CSPI05G14270 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G14270
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	30S ribosomal protein S13, chloroplastic-like
Location	Chr5: 14587671 .. 14588730 (-)
RNA-Seq Expression	CSPI05G14270
Synteny	CSPI05G14270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTTTATATGTGTAGTTAGCCTCTCTCTTTCTCTCTCTCCCTCGCCATCCTCTGAACCGCCTTCCCAGAAATGTTTGGAGTTCGTCGTTCCTTGGGGATTGTCTCTAATGCTCTCCTTCCTCGCTTTGAATCATTATCAGTGAGTTCATTAACCTCGCCTATTTCTTTTTTTCTTTTTCATTTCATAAGAATTTTAGAATTTAGGGCTCCTCAACCTCACACTATTCGGTTCAATCATTCCTCTTACTTCTTTCCTGTTTTGAAATCTCCATATTCAATTTGATTTCCTGTTCATGCATTGATTCCCGTTTTAAGGTTTAGAGTGTTTGTATGAGGTGAAGGAATGTGTGGATGATACGTGCAGATCCAGTCGATTCATTTAGGAGCAGGTATGGAGATCCCCGATAGCAAACCACTCAAATTTGCACTTCAGTACATCAATGGAATTGGCCGAGCGAGAGCAAACCAAGTTCTTGCCCAGCTACACTTGGAAAACAAGCTTTCCAAAGATTTGACTAAAAAAGAGCTCATTTTTCTTGCAGACGAAATTTCCAAGTACACGGTTGGACATGAGCTGGTAAATTAGTCTCTCTTTCTCTAGCTTTTCTTCCCATGAATTTCACATACGCGGGGATAGCGTAACAGGATGCTTTGCTTGCAGGATAAATGTGTTCAAAGGGACATTGGTAGGTTGCAGGACATTCAGTGCCATAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTGTGAAGTCGAAACAGACCCGTGTTGGAAAGAGGAAAGCCTTTCATTGAGCAAACAGTTTTGCAATTTCTCCTCTCTTCTTGCATTCTTGAACTGATTGATTATAAACATATTTGGATTTCAACCAAGTTTCATGATTTCTCTTTTAGTCCCAATATTTTGTTTAGGGTTCATTTAGTGAAGAATTCATTATTGGATGGGGATGAATGGCTTTAGAAACGTTTCAAATGTTTGTAACCAATGAAAATTGCTTAATGATTTCATGTCCAACTATTGCAGTCT

mRNA sequence

GTTGTTTATATGTGTAGTTAGCCTCTCTCTTTCTCTCTCTCCCTCGCCATCCTCTGAACCGCCTTCCCAGAAATGTTTGGAGTTCGTCGTTCCTTGGGGATTGTCTCTAATGCTCTCCTTCCTCGCTTTGAATCATTATCAGTGAGTTCATTAACCTCGCCTATTTCTTTTTTTCTTTTTCATTTCATAAGAATTTTAGAATTTAGGGCTCCTCAACCTCACACTATTCGGTTCAATCATTCCTCTTACTTCTTTCCTGTTTTGAAATCTCCATATTCAATTTGATTTCCTGTTCATGCATTGATTCCCGTTTTAAGGTTTAGAGTGTTTGTATGAGGTGAAGGAATGTGTGGATGATACGTGCAGATCCAGTCGATTCATTTAGGAGCAGGTATGGAGATCCCCGATAGCAAACCACTCAAATTTGCACTTCAGTACATCAATGGAATTGGCCGAGCGAGAGCAAACCAAGTTCTTGCCCAGCTACACTTGGAAAACAAGCTTTCCAAAGATTTGACTAAAAAAGAGCTCATTTTTCTTGCAGACGAAATTTCCAAGTACACGGTTGGACATGAGCTGGATAAATGTGTTCAAAGGGACATTGGTAGGTTGCAGGACATTCAGTGCCATAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTGTGAAGTCGAAACAGACCCGTGTTGGAAAGAGGAAAGCCTTTCATTGAGCAAACAGTTTTGCAATTTCTCCTCTCTTCTTGCATTCTTGAACTGATTGATTATAAACATATTTGGATTTCAACCAAGTTTCATGATTTCTCTTTTAGTCCCAATATTTTGTTTAGGGTTCATTTAGTGAAGAATTCATTATTGGATGGGGATGAATGGCTTTAGAAACGTTTCAAATGTTTGTAACCAATGAAAATTGCTTAATGATTTCATGTCCAACTATTGCAGTCT

Coding sequence (CDS)

ATGGAGATCCCCGATAGCAAACCACTCAAATTTGCACTTCAGTACATCAATGGAATTGGCCGAGCGAGAGCAAACCAAGTTCTTGCCCAGCTACACTTGGAAAACAAGCTTTCCAAAGATTTGACTAAAAAAGAGCTCATTTTTCTTGCAGACGAAATTTCCAAGTACACGGTTGGACATGAGCTGGATAAATGTGTTCAAAGGGACATTGGTAGGTTGCAGGACATTCAGTGCCATAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTGTGAAGTCGAAACAGACCCGTGTTGGAAAGAGGAAAGCCTTTCATTGA

Protein sequence

MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH*

Homology

[Close]

BLAST of CSPI05G14270 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-33
Identity = 74/148 (50.00%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRF--ESLSIQSIHLGAGM--EIPDSKPLKFALQYINGIGRARA 60
           MFG  R L  V+  L        + +Q+I++G G+  EIPD+K L +ALQ ++GIGR++A
Sbjct: 1   MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKA 60

Query: 61  NQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRH 120
             ++A+L +ENK  KDL+K+EL  + + +SKY +G++L KCV+RD+GRL  IQC+RGIRH
Sbjct: 61  QHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRH 120

Query: 121 EQGLPCRGQRTKTNARTVKSKQTRVGKR 145
              LPCRGQRT TNART +S++T  G R
Sbjct: 121 VDSLPCRGQRTHTNARTRRSRKTFSGSR 148

[Close]

BLAST of CSPI05G14270 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-31
Identity = 68/130 (52.31%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 17  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKK 76
           P  +SLSI+   +G G+EIP +K ++++LQYI+GIGR RA Q+L  L +ENK++KD+ ++
Sbjct: 38  PNKQSLSIRCARVG-GVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEE 97

Query: 77  ELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKS 136
           ELI L DE+SKY +  +L +     I RL++IQC+RG+RH QGLPCRGQRTK N RT+K 
Sbjct: 98  ELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKG 157

Query: 137 KQTRV-GKRK 146
           K+  + GK+K
Sbjct: 158 KKIAIAGKKK 166

[Close]

BLAST of CSPI05G14270 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.8e-29
Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 0


Query: 1   MFGVRRS---LGIVSNALLPR--FESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRAR 60
           M G+RRS   L  +S +LL    F  L +Q I +G   E+P++KPLK  LQ + GIGR +
Sbjct: 1   MLGLRRSATTLFDISQSLLRNVTFHGLRVQGIRVG-NAEVPNNKPLKTGLQEVYGIGRRK 60

Query: 61  ANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIR 120
           ++QVL  L + NKL++DLT KELI L +E+ ++  G EL + V  +I RL ++ C+RG R
Sbjct: 61  SHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSR 120

Query: 121 HEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA 147
           H  GLPCRGQRT TNART K K   + GK+KA
Sbjct: 121 HRHGLPCRGQRTSTNARTKKGKAVAIAGKKKA 151

[Close]

BLAST of CSPI05G14270 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-27
Identity = 64/126 (50.79%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 22  LSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFL 81
           LSI+ + +G  +EIP++K ++++LQYI+GIGR+RA Q+L  L LENKL+K+L++ EL+ +
Sbjct: 43  LSIKCVRVG-NVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQV 102

Query: 82  ADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVK-SKQTR 141
            DE++KY +  +L +     I RL++IQC+RG+RH QGLPCRGQRTK N RT+K  K+ +
Sbjct: 103 RDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQ 162

Query: 142 V-GKRK 146
           + GK+K
Sbjct: 163 IAGKKK 167

[Close]

