CSPI04G27190 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G27190
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA helicase
LocationChr4: 23967078 .. 23968731 (+)
RNA-Seq ExpressionCSPI04G27190
SyntenyCSPI04G27190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACTTTTTACATCAATTCGTGTTGGAAGCAGAAGAGGAATAATGGCGCTGATGAAAGGAGAACCCCTGTTGAGGAAGCTCGCCGTGTTCGCTGGGTACATCGTTCTTCCGGGAGCCATGGCCGCTGCTCTCATTTACTCTCCTCCCGATTACATCTACTCCAAGAAAGACGAGAAAGACGATAAGTCTTCCAAATAGGACTCTTTCCCCTTCTTTCACCGAATGGTTCGTCTCATCTTACTCCAGTAGGGTTACTGTTTTACATTTCATTCTTATTCTAAAATGTTGATAGACGATCTTATCTAAATATTGCATATTGAATGTTGATCTTATCTTGAATGAATGCTCGTTGTGGTTGCAATCAGCAATTGCACATTATGTTTCCTGTATCTGATAATCATCGATTACAAAATGGATAGTGGTTATATCTGATGGATTTATACCTGTATTTTCCTGATTTTGCTTAGTTTAGAAACTCGAGCGTACACTTTCCTCGTCGTTGTGATTGGGGCTTGTACAAAGCGTATTGAACTTGTCTCTTCATTTATTCCCCTTCTTCGGTTAACTTCTAGTTGATCTTTTCTTGATAATTCTGATTTGACTTCGCGTGAATTTAGACCGAATAGACTAGCTTTCGAAGGAATGAAAGCAGTAGGCTCTATAGATCCAATTTGCATCTGTTGCTTGAACAAACTAGGTTTAAGAGTGTTTATCTTTTCGTAGGATCATCATCTAGATGACCAGCCATGTAATGGGCCATATTAGTAGTTGATTATGCATTTATTGCTTGAACGTAAGGTTTCTTATTCTTGATTATAATCCACCCAACACGCGGAAAATTGCATGAACACTAGCCATCTATCCCCCGTGGGGTTTAAAGGCTGACTATCTGTGCTGCACGATAATTTCTGGATACCTTTTTTCTCGACATATGGATTTCAGAATAAGGCTTGAATTTTCAGAAACAAGTATTTGGGAATCACGCTGAATACTATATGTACATTATAAGCTTTGGTATTTGTTCTTTTATCTCCAACGCAATAAGTTGGAATTGGACTTGATTTTCTGTTTTCTTTTGATGCAGGATCGTCTGATCATGTAGGCTTGCATTTGCAGTGTTGTATTTCTCTTATGTTGATAATGGTGTGTACTGGACTTATTGTCATGTCTCAATAACTAGTCATTTGTCTTACTTTTGAGGCTTCGCCTTTGGAGAAATAATAAACTTTTTCCCTCTTCTTTTTCTCTTTATGTTTTTTGAAGAAATTCTATGAGATAATACATATCATTTGAAGTAGAGACTGAACCATGGAAGTGGGAACTTTATGGGATACATTACTCTAAATTTCATATGCTTATATGAAAATTTGAACAGTTATAAAATGCGGGAAATGAAGAATCCCCACGACCACACAAACCATACATATTTATTCACAGTTCACACAGTCCTAAAGTACTAACCCTTTGGTTCTGCCCACTGTCGAATTGAAATCAAAATTTCCACTTTTAGGTGACTTGGAGTGTTGACAATGACAGAGGATAAAGATGCTTCATGGAGAGATTATCATAGCAAATAATTAAAAAGCCACTCCCAACTGGGTTGACTGTTGAGTGTGTTAATAACAGGGAAAGAAGATACTTTGGAGCAGAC

mRNA sequence

GGACTTTTTACATCAATTCGTGTTGGAAGCAGAAGAGGAATAATGGCGCTGATGAAAGGAGAACCCCTGTTGAGGAAGCTCGCCGTGTTCGCTGGGTACATCGTTCTTCCGGGAGCCATGGCCGCTGCTCTCATTTACTCTCCTCCCGATTACATCTACTCCAAGAAAGACGAGAAAGACGATAAGTCTTCCAAATAGGACTCTTTCCCCTTCTTTCACCGAATGGATCGTCTGATCATGTAGGCTTGCATTTGCAGTGTTGTATTTCTCTTATGTTGATAATGGTGTGTACTGGACTTATTGTCATGTCTCAATAACTAGTCATTTGTCTTACTTTTGAGGCTTCGCCTTTGGAGAAATAATAAACTTTTTCCCTCTTCTTTTTCTCTTTATGTTTTTTGAAGAAATTCTATGAGATAATACATATCATTTGAAGTAGAGACTGAACCATGGAAGTGGGAACTTTATGGGATACATTACTCTAAATTTCATATGCTTATATGAAAATTTGAACAGTTATAAAATGCGGGAAATGAAGAATCCCCACGACCACACAAACCATACATATTTATTCACAGTTCACACAGTCCTAAAGTACTAACCCTTTGGTTCTGCCCACTGTCGAATTGAAATCAAAATTTCCACTTTTAGGTGACTTGGAGTGTTGACAATGACAGAGGATAAAGATGCTTCATGGAGAGATTATCATAGCAAATAATTAAAAAGCCACTCCCAACTGGGTTGACTGTTGAGTGTGTTAATAACAGGGAAAGAAGATACTTTGGAGCAGAC

