CSPI05G01570 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G01570
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 2211588 .. 2211854 (+)
RNA-Seq ExpressionCSPI05G01570
SyntenyCSPI05G01570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGACCAAAACCCAATCAAACACTCATCAAAACCAACGAAAAACTTAAATGGCTTAAGGAAGAGAGGAAAAGACTCATAGCTCGGCTAAGAGGAGGCCATGACTCAGCTTTTGGAAATTCAGCTTGCGAAGGACTGCATGGAAGCGCAGAGCTTGCACACTGCTCGCGAAGGGTGGAGGATCGTCTCGGACTGAAGGGTATCGACTCAGATCAACAAGGAACTTCGCGATTGGCTTCAACGAGCCTTTGGGTTCGTTGTTAA

mRNA sequence

ATGGGTAGACCAAAACCCAATCAAACACTCATCAAAACCAACGAAAAACTTAAATGGCTTAAGGAAGAGAGGAAAAGACTCATAGCTCGGCTAAGAGGAGGCCATGACTCAGCTTTTGGAAATTCAGCTTGCGAAGGACTGCATGGAAGCGCAGAGCTTGCACACTGCTCGCGAAGGGTGGAGGATCGTCTCGGACTGAAGGGTATCGACTCAGATCAACAAGGAACTTCGCGATTGGCTTCAACGAGCCTTTGGGTTCGTTGTTAA

Coding sequence (CDS)

ATGGGTAGACCAAAACCCAATCAAACACTCATCAAAACCAACGAAAAACTTAAATGGCTTAAGGAAGAGAGGAAAAGACTCATAGCTCGGCTAAGAGGAGGCCATGACTCAGCTTTTGGAAATTCAGCTTGCGAAGGACTGCATGGAAGCGCAGAGCTTGCACACTGCTCGCGAAGGGTGGAGGATCGTCTCGGACTGAAGGGTATCGACTCAGATCAACAAGGAACTTCGCGATTGGCTTCAACGAGCCTTTGGGTTCGTTGTTAA

Protein sequence

MGRPKPNQTLIKTNEKLKWLKEERKRLIARLRGGHDSAFGNSACEGLHGSAELAHCSRRVEDRLGLKGIDSDQQGTSRLASTSLWVRC*
Homology
[Close]
BLAST of CSPI05G01570 vs. ExPASy TrEMBL
Match: A0A0A0KIY8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G073680 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.0e-29
Identity = 69/78 (88.46%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1  MGRPKPNQTLIKTNEKLKWLKEERKRLIARLRGGHDSAFGNSACEGLHGSAELAHCSRRV 60
          MGRPKPNQTLIKTNEKLKWLKEERKRLIARLRGGHDSAFGNSACEGLHG AELAHCSRRV
Sbjct: 1  MGRPKPNQTLIKTNEKLKWLKEERKRLIARLRGGHDSAFGNSACEGLHGRAELAHCSRRV 60

Query: 61 EDRLGLKGIDSDQQGTSR 79
          EDRL LK  DS   G  R
Sbjct: 61 EDRLKLK--DSPDDGARR 76

[Close]
BLAST of CSPI05G01570 vs. NCBI nr
Match: KGN49695.1 (hypothetical protein Csa_018463 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 69/78 (88.46%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1  MGRPKPNQTLIKTNEKLKWLKEERKRLIARLRGGHDSAFGNSACEGLHGSAELAHCSRRV 60
          MGRPKPNQTLIKTNEKLKWLKEERKRLIARLRGGHDSAFGNSACEGLHG AELAHCSRRV
Sbjct: 1  MGRPKPNQTLIKTNEKLKWLKEERKRLIARLRGGHDSAFGNSACEGLHGRAELAHCSRRV 60

Query: 61 EDRLGLKGIDSDQQGTSR 79
          EDRL LK  DS   G  R
Sbjct: 61 EDRLKLK--DSPDDGARR 76

The following BLAST results are available for this feature:
BLAST of CSPI05G01570 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G01570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIY86.0e-2988.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G073680 PE=4 SV=1[more]
BLAST of CSPI05G01570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49695.11.2e-2888.46hypothetical protein Csa_018463 [Cucumis sativus][more]
BLAST of CSPI05G01570 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G01570.1CSPI05G01570.1mRNA