CSPI06G13960 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G13960
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Thylakoid soluble phosphoprotein TSP
Location	Chr6: 12351332 .. 12352190 (+)
RNA-Seq Expression	CSPI06G13960
Synteny	CSPI06G13960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAATGAATCCAGGAGTTGGGCCGTGCCGTGGATCCTAATGGGGCAGCCCAATAACCATATCGGCCCATGGGCCCATTCTAGAAAGCTAAAGGAAAATCGACGTGTCGAATTAGCAGCCAAGTCTAGTGGAGATTAATCGTAAAACATACAAAATAATAATAATAACAAGAGAAAGAGAGAAAAGAAAAGAAAAGAAAAAGAAGAAAAAAAATGAGGACTTTGAATCAAAGGGATAAGGCGCCTGTGGTGAGCTCGCGCTTCACATCACTCCATCGCCTCTTATTTTACCCAAATATCCTCTTCCCAATTTCATTCCATTTTGTTTCCAATTAAAACAACATTATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGACGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGCCGCCTCCGGTAACGGCACCGGCTCCGTCCGCGGTGGCCGAAAGAATTCCGTCCAAGTCCCCCCGAAGAAGAACGGCGGCGGGTTTGGTGGTCTCTTTGCCAAGAAAGACTGACACTTGCGGGGGCGGTGCCATTTCACTCATATATAATTTCTTTGTATTGTTGCCTTTTTTTTTTCTTCTTCTTATGTTGCTCTGATTGATTATTTTTCAATACTATGGTTACATTATTAATTATTGTTGGTAATTACTTTATTTTATTTACCATTATTATTATTATTGTTATTGTTATTATTTGTTCAATTAATTGATACGACAAAGATCTAGCTGCTAAT

mRNA sequence

CACAATGAATCCAGGAGTTGGGCCGTGCCGTGGATCCTAATGGGGCAGCCCAATAACCATATCGGCCCATGGGCCCATTCTAGAAAGCTAAAGGAAAATCGACGTGTCGAATTAGCAGCCAAGTCTAGTGGAGATTAATCGTAAAACATACAAAATAATAATAATAACAAGAGAAAGAGAGAAAAGAAAAGAAAAGAAAAAGAAGAAAAAAAATGAGGACTTTGAATCAAAGGGATAAGGCGCCTGTGGTGAGCTCGCGCTTCACATCACTCCATCGCCTCTTATTTTACCCAAATATCCTCTTCCCAATTTCATTCCATTTTGTTTCCAATTAAAACAACATTATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGACGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGCCGCCTCCGGTAACGGCACCGGCTCCGTCCGCGGTGGCCGAAAGAATTCCGTCCAAGTCCCCCCGAAGAAGAACGGCGGCGGGTTTGGTGGTCTCTTTGCCAAGAAAGACTGACACTTGCGGGGGCGGTGCCATTTCACTCATATATAATTTCTTTGTATTGTTGCCTTTTTTTTTTCTTCTTCTTATGTTGCTCTGATTGATTATTTTTCAATACTATGGTTACATTATTAATTATTGTTGGTAATTACTTTATTTTATTTACCATTATTATTATTATTGTTATTGTTATTATTTGTTCAATTAATTGATACGACAAAGATCTAGCTGCTAAT

Coding sequence (CDS)

ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGACGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGCCGCCTCCGGTAACGGCACCGGCTCCGTCCGCGGTGGCCGAAAGAATTCCGTCCAAGTCCCCCCGAAGAAGAACGGCGGCGGGTTTGGTGGTCTCTTTGCCAAGAAAGACTGA

Protein sequence

MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD*

Homology

[Close]

BLAST of CSPI06G13960 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
          AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of CSPI06G13960 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            SGNGTG+VR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CSPI06G13960 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            SGNGTG+VR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CSPI06G13960 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.9e-33
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of CSPI06G13960 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.9e-33
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of CSPI06G13960 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
          AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of CSPI06G13960 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 6.0e-40
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            SGNGTG+VR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CSPI06G13960 vs. NCBI nr
Match: XP_038901860.1 (uncharacterized protein LOC120088545 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAA RVFAATAAKGAGESKKE+GLLDWIIGSLNKDQLLETDPVLQKVEGK 
Sbjct: 1  MASLPIAFSPAAVRVFAATAAKGAGESKKEQGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
          AA+GNG+G+VRGGRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGGFGGLFAKKD 96

[Close]

BLAST of CSPI06G13960 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 9.8e-35
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
          + S    G+V GGRKNSVQVPPKKN GGFGGLFAK+D
Sbjct: 61 SNS----GTVSGGRKNSVQVPPKKN-GGFGGLFAKRD 92

[Close]

BLAST of CSPI06G13960 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 7.0e-33
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGESKKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of CSPI06G13960 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-14
Identity = 40/93 (43.01%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEGK 60
          ++SL ++F+PA  RV+A +   G+G  K+EK  +D+++G + K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 DAASGNGTGSVRGGRKNSVQVPPKKNGGGFGGL 93
          +  +  G G+VRGG+ ++    PKK+ GGFGGL
Sbjct: 62 EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

The following BLAST results are available for this feature:

BLAST of CSPI06G13960 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G13960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC59	1.1e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A5A7V5S9	2.9e-40	93.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	2.9e-40	93.81	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]
A0A6J1L2X7	9.9e-33	81.44	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	9.9e-33	81.44	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of CSPI06G13960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143212.1	2.3e-44	100.00	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_008464052.1	6.0e-40	93.81	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]
XP_038901860.1	1.3e-39	93.81	uncharacterized protein LOC120088545 [Benincasa hispida]	[more]
KAG7010512.1	9.8e-35	87.63	hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023532336.1	7.0e-33	82.47	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI06G13960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47070.1	2.1e-14	43.01	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..95 e-value: 1.7E-23 score: 83.1
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..97
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 20..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G13960.1	CSPI06G13960.1	mRNA