BLAST of CSPI05G14270 vs. ExPASy Swiss-Prot
Match: A9B434 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95) OX=316274 GN=rpsM PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 31  AGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEISK-Y 90
           +G++IP +K ++ +L YI GIGR  + ++LA+ ++  N   KDLT+ E+I L + I + Y
Sbjct: 5   SGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDY 64

Query: 91  TVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV--GKRKA 147
           TV  +L + VQ +I RL DI C+RGIRH +GLP RGQRTKTNART + K+     GK+KA
Sbjct: 65  TVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKA 124

[Close]

BLAST of CSPI05G14270 vs. ExPASy TrEMBL
Match: A0A0A0KMX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381850 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.2e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL
Sbjct: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL
Sbjct: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120

Query: 121 PCRGQRTKTNARTVKSKQTRVGKRKAFH 149
           PCRGQRTKTNARTVKSKQTRVGKRKAFH
Sbjct: 121 PCRGQRTKTNARTVKSKQTRVGKRKAFH 148

[Close]

BLAST of CSPI05G14270 vs. ExPASy TrEMBL
Match: A0A6J1FGA3 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445150 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.1e-58
Identity = 115/146 (78.77%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLG+VSN LL RF SLSI SIH+ AG+EIPD+KPLK+ALQYINGIGR+RA QVL
Sbjct: 1   MFGVRRSLGVVSNDLLHRFRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           A+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++DI RLQ IQCHRGIRH +GL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 121 PCRGQRTKTNARTVKSKQTRVGKRKA 147
           PCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 121 PCRGQRTKTNARTMKSKQIGSGKKKA 146

[Close]

BLAST of CSPI05G14270 vs. ExPASy TrEMBL
Match: A0A6J1JVL8 (small ribosomal subunit protein S13, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111489279 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 115/146 (78.77%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLG+VSN LL RF SLSI+SIH+ AGMEIPD+KPLK+ALQYINGIGR+RA QVL
Sbjct: 1   MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGMEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           A+LHLENKL+KDLTK+E++ LADEISKY VGHEL KCV++DI RLQ IQCHRGIRH +GL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELKKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 121 PCRGQRTKTNARTVKSKQTRVGKRKA 147
           PCRGQRTKTNART+KSKQ    K+KA
Sbjct: 121 PCRGQRTKTNARTMKSKQIGSEKKKA 146

[Close]

BLAST of CSPI05G14270 vs. ExPASy TrEMBL
Match: A0A6J1CKC9 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011935 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLGIVSNA L R  S SI+SIH+ AGMEIPD KPL+FALQYI+GIGR+RANQVL
Sbjct: 1   MFGVRRSLGIVSNAALRR--SQSIESIHVKAGMEIPDDKPLRFALQYIDGIGRSRANQVL 60

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           A+LHL NKL+KDLTK+EL+ L DEISKY VGHEL+ CV++DI RLQ+IQCHRGIRH QGL
Sbjct: 61  AELHLGNKLAKDLTKRELVILGDEISKYMVGHELNSCVKKDIARLQEIQCHRGIRHGQGL 120

Query: 121 PCRGQRTKTNARTVKSKQTRV-GKRKA 147
           PCRGQRTKTNART+KSKQ  V GK+KA
Sbjct: 121 PCRGQRTKTNARTMKSKQIVVAGKKKA 145

[Close]

BLAST of CSPI05G14270 vs. ExPASy TrEMBL
Match: A0A2P5D3D1 (Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_263780 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.2e-37
Identity = 85/150 (56.67%), Postives = 112/150 (74.67%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSI-----QSIHLGAGMEIPDSKPLKFALQYINGIGRAR 60
           MFG+R S  +VSN  L   +S  I     + I++ AGMEIPD K L+FAL YI+GIGRAR
Sbjct: 1   MFGLRSSASVVSNLRLQLLQSSPINGQRARCINVKAGMEIPDDKRLEFALPYIHGIGRAR 60

