFVQGSG 281
              ++AP PS +P    P+++  +   H+P Q  +  G
Sbjct: 242 -SNVEAPTPSNVPTSQGPLSSSTE--SHAPQQVSEEGG 269

[Close]

BLAST of CSPI06G20930 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 189.5 bits (480), Expect = 3.7e-48
Identity = 124/252 (49.21%), Postives = 148/252 (58.73%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPN 136
           FVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
             TY    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YG----VPGSASPTI----YHYGQLGQT--VPGGHGYGAVHGYAMPSPQILQFSGPN--V 251
           YG     P S+  TI    Y+YG   Q   VP  H +     Y        +FS P+  V
Sbjct: 182 YGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLV 241

The following BLAST results are available for this feature:

BLAST of CSPI06G20930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	9.0e-31	44.13	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	4.9e-29	38.71	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9BX46	2.5e-28	39.19	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
D3Z4I3	4.2e-28	38.74	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q5ZMA3	1.6e-27	38.01	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of CSPI06G20930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHF9	3.5e-163	99.30	RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CME8	3.5e-163	99.30	RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1	[more]
A0A0A0KHA9	1.2e-158	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV...	[more]
A0A6J1G3W1	2.7e-155	95.45	RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1	[more]
A0A6J1KGG8	5.1e-154	94.41	RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1	[more]

BLAST of CSPI06G20930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146763.1	1.5e-163	100.00	RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_...	[more]
XP_008464801.1	7.3e-163	99.30	PREDICTED: RNA-binding protein 24-A [Cucumis melo]	[more]
KAA0045404.1	7.3e-163	99.30	RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding prot...	[more]
XP_022946505.1	5.6e-155	95.45	RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protei...	[more]
KAG6599081.1	5.6e-155	95.45	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G20930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76460.1	3.3e-105	65.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.4e-90	61.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.4e-90	61.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	1.5e-49	45.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	3.7e-48	49.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..105 e-value: 1.8E-24 score: 97.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..90 e-value: 2.3E-17 score: 62.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 32..109 score: 17.114126
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..123 e-value: 1.7E-25 score: 91.5
None	No IPR available	PANTHER	PTHR11176:SF32	RNA-BINDING PROTEIN 38-LIKE ISOFORM X1	coord: 1..282
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 32..107 e-value: 2.47332E-46 score: 148.532
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..282
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G20930.1	CSPI06G20930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding