CSPI06G09660 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G09660
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glutaredoxin family protein
Location	Chr6: 8287132 .. 8287362 (+)
RNA-Seq Expression	CSPI06G09660
Synteny	CSPI06G09660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATTGGGACCCGCACAGGCCTTCAGGACCGGACTCCACAGCCACTGCAACAAGAACTTCCTTCTATTTCTCCCATTTACATTAAACGTCCTTCCTTCTCCATCCCTCATTACCTGCCCTATATACCCACCACCACCGCCGGTCCCATACAGCCCCTCACAGAGGTCACCGATCTCCGTAGGCGCCGTCGGATCCTCGCCCGCGTACCAAGCATTCACCAATGGATTTGA

mRNA sequence

AGCATTGGGACCCGCACAGGCCTTCAGGACCGGACTCCACAGCCACTGCAACAAGAACTTCCTTCTATTTCTCCCATTTACATTAAACGTCCTTCCTTCTCCATCCCTCATTACCTGCCCTATATACCCACCACCACCGCCGGTCCCATACAGCCCCTCACAGAGGTCACCGATCTCCGTAGGCGCCGTCGGATCCTCGCCCGCGTACCAAGCATTCACCAATGGATTTGA

Coding sequence (CDS)

AGCATTGGGACCCGCACAGGCCTTCAGGACCGGACTCCACAGCCACTGCAACAAGAACTTCCTTCTATTTCTCCCATTTACATTAAACGTCCTTCCTTCTCCATCCCTCATTACCTGCCCTATATACCCACCACCACCGCCGGTCCCATACAGCCCCTCACAGAGGTCACCGATCTCCGTAGGCGCCGTCGGATCCTCGCCCGCGTACCAAGCATTCACCAATGGATTTGA

Protein sequence

SIGTRTGLQDRTPQPLQQELPSISPIYIKRPSFSIPHYLPYIPTTTAGPIQPLTEVTDLRRRRRILARVPSIHQWI*

Homology

[Close]

BLAST of CSPI06G09660 vs. ExPASy TrEMBL
Match: A0A5A7RKG3 (Glutaredoxin family protein OS=Striga asiatica OX=4170 GN=STAS_35577 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.3e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 2   IGTRTGLQDRTPQPLQQELPSISPIYIKRPSFSIPHYLPYIPTTTAGPIQPLTEVTDLRR 61
           +G R GL+ RTP PL Q+ P    + ++RP  ++PH+LP +P   A P+QPL +V DLRR
Sbjct: 59  VGPRAGLEHRTPNPLHQKPPPPPAVQVERPPAAVPHHLPNVPAAAARPVQPLAQVPDLRR 118

Query: 62  RRRILARVPSIHQ 75
           RRR+LA VP + Q
Sbjct: 119 RRRVLAGVPRVDQ 131

[Close]

BLAST of CSPI06G09660 vs. NCBI nr
Match: GER57757.1 (glutaredoxin family protein [Striga asiatica])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 2   IGTRTGLQDRTPQPLQQELPSISPIYIKRPSFSIPHYLPYIPTTTAGPIQPLTEVTDLRR 61
           +G R GL+ RTP PL Q+ P    + ++RP  ++PH+LP +P   A P+QPL +V DLRR
Sbjct: 59  VGPRAGLEHRTPNPLHQKPPPPPAVQVERPPAAVPHHLPNVPAAAARPVQPLAQVPDLRR 118

Query: 62  RRRILARVPSIHQ 75
           RRR+LA VP + Q
Sbjct: 119 RRRVLAGVPRVDQ 131

The following BLAST results are available for this feature:

BLAST of CSPI06G09660 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G09660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7RKG3	5.3e-13	49.32	Glutaredoxin family protein OS=Striga asiatica OX=4170 GN=STAS_35577 PE=4 SV=1	[more]

BLAST of CSPI06G09660 vs. NCBI nr


Match Name	E-value	Identity	Description
GER57757.1	1.1e-12	49.32	glutaredoxin family protein [Striga asiatica]	[more]

BLAST of CSPI06G09660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G09660.1	CSPI06G09660.1	mRNA