Query: 61  ANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIR 120
           A Q+L++L++ENKL+K+LTK+E+  L +E+SKY++G EL  CV+RD+ RL DI+C+RG R
Sbjct: 61  ARQILSELNMENKLAKELTKREVFVLGEELSKYSLGKELRSCVERDVKRLMDIRCYRGAR 120

Query: 121 HEQGLPCRGQRTKTNARTVKSKQTRVGKRK 146
           H  GLP RGQRTKTNART KS++  V  RK
Sbjct: 121 HSDGLPTRGQRTKTNARTNKSQKLPVAARK 150

[Close]

BLAST of CSPI05G14270 vs. NCBI nr
Match: XP_004140326.1 (small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus] >XP_031741498.1 small ribosomal subunit protein S13, mitochondrial-like isoform X1 [Cucumis sativus] >KGN50980.1 hypothetical protein Csa_007892 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 4.6e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL
Sbjct: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL
Sbjct: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120

Query: 121 PCRGQRTKTNARTVKSKQTRVGKRKAFH 149
           PCRGQRTKTNARTVKSKQTRVGKRKAFH
Sbjct: 121 PCRGQRTKTNARTVKSKQTRVGKRKAFH 148

[Close]

BLAST of CSPI05G14270 vs. NCBI nr
Match: XP_023550656.1 (30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 117/146 (80.14%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLGIVSN LL RF SLSI+SIH+ AGMEIPD+KPLK+ALQYINGIGR+RA QVL
Sbjct: 1   MFGVRRSLGIVSNDLLHRFRSLSIESIHIKAGMEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           A+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++DI RLQ IQCHRGIRH +GL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 121 PCRGQRTKTNARTVKSKQTRVGKRKA 147
           PCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 121 PCRGQRTKTNARTMKSKQIGSGKKKA 146

[Close]

BLAST of CSPI05G14270 vs. NCBI nr
Match: XP_011655183.1 (small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >XP_011655184.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031741499.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >KAE8652086.1 hypothetical protein Csa_018623 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 5.6e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 33  MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 92
           MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH
Sbjct: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60

Query: 93  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 149
           ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
Sbjct: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 116

[Close]

BLAST of CSPI05G14270 vs. NCBI nr
Match: KAG7016519.1 (30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.2 bits (596), Expect = 7.4e-58
Identity = 115/146 (78.77%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLG+VSN LL RF SLSI+SIH+ AG+EIPD+KPLK+ALQYINGIGR+RA QVL
Sbjct: 62  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVL 121

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           A+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++DI RLQ IQCHRGIRH +GL
Sbjct: 122 AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 181

Query: 121 PCRGQRTKTNARTVKSKQTRVGKRKA 147
           PCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 182 PCRGQRTKTNARTMKSKQIGSGKKKA 207

[Close]

BLAST of CSPI05G14270 vs. NCBI nr
Match: KAG6578996.1 (Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.2 bits (596), Expect = 7.4e-58
Identity = 115/146 (78.77%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60
           MFGVRRSLG+VSN LL RF SLSI+SIH+ AG+EIPD+KPLK+ALQYINGIGR+RA QVL
Sbjct: 62  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVL 121

Query: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120
           A+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++DI RLQ IQCHRGIRH +GL
Sbjct: 122 AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 181

Query: 121 PCRGQRTKTNARTVKSKQTRVGKRKA 147
           PCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 182 PCRGQRTKTNARTMKSKQIGSGKKKA 207

[Close]

BLAST of CSPI05G14270 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-32
Identity = 68/130 (52.31%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 17  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKK 76
           P  +SLSI+   +G G+EIP +K ++++LQYI+GIGR RA Q+L  L +ENK++KD+ ++
Sbjct: 38  PNKQSLSIRCARVG-GVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEE 97

Query: 77  ELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKS 136
           ELI L DE+SKY +  +L +     I RL++IQC+RG+RH QGLPCRGQRTK N RT+K 
Sbjct: 98  ELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKG 157

Query: 137 KQTRV-GKRK 146
           K+  + GK+K
Sbjct: 158 KKIAIAGKKK 166

[Close]