Coding sequence (CDS)

ATGGCGCTGATGAAAGGAGAACCCCTGTTGAGGAAGCTCGCCGTGTTCGCTGGGTACATCGTTCTTCCGGGAGCCATGGCCGCTGCTCTCATTTACTCTCCTCCCGATTACATCTACTCCAAGAAAGACGAGAAAGACGATAAGTCTTCCAAATAG

Protein sequence

MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDKSSK*
Homology
[Close]
BLAST of CSPI04G27190 vs. ExPASy TrEMBL
Match: A0A0A0L4N8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-18
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDKSSK 52
          MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKK+EKDDKSSK
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNEKDDKSSK 51

[Close]
BLAST of CSPI04G27190 vs. ExPASy TrEMBL
Match: A0A6J5TUT5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDK 49
          MALM+GEPL+ KLAV A Y+VLPGAM AALIYSPPDY  SK D K  K
Sbjct: 14 MALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKNDPKSTK 61

[Close]
BLAST of CSPI04G27190 vs. ExPASy TrEMBL
Match: A0A2R6PZ99 (DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-08
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDKS 50
          M  M+GEPL+ KLAV A Y VLPGAM AALIYSPPDY Y KK ++   S
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHDQGSSS 49

[Close]
BLAST of CSPI04G27190 vs. ExPASy TrEMBL
Match: A0A6A4L8H6 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_11281 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDKS 50
          MA M+GEPL+ KLAV A Y VLPGAM AALIYSPPDY+ SKK +    S
Sbjct: 1  MAFMRGEPLVAKLAVIAKYGVLPGAMIAALIYSPPDYVSSKKHDHASSS 49

[Close]
BLAST of CSPI04G27190 vs. ExPASy TrEMBL
Match: A0A5N6RC88 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014130 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYS 41
          MALM+GEPL++KLA+ A Y+VLPGAM AAL+YSPPDY  S
Sbjct: 1  MALMRGEPLVKKLALLAKYVVLPGAMVAALVYSPPDYASS 40

[Close]
BLAST of CSPI04G27190 vs. NCBI nr
Match: KGN55532.1 (hypothetical protein Csa_011995 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDKSSK 52
          MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKK+EKDDKSSK
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNEKDDKSSK 51

[Close]
BLAST of CSPI04G27190 vs. NCBI nr
Match: KAG7037970.1 (hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 9.0e-11
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDE 45
          MALMKGEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY Y K D+
Sbjct: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 44

[Close]
BLAST of CSPI04G27190 vs. NCBI nr
Match: CAB4267529.1 (unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 69.7 bits (169), Expect = 8.4e-09
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDK 49
          MALM+GEPL+ KLAV A Y+VLPGAM AALIYSPPDY  SK D K  K
Sbjct: 14 MALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKNDPKSTK 61

[Close]
BLAST of CSPI04G27190 vs. NCBI nr
Match: KAG2698054.1 (hypothetical protein I3760_07G133200 [Carya illinoinensis] >KAG6648250.1 hypothetical protein CIPAW_07G134400 [Carya illinoinensis] >KAG6704534.1 hypothetical protein I3842_07G137400 [Carya illinoinensis])

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDK 49
          MA M+GEPL+ KLAV A Y+VLPGAM AALIYSPPDY  S K +K  K
Sbjct: 1  MAFMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYASSSKSDKSQK 48

[Close]
BLAST of CSPI04G27190 vs. NCBI nr
Match: KAG7971403.1 (hypothetical protein I3843_07G132200 [Carya illinoinensis])

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKDEKDDK 49
          MA M+GEPL+ KLAV A Y+VLPGAM AALIYSPPDY  S K  K  K
Sbjct: 1  MAFMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYASSSKSNKSQK 48

The following BLAST results are available for this feature:
BLAST of CSPI04G27190 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G27190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4N86.3e-1898.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1[more]
A0A6J5TUT54.1e-0972.92Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 S... [more]
A0A2R6PZ997.7e-0865.31DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 ... [more]
A0A6A4L8H62.2e-0767.35Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A5N6RC883.8e-0772.50Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014130 PE=4 SV=1[more]
BLAST of CSPI04G27190 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55532.11.3e-1798.04hypothetical protein Csa_011995 [Cucumis sativus][more]
KAG7037970.19.0e-1181.82hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyro... [more]
CAB4267529.18.4e-0972.92unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product... [more]
KAG2698054.14.2e-0868.75hypothetical protein I3760_07G133200 [Carya illinoinensis] >KAG6648250.1 hypothe... [more]
KAG7971403.17.1e-0868.75hypothetical protein I3843_07G132200 [Carya illinoinensis][more]
BLAST of CSPI04G27190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G27190.1CSPI04G27190.1mRNA
CSPI04G27190.2CSPI04G27190.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane