CSPI05G25070 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G25070
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 24481203 .. 24481409 (-)
RNA-Seq Expression	CSPI05G25070
Synteny	CSPI05G25070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTGCAACAGTGGCAGAGACCGGTGGACCAACCAACTGTGGAGTGGGGTTTTGGTTCACATGGATTTTGGGGGAAATTGGCCGGCGTCGCCATGAGGGTGTGTTTGAAACTGACGGGAAAAGAGGTGGGTGAGGGTGGCAGAGATGGCGGTTGCAGTGGTGCCGACGGCAGTGAAGAGAATGTGGCGTCTTGGTGGGAATAA

mRNA sequence

ATGTCGTTGCAACAGTGGCAGAGACCGGTGGACCAACCAACTGTGGAGTGGGGTTTTGGTTCACATGGATTTTGGGGGAAATTGGCCGGCGTCGCCATGAGGGTGTGTTTGAAACTGACGGGAAAAGAGGTGGGTGAGGGTGGCAGAGATGGCGGTTGCAGTGGTGCCGACGGCAGTGAAGAGAATGTGGCGTCTTGGTGGGAATAA

Coding sequence (CDS)

ATGTCGTTGCAACAGTGGCAGAGACCGGTGGACCAACCAACTGTGGAGTGGGGTTTTGGTTCACATGGATTTTGGGGGAAATTGGCCGGCGTCGCCATGAGGGTGTGTTTGAAACTGACGGGAAAAGAGGTGGGTGAGGGTGGCAGAGATGGCGGTTGCAGTGGTGCCGACGGCAGTGAAGAGAATGTGGCGTCTTGGTGGGAATAA

Protein sequence

MSLQQWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVASWWE*

Homology

[Close]

BLAST of CSPI05G25070 vs. ExPASy TrEMBL
Match: A0A0A0KR25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608480 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.8e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSLQQWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSE 60
          MSLQQWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSE
Sbjct: 1  MSLQQWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSE 60

Query: 61 ENVASWWE 69
          ENVASWWE
Sbjct: 61 ENVASWWE 68

[Close]

BLAST of CSPI05G25070 vs. NCBI nr
Match: KAE8648786.1 (hypothetical protein Csa_009080 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 6.1e-31
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 6  WQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVAS 65
          WQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVAS
Sbjct: 5  WQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVAS 64

Query: 66 WWE 69
          WWE
Sbjct: 65 WWE 67

The following BLAST results are available for this feature:

BLAST of CSPI05G25070 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G25070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR25	4.8e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608480 PE=4 SV=1	[more]

BLAST of CSPI05G25070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648786.1	6.1e-31	100.00	hypothetical protein Csa_009080 [Cucumis sativus]	[more]

BLAST of CSPI05G25070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G25070.1	CSPI05G25070.1	mRNA