BLAST of CSPI05G14270 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 127.9 bits (320), Expect = 6.9e-30
Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 0


Query: 1   MFGVRRS---LGIVSNALLPR--FESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRAR 60
           M G+RRS   L  +S +LL    F  L +Q I +G   E+P++KPLK  LQ + GIGR +
Sbjct: 1   MLGLRRSATTLFDISQSLLRNVTFHGLRVQGIRVG-NAEVPNNKPLKTGLQEVYGIGRRK 60

Query: 61  ANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIR 120
           ++QVL  L + NKL++DLT KELI L +E+ ++  G EL + V  +I RL ++ C+RG R
Sbjct: 61  SHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSR 120

Query: 121 HEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA 147
           H  GLPCRGQRT TNART K K   + GK+KA
Sbjct: 121 HRHGLPCRGQRTSTNARTKKGKAVAIAGKKKA 151

[Close]

BLAST of CSPI05G14270 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-16
Identity = 39/78 (50.00%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 17  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKK 76
           P  +SLSI+   +G G+EIP +K ++++LQYI+GIGR RA Q+L  L +ENK++KD+ ++
Sbjct: 38  PNKQSLSIRCARVG-GVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEE 97

Query: 77  ELIFLADEISKYTVGHEL 95
           ELI L DE+SKY +  +L
Sbjct: 98  ELIILRDEVSKYMIEGDL 114

[Close]

BLAST of CSPI05G14270 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 42/135 (31.11%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 35  IPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEIS------- 94
           +   + + FAL  I GIGR  AN V  +  ++ NK + +L+  E+  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 95  --------------KYT--VGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTN 146
                         KY+  V + LD  ++ D+ RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

[Close]

BLAST of CSPI05G14270 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 42/135 (31.11%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 35  IPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEIS------- 94
           +   + + FAL  I GIGR  AN V  +  ++ NK + +L+  E+  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 95  --------------KYT--VGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTN 146
                         KY+  V + LD  ++ D+ RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

The following BLAST results are available for this feature:

BLAST of CSPI05G14270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPW2	2.9e-33	50.00	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP...	[more]
P42732	3.6e-31	52.31	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
Q9CA19	9.8e-29	48.68	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P82163	1.8e-27	50.79	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
A9B434	2.8e-20	48.33	30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM ...	[more]

BLAST of CSPI05G14270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMX9	2.2e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381850 PE=3 SV=1	[more]
A0A6J1FGA3	6.1e-58	78.77	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JVL8	1.8e-57	78.77	small ribosomal subunit protein S13, mitochondrial-like OS=Cucurbita maxima OX=3...	[more]
A0A6J1CKC9	1.4e-54	78.23	30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A2P5D3D1	1.2e-37	56.67	Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_263780 PE=3 SV=1	[more]

BLAST of CSPI05G14270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140326.1	4.6e-76	100.00	small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus] ...	[more]
XP_023550656.1	1.9e-58	80.14	30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_011655183.1	5.6e-58	100.00	small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sati...	[more]
KAG7016519.1	7.4e-58	78.77	30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAG6578996.1	7.4e-58	78.77	Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrospe...	[more]

BLAST of CSPI05G14270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14320.1	2.5e-32	52.31	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	6.9e-30	48.68	Ribosomal protein S13/S18 family	[more]
AT5G14320.2	2.6e-16	50.00	Ribosomal protein S13/S18 family	[more]
AT1G22780.1	4.1e-06	31.11	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	4.1e-06	31.11	Ribosomal protein S13/S18 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.50		coord: 1..64 e-value: 2.4E-15 score: 58.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..116
None	No IPR available	PANTHER	PTHR10871:SF28	SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL	coord: 1..114
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..114
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 2..101 e-value: 7.0E-26 score: 91.1
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 1..115 e-value: 7.6E-38 score: 127.4
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 1..104 score: 29.896864
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 66..115 e-value: 2.2E-21 score: 77.1
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 80..93
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G14270.3	CSPI05G14270.3	mRNA
CSPI05G14270.1	CSPI05G14270.1	mRNA
CSPI05G14270.2	CSPI05G14270.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding